Contig-U04364-1
Contig ID Contig-U04364-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Contig-U04364-1Q.Seq.d
TATTACTTGTTTTAATTATTTATTTTATTTAAAAATGAAATTATTTATAT
TATTAATTTTATTAAATATTACAATATTATTTTCCAGTAATTTATTTGTT
AAAGCCAACAACCAAGTGGGTTGCGAAATTTGTGAAATGGTAACCACATT
TTTAGAAGATAAATTGGCAAATAGTAATGTTGAAACTAATATTAGTGAAG
AATTAATGAAACTATGTAATTACATTCCATCAAACTATCAAACCATATGT
AATAATTTAATTGAAAATAATATTGATTCAATTATTAAATCCTTTGAAAA
TAATGAAACCCCAACAATAATTTGCGATCAACTTGGATTATGTTCACAAT
CTTCATCTTCATCATCAAACTTTGATACCATCCAAGAAACTTCTTCATCA
TCATCATCATCATCATCATCAGATCTCCCATCAGTAGGATGTTTAATTTG
TGAGTTCATTGTCCAAAAGGTTGAGAGTTATATTGAAGTTAATGCAACAC
AATCTGAAATTGAATATTTCTTAGATCAAGATTGTAATAAATTTGGTGGT
GGTTATGCTGGTGAATGCGTAGTTTATGTAAATCAATATGTACCCCAATT
GGTAAATTACTTATCATACAATCAAAAACCTGAAAAAGCTTGCAGTGAAA
TTAAAGCTTGTCCATCATCCTCTTTTTAATTTTTATTATTATTTCCATTT
AAATAAATCCAAAAATAAA

Gap no gap
Contig length 719
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2326990
End point 2326271
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U04364
List of clone(s)

est1=SSM282E,1,720
est2=SSA315Z,99,718
Translated Amino Acid sequence
ITCFNYLFYLKMKLFILLILLNITILFSSNLFVKANNQVGCEICEMVTTFLEDKLANSNV
ETNISEELMKLCNYIPSNYQTICNNLIENNIDSIIKSFENNETPTIICDQLGLCSQSSSS
SSNFDTIQETSSSSSSSSSSDLPSVGCLICEFIVQKVESYIEVNATQSEIEYFLDQDCNK
FGGGYAGECVVYVNQYVPQLVNYLSYNQKPEKACSEIKACPSSSF*flllfpfk*iqk*


Translated Amino Acid sequence (All Frames)
Frame A:
yylf*lfilfkneiiyiinfikyyniifq*fic*sqqpsglrnl*ngnhifrr*igk**c
*n*y**rinetm*lhsiklsnhm**fn*k*y*fny*il*k**npnnnlrstwimftifif
iikl*yhprnffiiiiiiiirspisrmfnl*vhcpkg*ely*s*cnti*n*iflrsrl**
iwwwlcw*mrslcksictpigklliiqskt*kslq*n*slsiilflifiiisi*inpki


Frame B:
ITCFNYLFYLKMKLFILLILLNITILFSSNLFVKANNQVGCEICEMVTTFLEDKLANSNV
ETNISEELMKLCNYIPSNYQTICNNLIENNIDSIIKSFENNETPTIICDQLGLCSQSSSS
SSNFDTIQETSSSSSSSSSSDLPSVGCLICEFIVQKVESYIEVNATQSEIEYFLDQDCNK
FGGGYAGECVVYVNQYVPQLVNYLSYNQKPEKACSEIKACPSSSF*flllfpfk*iqk*


