Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Contig-U04372-1Q.Seq.d (256 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU072596) Dictyostelium discoideum slug cDNA, clone SSA345. 145 6e-41 2 (EK422408) 1095515523479 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.12 2 (FI258412) CccaBb036-B7JR CccABb Cajanus cajan genomic clone... 38 0.12 2 (FI232800) CccaBb010-L3JR CccABb Cajanus cajan genomic clone... 38 0.12 2 (AL385221) Medicago truncatula EST MtBC27B06R1 : T7 end of c... 34 0.12 2 (AM463758) Vitis vinifera, whole genome shotgun sequence, co... 48 0.16 1 (AL356800) Human chromosome 14 DNA sequence BAC R-97N10 of l... 48 0.16 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 44 0.20 4 (DQ207726) Aspergillus niger strain N909 mitochondrion, comp... 46 0.29 2 (CP000095) Prochlorococcus marinus str. NATL2A, complete gen... 34 0.31 2 (AL161545) Arabidopsis thaliana DNA chromosome 4, contig fra... 40 0.42 2 (Z97342) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c... 40 0.42 2 (FG284787) 1108770681778 New World Screwworm Egg 9261 ESTs C... 34 0.45 2 (FG284779) 1108770681765 New World Screwworm Egg 9261 ESTs C... 34 0.45 2 (AF126324) Chonocephalus heymonsi isolate M 12S ribosomal RN... 34 0.47 2 (AF126313) Chonocephalus heymonsi isolate N 12S ribosomal RN... 34 0.47 2 (AC150993) Bos taurus BAC CH240-186K21 (Children's Hospital... 36 0.50 3 (ER405216) 1095356004163 Global-Ocean-Sampling_GS-34-01-01-1... 42 0.53 2 (ER386648) 1094426018236 Global-Ocean-Sampling_GS-34-01-01-1... 42 0.55 2 (EJ868631) 1093018298937 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.57 2 (EJ878774) 1093018384764 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.60 2 (AC188992) Callithrix jacchus BAC clone CH259-34H12 from chr... 46 0.62 1 (AM474204) Vitis vinifera contig VV78X230753.8, whole genome... 46 0.62 1 (EI741646) CHORI5148E15TR BAC library from the primary breas... 46 0.62 1 (DX538340) GH_MBb0090I04r GH_MBb Gossypium hirsutum genomic ... 46 0.62 1 (FD343874) CBPN24635.g1 CBPN: Subtracted channel catfish cDN... 46 0.62 1 (CP000660) Pyrobaculum arsenaticum DSM 13514, complete genome. 42 0.92 2 (AC214551) Pan troglodytes BAC clone CH251-547A11 from chrom... 32 1.3 2 (AC204628) Zea mays chromosome 9 clone CH201-245O2; ZMMBBc02... 32 1.3 2 (AC146030) Pan troglodytes BAC clone RP43-124E21 from chromo... 32 1.3 2 (AC073468) Homo sapiens BAC clone RP11-405I21 from 7, comple... 32 1.3 2 (ER971829) AF__Bc0053J11f AF__Bc Aquilegia formosa genomic, ... 32 1.6 2 (AF303440) Rheum sublanceolatum tRNA-Leu (trnL) gene and trn... 32 1.7 2 (CD362459) AGENCOURT_14238774 NICHD_XGC_Brn1 Xenopus laevis ... 34 1.7 2 (CB180288) AGENCOURT_11382489 NICHD_XGC_Tad1 Xenopus laevis ... 34 1.7 2 (EY176642) CBTI5633.g1_A18.ab1:P Triphysaria pusilla root ti... 34 1.7 2 (EW964946) BRHL_02_D14_T7 Headlice composite library with al... 34 1.7 2 (BG551896) dd21b07.y1 Wellcome CRC pSK St 10 5 Xenopus laevi... 34 1.8 2 (EJ766311) 1092963263606 Global-Ocean-Sampling_GS-30-02-01-1... 36 2.0 2 (ER350471) 1092346004209 Global-Ocean-Sampling_GS-34-01-01-1... 36 2.0 2 (AE017157) Chlamydophila pneumoniae TW-183, section 1 of 4 o... 42 2.2 2 (AC157993) Mus musculus chromosome 1, clone RP23-74E8, compl... 