Frame C:
llvliiyfi*k*nylyy*fy*ilqyyfpviyllkpttkwvakfvkw*phf*kinwqivml
klilvkn**nyvitfhqtikpyvii*lkiiliqllnplkimkpqq*fainldyvhnlhlh
hqtlipskkllhhhhhhhhqishq*dv*fvsslskrlrvilklmqhnlklnis*ikivin
lvvvmlvna*fm*inmypnw*ityhtiknlkklavklklvhhplfnfyyyfhlnksknk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04364-1 (Contig-U04364-1Q)
/CSM_Contig/Contig-U04364-1Q.Seq.d
(719 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Conti... 591 e-169
Contig-U05913-1 (Contig-U05913-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U14073-1 (Contig-U14073-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U13827-1 (Contig-U13827-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U12806-1 (Contig-U12806-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12295-1 (Contig-U12295-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U01978-1 (Contig-U01978-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14523-1 (Contig-U14523-1Q) /CSM_Contig/Conti... 34 0.20

>Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Contig-U04364-1Q.Seq.d
Length = 719

Score = 591 bits (298), Expect = e-169
Identities = 298/298 (100%)
Strand = Plus / Plus


Query: 97 tgttaaagccaacaaccaagtgggttgcgaaatttgtgaaatggtaaccacatttttaga 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tgttaaagccaacaaccaagtgggttgcgaaatttgtgaaatggtaaccacatttttaga 156


Query: 157 agataaattggcaaatagtaatgttgaaactaatattagtgaagaattaatgaaactatg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agataaattggcaaatagtaatgttgaaactaatattagtgaagaattaatgaaactatg 216


Query: 217 taattacattccatcaaactatcaaaccatatgtaataatttaattgaaaataatattga 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 taattacattccatcaaactatcaaaccatatgtaataatttaattgaaaataatattga 276


Query: 277 ttcaattattaaatcctttgaaaataatgaaaccccaacaataatttgcgatcaacttgg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttcaattattaaatcctttgaaaataatgaaaccccaacaataatttgcgatcaacttgg 336


Query: 337 attatgttcacaatcttcatcttcatcatcaaactttgataccatccaagaaacttct 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 attatgttcacaatcttcatcttcatcatcaaactttgataccatccaagaaacttct 394


Score = 591 bits (298), Expect = e-169
Identities = 298/298 (100%)
Strand = Plus / Plus


Query: 422 gatctcccatcagtaggatgtttaatttgtgagttcattgtccaaaaggttgagagttat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gatctcccatcagtaggatgtttaatttgtgagttcattgtccaaaaggttgagagttat 481


Query: 482 attgaagttaatgcaacacaatctgaaattgaatatttcttagatcaagattgtaataaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attgaagttaatgcaacacaatctgaaattgaatatttcttagatcaagattgtaataaa 541


Query: 542 tttggtggtggttatgctggtgaatgcgtagtttatgtaaatcaatatgtaccccaattg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttggtggtggttatgctggtgaatgcgtagtttatgtaaatcaatatgtaccccaattg 601


Query: 602 gtaaattacttatcatacaatcaaaaacctgaaaaagcttgcagtgaaattaaagcttgt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtaaattacttatcatacaatcaaaaacctgaaaaagcttgcagtgaaattaaagcttgt 661


Query: 662 ccatcatcctctttttaatttttattattatttccatttaaataaatccaaaaataaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccatcatcctctttttaatttttattattatttccatttaaataaatccaaaaataaa 719


>Contig-U05913-1 (Contig-U05913-1Q) /CSM_Contig/Contig-U05913-1Q.Seq.d
Length = 1167

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus


Query: 253 taatttaattgaaaataatattgatt 278
||||||||||||||||||| ||||||
Sbjct: 1155 taatttaattgaaaataatcttgatt 1130


>Contig-U14073-1 (Contig-U14073-1Q) /CSM_Contig/Contig-U14073-1Q.Seq.d
Length = 619

Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 343 ttcacaatcttcatcttcatcatca 367
||||||||||||||| |||||||||
Sbjct: 213 ttcacaatcttcatcatcatcatca 237


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,329
Number of Sequences: 6905
Number of extensions: 26329
Number of successful extensions: 3416
Number of sequences better than 10.0: 710
length of query: 719
length of database: 5,674,871
effective HSP length: 16
effective length of query: 703
effective length of database: 5,564,391
effective search space: 3911766873
effective search space used: 3911766873
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.17
Homology vs DNA
Query= Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Contig-U04364-1Q.Seq.d
(719 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU039020) Dictyostelium discoideum slug cDNA, clone SSM282. 591 0.0 2
(C83832) Dictyostelium discoideum slug cDNA, clone SSA315. 589 0.0 2
(AU074866) Dictyostelium discoideum slug cDNA, clone SSM282. 283 5e-72 1
(BV066226) S212P60433FD4.T0 CZECHII/Ei Mus musculus STS geno... 54 0.008 1
(AL928788) Mouse DNA sequence from clone RP24-294K11 on chro... 54 0.008 1
(FI005813) CHO_OF6898xa10f1.ab1 CHO_OF6 Nicotiana tabacum ge... 54 0.008 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 42 0.010 9
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.015 12
(AL844509) Plasmodium falciparum chromosome 13. 42 0.069 10
(AC223887) Bos taurus clone CH240-455K15, WORKING DRAFT SEQU... 38 0.072 2
(AC155764) Bos taurus clone CH240-29N15, WORKING DRAFT SEQUE... 38 0.074 2
(ER611770) 1093016315513 Global-Ocean-Sampling_GS-36-01-01-2... 38 0.092 2
(AF126309) Conicera similis 12S ribosomal RNA gene, partial ... 50 0.12 1
(AL162386) Human DNA sequence from clone RP11-272P10 on chro... 50 0.12 1
(EJ383132) 1092963776085 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.12 1
(CZ541057) SRAA-aad35h03.b1 Strongyloides ratti whole genome... 50 0.12 1
(BH980016) odf01c04.b1 B.oleracea002 Brassica oleracea genom... 50 0.12 1
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.12 8
(AC176225) Strongylocentrotus purpuratus clone R3-3062J23, W... 46 0.16 3
(AC218232) Bos taurus clone CH240-28C2, WORKING DRAFT SEQUEN... 36 0.26 2
(AB070264) Bombyx mori mitochondrial DNA, complete genome, s... 44 0.34 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 0.34 14
(EC825579) SME00003860 esmbsro2 Sawyeria marylandensis cDNA,... 36 0.35 2
(EC819956) SME00004323 esmbsro2 Sawyeria marylandensis cDNA,... 36 0.35 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 0.37 9
(AC160275) Bos taurus clone CH240-81P19, WORKING DRAFT SEQUE... 42 0.47 6
(BX005299) Zebrafish DNA sequence from clone CH211-107C24. 48 0.47 1
(AL732294) Mouse DNA sequence from clone RP23-59N7 on chromo... 48 0.47 1
(AC153572) Mus musculus 10 BAC RP23-187O15 (Roswell Park Can... 48 0.47 1
(AC091606) Mus Musculus Strain C57BL6/J chromosome X BAC, RP... 48 0.47 1
(AC124218) Medicago truncatula clone mth2-30b20, complete se... 48 0.47 1
(AC206375) Saimiri boliviensis boliviensis clone CH254-41E4,... 48 0.47 1
(AC200822) Triticum aestivum clone TAACSPALLhA_0961O04, *** ... 48 0.47 1
(AC180931) Strongylocentrotus purpuratus clone R3-3061I14, W... 48 0.47 1
(BH553569) BOHGN55TF BOHG Brassica oleracea genomic clone BO... 48 0.47 1