44 2.4 1 (AC118196) Mus musculus chromosome 1, clone RP23-354J2, comp... 44 2.4 1 (AC110257) Mus musculus chromosome 3, clone RP23-276I11, com... 44 2.4 1 (AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 44 2.4 1 (AP004857) Oryza sativa Japonica Group genomic DNA, chromoso... 44 2.4 1 (EA701787) Sequence 80666 from patent US 7365185. 44 2.4 1 (AC092583) Homo sapiens BAC clone RP11-19B22 from 2, complet... 44 2.4 1 (AC130963) Medicago truncatula chromosome 6 clone mth2-36c15... 44 2.4 1 (AC090462) Homo sapiens chromosome 8 clone RP11-108B8 map 8,... 44 2.4 1 (AC225490) Medicago truncatula clone mth2-3k13, WORKING DRAF... 44 2.4 1 (AZ686697) ENTIC84TF Entamoeba histolytica Sheared DNA Entam... 44 2.4 1 (AZ681123) ENTLH59TR Entamoeba histolytica Sheared DNA Entam... 44 2.4 1 (AZ676373) ENTIH38TF Entamoeba histolytica Sheared DNA Entam... 44 2.4 1 (EJ409940) 1093012132235 Global-Ocean-Sampling_GS-28-01-01-1... 44 2.4 1 (EJ343434) 1092963532053 Global-Ocean-Sampling_GS-28-01-01-1... 44 2.4 1 (EJ154453) 1092343796239 Global-Ocean-Sampling_GS-27-01-01-1... 44 2.4 1 (CG878932) ZMMBBb0499F01f ZMMBBb (HindIII) Zea mays subsp. m... 44 2.4 1 (CE085552) tigr-gss-dog-17000359011288 Dog Library Canis lup... 44 2.4 1 (AG320704) Mus musculus molossinus DNA, clone:MSMg01-106L01.... 44 2.4 1 (AG282367) Mus musculus molossinus DNA, clone:MSMg01-054G21.... 44 2.4 1 (EB255113) CNSN01-C-007411-501 Normalized CNS library (juven... 44 2.4 1 (AM424728) Vitis vinifera contig VV78X141985.3, whole genome... 34 3.3 2 (AC212626) Solanum lycopersicum chromosome 7 clone C07HBa007... 40 3.6 2 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 32 3.8 2 (BJ421994) Dictyostelium discoideum cDNA clone:ddv44a18, 5' ... 34 4.4 2 (AC143050) Macaca mulatta clone CH250-267I9, *** SEQUENCING ... 30 4.5 2 (CU151857) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.6 2 (FP015921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 4.6 2 (AC090346) Homo sapiens chromosome 18 clone RP11-824D7 map 1... 30 4.6 2 (AC022031) Homo sapiens chromosome 18, clone RP11-397A16, co... 30 4.6 2 (AP001457) Homo sapiens genomic DNA, chromosome 18q21 clone:... 30 4.6 2 (FP090911) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.6 2 (BJ371155) Dictyostelium discoideum cDNA clone:ddc56j23, 5' ... 34 4.6 2 (AP001373) Homo sapiens genomic DNA, chromosome 18q21 clone:... 30 4.7 2 (AC007859) Homo sapiens, clone RP11-41A1, complete sequence. 30 4.7 2 (AC141707) Apis mellifera clone CH224-56H8, WORKING DRAFT SE... 38 4.8 2 (AC090383) Homo sapiens chromosome 18, clone RP11-727C1, com... 30 4.8 2 (FC812703) Sr_pASP6_011m05_SP6 S. ratti mixed stage pAMP Str... 38 4.8 2 (EA645108) Sequence 23987 from patent US 7365185. 32 5.1 2 (BJ365598) Dictyostelium discoideum cDNA clone:ddc35m20, 5' ... 34 5.2 2 (BJ420657) Dictyostelium discoideum cDNA clone:ddv40c06, 5' ... 34 5.5 2 (CT841536) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.5 2 (AM470078) Vitis vinifera contig VV78X151540.10, whole genom... 30 5.8 2 (EJ311774) 1095403013892 Global-Ocean-Sampling_GS-27-01-01-1... 