(FI271022) CccaBb049-M21JR CccABb Cajanus cajan genomic clon... 48 0.47 1
(FI251664) CccaBb031-J24JF CccABb Cajanus cajan genomic clon... 48 0.47 1
(CZ540887) SRAA-aad34h03.b1 Strongyloides ratti whole genome... 48 0.47 1
(CR312462) mte1-35E3RM1 BAC end, cultivar Jemalong A17 of Me... 48 0.47 1
(DY227173) ID0AAK10YG06CM1 ApHL3SD Acyrthosiphon pisum cDNA ... 48 0.47 1
(BJ337835) Dictyostelium discoideum cDNA clone:dda59l03, 5' ... 48 0.47 1
(FF327096) 280431202 Pea aphid whole body normalized full le... 48 0.47 1
(FF307905) 279370827 Pea aphid whole body normalized full le... 48 0.47 1
(FF292149) 279277659 Pea aphid whole body normalized full le... 48 0.47 1
(EX634806) 256597511 Pea aphid whole body normalized full le... 48 0.47 1
(EX619461) 255408926 Pea aphid whole body normalized full le... 48 0.47 1
(EX611168) 255374598 Pea aphid whole body normalized full le... 48 0.47 1
(EV104157) 0095849 Brassica napus Leaf library Brassica napu... 48 0.47 1
(AC074237) Homo sapiens chromosome 18, clone RP11-333K18, co... 44 0.80 3
(AC209119) Chlorocebus aethiops clone CH252-495A3, WORKING D... 40 0.82 4
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.89 8
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 0.93 7
(AC166850) Bos taurus clone CH240-76C18, WORKING DRAFT SEQUE... 36 0.99 2
(AL356152) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 1.0 4
(AB083339) Bombyx mori mitochondrial DNA, complete genome, s... 42 1.2 2
(AF149768) Bombyx mori mitochondrion, complete genome. 42 1.2 2
(AZ671723) ENTKZ09TR Entamoeba histolytica Sheared DNA Entam... 44 1.3 2
(EJ238058) 1095323009725 Global-Ocean-Sampling_GS-27-01-01-1... 32 1.3 2
(ER446627) 1092963833755 Global-Ocean-Sampling_GS-35-01-01-1... 42 1.3 2
(AL135744) Human chromosome 14 DNA sequence BAC R-524O1 of l... 42 1.3 5
(EC819036) SME00007022 esmbsro2 Sawyeria marylandensis cDNA,... 36 1.3 2
(DD392010) Method and nucleic acids for the improved treatme... 32 1.4 6
(CQ807266) Sequence 716 from Patent WO2004035803. 32 1.4 6
(CZ934444) 253308 Tomato EcoRI BAC Library Solanum lycopersi... 40 1.4 2
(AE001402) Plasmodium falciparum 3D7 chromosome 2 section 39... 40 1.4 4
(AC016466) Homo sapiens clone RP11-13D8, LOW-PASS SEQUENCE S... 44 1.5 4
(AC225421) Tupaia belangeri clone CH275-505G23, WORKING DRAF... 46 1.6 3
(BX950195) Zebrafish DNA sequence from clone CH211-232M10 in... 46 1.8 1
(BX908792) Zebrafish DNA sequence from clone DKEY-58I8 in li... 46 1.8 1
(BX088713) Zebrafish DNA sequence from clone DKEY-1P9 in lin... 46 1.8 1
(AC147971) Gallus gallus BAC clone CH261-79K6 from chromosom... 46 1.8 1
(BV669842) S216P62227RB2.T0 Masuku Pan troglodytes troglodyt... 46 1.8 1
(AL831716) Mouse DNA sequence from clone RP23-280E8 on chrom... 46 1.8 1
(AL163512) Mouse DNA sequence from clone RP21-468E12 on chro... 46 1.8 1
(AC132269) Mus musculus BAC clone RP24-409M22 from chromosom... 46 1.8 1
(AC122508) Mus musculus BAC clone RP24-427G15 from chromosom... 46 1.8 1
(EA754599) Sequence 215 from patent US 7371811. 46 1.8 1
(EA333213) Sequence 5705 from patent US 7306913. 46 1.8 1
(EA333212) Sequence 5704 from patent US 7306913. 46 1.8 1
(CS482712) Sequence 5 from Patent WO2007001259. 46 1.8 1
(BD265984) Schizophrenia associated genes, proteins and bial... 46 1.8 1
(AX346873) Sequence 1944 from Patent WO0200928. 46 1.8 1
(AR894658) Sequence 215 from patent US 7067627. 46 1.8 1
(AR244514) Sequence 215 from patent US 6476208. 46 1.8 1
(AC190102) Canis Familiaris chromosome 26, clone XX-195P12, ... 46 1.8 1
(AL358855) Human DNA sequence from clone RP11-317H7 on chrom... 46 1.8 1
(AL353743) Human DNA sequence from clone RP11-213G2 on chrom... 46 1.8 1
(AL122035) Human chromosome 14 DNA sequence BAC C-2555O16 of... 46 1.8 1
(AE014307) Homo sapiens chromosome 13q34 schizophrenia regio... 46 1.8 1
(AC009158) Homo sapiens chromosome 16 clone RP11-67I10, comp... 46 1.8 1
(AC123445) Rattus norvegicus clone CH230-403G9, *** SEQUENCI... 46 1.8 1
(AC118427) Rattus norvegicus clone CH230-302G9, WORKING DRAF... 46 1.8 1
(AC106267) Rattus norvegicus clone CH230-239K7, *** SEQUENCI... 46 1.8 1
(AC103290) Rattus norvegicus clone CH230-129P2, WORKING DRAF... 46 1.8 1
(AC094819) Rattus norvegicus clone CH230-5J12, WORKING DRAFT... 46 1.8 1
(CU855646) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.8 1
(AC055118) Homo sapiens chromosome 13 clone RP11-172M8, WORK... 46 1.8 1
(CR790364) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.8 1
(BX324192) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 46 1.8 1
(AC232191) Tupaia belangeri clone CH275-585I11, WORKING DRAF... 46 1.8 1
(AC223357) Bos taurus clone CH240-421H15, WORKING DRAFT SEQU... 46 1.8 1
(AC222937) Bos taurus clone CH240-434E18, WORKING DRAFT SEQU... 46 1.8 1
(AC218842) Bos taurus clone CH240-292D3, WORKING DRAFT SEQUE... 46 1.8 1
(AC217753) Tupaia belangeri clone CH275-536G17, WORKING DRAF... 46 1.8 1
(AC181932) Strongylocentrotus purpuratus clone R3-1009I07, W... 46 1.8 1
(AC180129) Strongylocentrotus purpuratus clone R3-4007B13, W... 46 1.8 1
(AC178412) Strongylocentrotus purpuratus clone R3-3112L17, W... 46 1.8 1
(AC172770) Bos taurus clone CH240-266L1, WORKING DRAFT SEQUE... 46 1.8 1
(AC019027) Homo sapiens clone RP11-44K16, WORKING DRAFT SEQU... 46 1.8 1
(ER710014) SB_BBc105-I11.R SB_BBc Sorghum bicolor genomic 3'... 46 1.8 1
(ER466401) 1092963925123 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.8 1
(EK253481) 1095460290787 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.8 1
(EK221793) 1095460143320 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.8 1
(EK105527) 1092963045239 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.8 1
(EJ990357) 1093023043230 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(EJ874701) 1093018362875 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(EJ783260) 1093017295367 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(ED994709) MUGQ_CH252P165G24Sp6_CN203_090 CHORI-252 Vervet M... 46 1.8 1
(DU885254) 400566 Tomato HindIII BAC Library Solanum lycoper... 46 1.8 1
(DE300537) Bombyx mori genomic DNA, BAC clone:BES_055_C04. 46 1.8 1
(DE297341) Bombyx mori genomic DNA, BAC clone:BES_045_L09. 46 1.8 1