38 5.8 2 (FC818353) Sr_pAMT7_011l15_T7 S. ratti mixed stage pAMP Stro... 38 5.9 2 (FC818368) Sr_pAMT7_011m07_T7 S. ratti mixed stage pAMP Stro... 38 5.9 2 (ER969675) AF__Bc0033N19r AF__Bc Aquilegia formosa genomic, ... 32 6.1 2 (DX522575) GH_MBb0047K08r GH_MBb Gossypium hirsutum genomic ... 30 6.1 2 (AF044861) Eurema nicippe large subunit ribosomal RNA gene, ... 30 6.1 2 (AC211507) Homo sapiens BAC clone CH17-20M4 from chromosome ... 36 6.1 2 (CL010432) ZMMBBb0553P15f ZMMBBb (HindIII) Zea mays subsp. m... 30 6.2 2 (ET010203) MUGQ_CH252P312A19T7_CP567_080 CHORI-252 Vervet Mo... 30 6.2 2 (AJ785654) Zygaena chirazica eckweileri partial mitochondria... 32 6.3 2 (AC211539) Homo sapiens BAC clone CH17-130G7 from chromosome... 36 6.5 2 (FC812705) Sr_pASP6_011m07_SP6 S. ratti mixed stage pAMP Str... 38 6.6 2 (FC812693) Sr_pASP6_011l15_SP6 S. ratti mixed stage pAMP Str... 38 6.6 2 (AC224044) Bos taurus clone CH240-451L4, WORKING DRAFT SEQUE... 38 6.8 3 (FC816358) Sr_pAMT7_05o11_T7 S. ratti mixed stage pAMP Stron... 38 7.0 2 (FI226535) CccaBa042-B6TV CccABa Cajanus cajan genomic clone... 36 7.1 2 (ER335126) 1092344299024 Global-Ocean-Sampling_GS-34-01-01-1... 32 7.3 2 (EJ204748) 1092344332159 Global-Ocean-Sampling_GS-27-01-01-1... 32 7.3 2 (EK225256) 1095460156240 Global-Ocean-Sampling_GS-31-01-01-1... 32 7.7 2 (EJ968247) 1093022060570 Global-Ocean-Sampling_GS-30-02-01-1... 32 7.8 2 (AC210137) Populus trichocarpa clone POP109-O13, complete se... 42 7.9 3 (AL357792) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 8.0 3 (EJ462937) 1093023092008 Global-Ocean-Sampling_GS-28-01-01-1... 38 8.1 2 (AC160478) Bos taurus clone CH240-94P14, WORKING DRAFT SEQUE... 42 8.5 3 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 8.9 3 (AC024843) Caenorhabditis elegans cosmid Y61A9LA, complete s... 38 9.1 2 (CT990606) Zebrafish DNA sequence from clone CH211-271L9 in ... 42 9.7 1 (CR392341) Zebrafish DNA sequence from clone CH211-222E20 in... 42 9.7 1 (BX296525) Zebrafish DNA sequence from clone CH211-252F24 in... 42 9.7 1 (BX004831) Zebrafish DNA sequence from clone BUSM1-143H6 in ... 42 9.7 1 (BX001033) Zebrafish DNA sequence from clone CH211-286F4 in ... 42 9.7 1 (AC144713) Danio rerio clone CH211-6O1, complete sequence. 42 9.7 1 (BV262955) S235P696FD6.T0 ItalianGreyhound Canis familiaris ... 42 9.7 1 (BS000075) Pan troglodytes chromosome 22 clone:RP43-111A01, ... 42 9.7 1 (AP006161) Oryza sativa Japonica Group genomic DNA, chromoso... 42 9.7 1 (AF035536) Spinacia oleracea cold acclimation protein (CAP16... 42 9.7 1 (AF035535) Spinacia oleracea cold acclimation protein (CAP16... 42 9.7 1 (AC151673) Medicago truncatula chromosome 8 clone mth2-2k12,... 42 9.7 1 (AC125481) Medicago truncatula clone mth2-15n13, complete se... 42 9.7 1 (GC559021) Sequence 2732 from patent US 7416862. 42 9.7 1 (FB318691) Sequence 1 from Patent EP1854885. 42 9.7 1 (EA076186) Sequence 3544 from patent US 7183083. 42 9.7 1 (DI004811) Chlamydia pneumoniae genomic sequence and polypep... 42 9.7 1 (CS598541) Sequence 1 from Patent EP1792995. 42 9.7 1 (AX300389) Sequence 1 from Patent WO0185972. 42 9.7 1 (AX145344) Sequence 4066 from Patent WO0134809. 42 9.7 1 (AR935503) Sequence 1 from patent US 7101963. 42 9.7 1 (AR889883) Sequence 3544 from patent US 7060458. 42 9.7 1 (AR607478) Sequence 1 from patent US 6822071. 