(CU083533) Equus caballus GSS, BAC clone CH241-179L22, SP6 e... 46 1.8 1
(CR838375) GR0AAA73BG03FM1 INRA BAC Bos taurus genomic clone... 46 1.8 1
(DV958693) SB03042A2G10.f1 Normalized subtracted Keck-Tagu L... 46 1.8 1
(CN921782) 000409AELA002649HT (AELA) Royal Gala young expand... 46 1.8 1
(CK302409) SB02015A2E05.f1 normalized Keck-Tagu Library SB02... 46 1.8 1
(CK301682) SB02013A1A05.f1 normalized Keck-Tagu Library SB02... 46 1.8 1
(BQ739349) uis5-1 Pb sgSpz/ooSpz subtraction library Plasmod... 46 1.8 1
(BB508481) Mus musculus 10 days lactation, adult female mamm... 46 1.8 1
(FG077038) UI-FF-IF0-abq-o-02-0-UI.r1 Ceratitis capitata emb... 46 1.8 1
(FG069449) UI-FF-IF0-aad-k-13-0-UI.r1 Ceratitis capitata emb... 46 1.8 1
(FE737931) SB06026B1E04.f1 Normalized subtracted Keck-Tagu L... 46 1.8 1
(FE716911) SB03056B2C03.f1 Normalized subtracted Keck-Tagu L... 46 1.8 1
(FE716756) SB03063A1A11.f1 Normalized subtracted Keck-Tagu L... 46 1.8 1
(C83924) Dictyostelium discoideum slug cDNA, clone SSA649. 38 1.9 2
(AC172605) Bos taurus clone CH240-246K14, WORKING DRAFT SEQU... 44 2.1 3
(AM453494) Vitis vinifera contig VV78X251024.4, whole genome... 42 2.2 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 2.2 9
(AC100894) Mus musculus clone RP23-69C6, LOW-PASS SEQUENCE S... 44 2.2 4
(BX248228) Zebrafish DNA sequence from clone RP71-40J23 in l... 42 2.4 2
(AL121584) Human DNA sequence from clone RP11-388K2 on chrom... 42 2.5 2
(AL035476) Plasmodium falciparum MAL4P3. 34 2.5 6
(AU036997) Dictyostelium discoideum slug cDNA, clone SSA728. 38 2.6 2
(AC097072) Rattus norvegicus clone CH230-26P16, *** SEQUENCI... 38 2.7 4
(AC149911) Strongylocentrotus purpuratus clone R3-12A16, WOR... 36 2.7 4
(EU028331) Glycine max clone BAC gmw1-89M01 genomic sequence. 38 2.7 6
(AC091436) Felis catus clone RP86-87J17, complete sequence. 36 2.7 6
(AC007124) Human genomic clone P1-11874, complete sequence. 42 2.8 3
(AC007449) Homo sapiens clone RP11-104A1, WORKING DRAFT SEQU... 42 2.9 2
(CU655960) Zebrafish DNA sequence from clone CH211-237C6 in ... 34 3.0 6
(DL219474) NUCLEIC ACIDS AND PROTEINS FROM STREPTOCOCCUS GRO... 34 3.0 2
(AE009948) Streptococcus agalactiae 2603V/R, complete genome. 34 3.0 2
(CP000114) Streptococcus agalactiae A909, complete genome. 34 3.0 2
(CU457776) Zebrafish DNA sequence from clone DKEY-124N6. 42 3.0 2
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se... 36 3.4 10
(CQ655073) Sequence 12030 from Patent WO0234771. 34 3.4 2
(AX954533) Sequence 1379 from Patent WO03093306. 34 3.4 2
(DX932770) MUGQ_CH252P086P16Sp6_CP90_002 CHORI-252 Vervet Mo... 40 3.4 2
(AU038836) Dictyostelium discoideum slug cDNA, clone SSL543. 38 3.5 2
(AC111671) Rattus norvegicus clone CH230-50J18, *** SEQUENCI... 32 3.5 2
(AC140915) Medicago truncatula chromosome 8 clone mth2-10l24... 32 3.5 6
(BX649536) Zebrafish DNA sequence from clone DKEY-21N8 in li... 32 3.5 2
(ER518548) 1093015536985 Global-Ocean-Sampling_GS-35-01-01-1... 34 3.5 2
(CU466358) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.6 2
(FP102754) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.6 2