42 9.7 1 (AR485980) Sequence 4066 from patent US 6703492. 42 9.7 1 (AR310754) Sequence 1 from patent US 6559294. 42 9.7 1 (AR058188) Sequence 3 from patent US 5837545. 42 9.7 1 (Z81463) Caenorhabditis elegans Cosmid C06B8. 42 9.7 1 (U21308) Caenorhabditis elegans cosmid ZK1290, complete sequ... 42 9.7 1 (AL772363) Human DNA sequence from clone RP11-974F22 on chro... 42 9.7 1 (AL390793) Human DNA sequence from clone RP13-192B13 on chro... 42 9.7 1 (AC096522) Rattus norvegicus clone CH230-191H24, *** SEQUENC... 42 9.7 1 (FP017141) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.7 1 (CU914359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.7 1 (CU896606) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.7 1 (CU862058) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.7 1 (CU467595) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.7 1 (CT997804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.7 1 (CT030138) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 9.7 1 (CT030047) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 9.7 1 (AC224551) Bos taurus clone CH240-482G3, WORKING DRAFT SEQUE... 42 9.7 1 (AC208848) Zea mays chromosome 5 clone CH201-402E12; ZMMBBc0... 42 9.7 1 (AC187907) Zea mays chromosome 5 clone CH201-158O18; ZMMBBc0... 42 9.7 1 (AC181972) Medicago truncatula chromosome 8 clone mth2-43h18... 42 9.7 1 (AC173571) Bos taurus clone CH240-526G1, WORKING DRAFT SEQUE... 42 9.7 1 (AC173382) Bos taurus clone CH240-524C16, WORKING DRAFT SEQU... 42 9.7 1 (AZ691837) ENTKL72TF Entamoeba histolytica Sheared DNA Entam... 42 9.7 1 (AQ742336) HS_5383_B2_H02_SP6 RPCI-11 Human Male BAC Library... 42 9.7 1 (FH665429) CHO_OF5012xf09r1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 9.7 1 (FH548264) CHO_OF4782xn12r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.7 1 (FH548207) CHO_OF4782xn12f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.7 1 (FH344043) CHO_OF4631xm11f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.7 1 (ET973094) CHO_OF704xn04r1.ab1 CHO_OF Nicotiana tabacum geno... 42 9.7 1 (ET835796) CHO_OF585xl14f2.ab1 CHO_OF Nicotiana tabacum geno... 42 9.7 1 (ER450226) 1092963846862 Global-Ocean-Sampling_GS-35-01-01-1... 42 9.7 1 (ER419458) 1092963694439 Global-Ocean-Sampling_GS-35-01-01-1... 42 9.7 1 (ER392978) 1095337030049 Global-Ocean-Sampling_GS-34-01-01-1... 42 9.7 1 (ER349663) 1092346000808 Global-Ocean-Sampling_GS-34-01-01-1... 42 9.7 1 (EK417116) 1095515471429 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EK414909) 1095506186740 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EK408314) 1095505102009 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EK348521) 1095467613595 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EK306667) 1095462383414 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EK247599) 1095460264760 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EK184382) 1095458138415 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.7 1 (EJ945839) 1093018912777 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.7 1 (EJ839982) 1093017824786 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.7 1 (EJ465940) 1095403007842 Global-Ocean-Sampling_GS-28-01-01-1... 