(BX465853) Zebrafish DNA sequence from clone DKEY-18F23 in l... 42 3.6 2
(AL766856) Streptococcus agalactiae NEM316 complete genome, ... 34 3.7 2
(AC129419) Rattus norvegicus clone CH230-12F7, WORKING DRAFT... 44 3.8 2
(EU795254) Uncultured bacterium ARCTIC13_G_06 genomic sequence. 36 3.8 4
(AX954534) Sequence 1380 from Patent WO03093306. 34 3.8 2
(AX602202) Sequence 131 from Patent WO02092818. 34 3.8 2
(AC128298) Rattus norvegicus clone CH230-399F9, *** SEQUENCI... 42 4.0 5
(DV613760) EST1216756 Glossina morsitans morsitans Fat body ... 34 4.0 2
(M37892) Tetrahymena thermophila ribosomal protein L21 gene,... 44 4.1 2
(EK270115) 1095462254345 Global-Ocean-Sampling_GS-31-01-01-1... 36 4.2 2
(EY199276) IR24H-P3_C05.AB1 24 hours after attachment adult ... 34 4.2 3
(AL928944) Zebrafish DNA sequence from clone DKEYP-2H4 in li... 38 4.4 3
(AC229697) Medicago truncatula clone mth2-26c18, WORKING DRA... 36 4.4 5
(AX608393) Sequence 6322 from Patent WO02092818. 34 4.6 2
(FB695323) Sequence 17559 from Patent WO2006069200. 34 4.6 2
(DL215616) NUCLEIC ACIDS AND PROTEINS FROM STREPTOCOCCUS GRO... 34 4.6 2
(CQ646294) Sequence 3251 from Patent WO0234771. 34 4.6 2
(DX528210) GH_MBb0049A16r GH_MBb Gossypium hirsutum genomic ... 32 4.7 2
(AC095035) Homo sapiens chromosome 1 clone RP11-159J16, comp... 42 4.7 6
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 4.7 10
(AC232435) Medicago truncatula chromosome 7 clone mth2-77o20... 40 4.7 3
(EY199363) IR24H-P4_C09.AB1 24 hours after attachment adult ... 34 4.8 3
(CL353791) RPCI44_403F20.f RPCI-44 Sus scrofa genomic clone ... 34 4.8 2
(EK149285) 1095456040561 Global-Ocean-Sampling_GS-31-01-01-1... 32 4.8 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 4.8 8
(EJ300678) 1095390010529 Global-Ocean-Sampling_GS-27-01-01-1... 32 5.1 3
(CU915354) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 3
(CR931737) Medicago truncatula chromosome 5 clone mth2-65j24... 36 5.1 4
(AC098692) Homo sapiens chromosome 1 clone RP11-60K15, compl... 36 5.2 4
(EJ082860) 1095460063754 Global-Ocean-Sampling_GS-26-01-01-1... 34 5.4 3
(AC172512) Bos taurus clone CH240-302H19, WORKING DRAFT SEQU... 42 5.4 3
(CU459160) Zebrafish DNA sequence from clone CH211-221C23 in... 34 5.5 5
(AC022416) Homo sapiens chromosome 5 clone CTC-489P21, compl... 40 6.0 3
(BH134775) ENTNC56TR Entamoeba histolytica Sheared DNA Entam... 32 6.1 3
(AJ426041) Chrysomya megacephala mitochondrial NADH2 gene, C... 36 6.1 3
(AJ422212) Lucilia sericata complete mitochondrial genome. 38 6.2 3
(AC232250) Triticum aestivum clone TAACSPALLhA_0769D17, *** ... 40 6.2 2
(AM481956) Vitis vinifera contig VV78X140873.16, whole genom... 36 6.7 2
(AL352978) Human chromosome 14 DNA sequence BAC C-3059L23 of... 44 6.8 4
(AC233387) Solanum tuberosum chromosome 1 clone RH045A03, **... 44 6.8 2
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34... 36 7.0 3
(CO282663) EK160928.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 34 7.1 2
(CU694370) Zebrafish DNA sequence from clone CH73-269F15 in ... 36 7.1 3
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome. 32 7.2 13