42 9.7 1 (EJ184247) 1092344142934 Global-Ocean-Sampling_GS-27-01-01-1... 42 9.7 1 (EJ122632) 1092343380597 Global-Ocean-Sampling_GS-27-01-01-1... 42 9.7 1 (DH414859) Oryzias latipes Fosmid clone:GOLWFno822_j09, reve... 42 9.7 1 (CZ932694) 252557 Tomato EcoRI BAC Library Solanum lycopersi... 42 9.7 1 (CZ430606) OA_BBa0097K03.f OA_BBa Oryza alta genomic clone O... 42 9.7 1 (CG684688) ZMMBBc0160H23f ZMMBBc (EcoRI) Zea mays subsp. may... 42 9.7 1 (CG091519) PUIIA49TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 42 9.7 1 (CG028406) CHGAO82TR CHGA Cleome hassleriana genomic clone C... 42 9.7 1 (BZ716145) OGEAB21TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 9.7 1 (BZ716136) OGEAB21TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 9.7 1 (BZ538663) OGAEN32TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 42 9.7 1 (EG558185) CR02015D08 Leaf CR02 cDNA library Catharanthus ro... 42 9.7 1 (DC864563) Samia cynthia ricini cDNA, clone: I09A02NGRL0006_... 42 9.7 1 (DC860543) Samia cynthia ricini cDNA, clone: S13A01NGRL0007_... 42 9.7 1 (CU603428) Theobroma cacao, mRNA sequence (KZ0AAR1YG13). 42 9.7 1 (CB564461) AGENCOURT_13320532 NICHD_XGC_Tad2 Xenopus laevis ... 42 9.7 1 (BU133013) 603121579F1 CSEQCHL22 Gallus gallus cDNA clone Ch... 42 9.7 1 (FL576541) cembMI0173 cDNA library from leaves of Gossypium ... 42 9.7 1 (FE937003) AHAI-aaa44b03.b2 Pristionchus_pacificus_AHAI1_EST... 42 9.7 1 (AW466289) SWAMCAC21E09SK Brugia malayi adult male cDNA (SAW... 42 9.7 1 (EU497962) Streptococcus equinus bovicin HJ50 biosynthesis g... 42 9.7 1 (BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome. 42 9.7 1 (BA000008) Chlamydophila pneumoniae J138 genomic DNA, comple... 42 9.7 1 (AF270026) Staphylococcus epidermidis strain SR1 clone step.... 42 9.7 1 (AE015929) Staphylococcus epidermidis ATCC 12228, complete g... 42 9.7 1 (AE002161) Chlamydophila pneumoniae AR39, complete genome. 42 9.7 1 (AE001363) Chlamydophila pneumoniae CWL029, complete genome. 42 9.7 1 (AB232046) Streptococcus thermophilus tepA gene for thermoph... 42 9.7 1
>(AU072596) Dictyostelium discoideum slug cDNA, clone SSA345. Length = 240
Score = 145 bits (73), Expect(2) = 6e-41 Identities = 73/73 (100%) Strand = Plus / Plus
Query: 168 gaaaatactatttatataaaaatattagagttgtttttccaaatagaatgccagatgaaa 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 gaaaatactatttatataaaaatattagagttgtttttccaaatagaatgccagatgaaa 227
Query: 228 tggaaaaattaaa 240 ||||||||||||| Sbjct: 228 tggaaaaattaaa 240
Score = 54.0 bits (27), Expect(2) = 6e-41 Identities = 27/27 (100%) Strand = Plus / Plus
Query: 134 gctattcatcttagatttatatgtgtg 160 ||||||||||||||||||||||||||| Sbjct: 134 gctattcatcttagatttatatgtgtg 160
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 217,711,797 Number of extensions: 17923449 Number of successful extensions: 1993715 Number of sequences better than 10.0: 211 Length of query: 256 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 233 Effective length of database: 99,442,330,388 Effective search space: 23170062980404 Effective search space used: 23170062980404 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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