(AC147378) Homo sapiens chromosome UNK clone GS1-426M12, ***... 44 7.2 3
(AB194414) Drosophila parabipectinata osp, siren1, siren2, A... 36 7.3 3
(AC027784) Homo sapiens chromosome 15 clone RP11-173F1 map 1... 34 7.3 3
(CT573467) Zebrafish DNA sequence from clone DKEY-203O21 in ... 44 7.3 1
(CR846099) Zebrafish DNA sequence from clone DKEY-182M23 in ... 44 7.3 1
(CR769768) Zebrafish DNA sequence from clone DKEY-222H21 in ... 44 7.3 1
(CR376745) Zebrafish DNA sequence from clone CH211-147K10 in... 44 7.3 1
(BX927298) Zebrafish DNA sequence from clone CH211-15J1 in l... 44 7.3 1
(BX927241) Zebrafish DNA sequence from clone DKEY-184P18 in ... 44 7.3 1
(BX649429) Zebrafish DNA sequence from clone DKEY-1H4 in lin... 44 7.3 1
(BX511164) Zebrafish DNA sequence from clone DKEY-63J1 in li... 44 7.3 1
(AC195266) Gallus gallus BAC clone CH261-140B17 from chromos... 44 7.3 1
(AC187593) Gallus gallus BAC clone CH261-110P23 from chromos... 44 7.3 1
(BN000872) TPA: Mus musculus immunoglobulin heavy chain vari... 44 7.3 1
(G35044) STS NRU01-32s clone NRU01-32, sequence tagged site. 44 7.3 1
(G35042) STS NRU01-18s clone NRU01-18, sequence tagged site. 44 7.3 1
(GF033564) pRRL2:Newb:20080411:413564 USMARC Pig Breed SNP D... 44 7.3 1
(BV843999) pRRL2:Newb:20080411:225052 USMARC Pig Breed SNP D... 44 7.3 1
(CT025605) Mouse DNA sequence from clone RP23-259D11 on chro... 44 7.3 1
(BX004851) Mouse DNA sequence from clone RP23-451H12 on chro... 44 7.3 1
(AL844149) Mouse DNA sequence from clone RP23-194D5 on chrom... 44 7.3 1
(AC154792) Mus musculus BAC clone RP23-85E10 from chromosome... 44 7.3 1
(AC140419) Mus musculus BAC clone RP24-435P9 from chromosome... 44 7.3 1
(AC133200) Mus musculus BAC clone RP23-292C19 from 3, comple... 44 7.3 1
(AC073563) Mus musculus strain C57BL/6J chromosome 12 clone ... 44 7.3 1
(AC192922) Rhesus macaque BAC clone CH250-88H12 from chromos... 44 7.3 1
(AC189103) Pongo abelii BAC clone CH276-41H12 from chromosom... 44 7.3 1
(AC188404) Callithrix jacchus BAC clone CH259-82H12 from chr... 44 7.3 1
(AC161614) Pan troglodytes BAC clone CH251-575E11 from chrom... 44 7.3 1
(AC147932) Saimiri boliviensis boliviensis clone CH254-331B1... 44 7.3 1
(AC147845) Saimiri boliviensis boliviensis clone CH254-335K1... 44 7.3 1
(AC146010) Pan troglodytes BAC clone RP43-16O20 from chromos... 44 7.3 1
(EU369760) Carica papaya X chromosome BAC clone DM10G24, com... 44 7.3 1
(EF661023) Carica papaya clone BAC PH61H02, complete sequence. 44 7.3 1
(AP009779) Lotus japonicus genomic DNA, clone: LjT34L14, TM1... 44 7.3 1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 44 7.3 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 44 7.3 1
(AP006233) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.3 1
(AP005485) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.3 1
(AP004611) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.3 1
(AP004561) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.3 1
(AP003276) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.3 1
(AM485840) Vitis vinifera contig VV78X218881.4, whole genome... 44 7.3 1
(AM449920) Vitis vinifera contig VV78X086819.17, whole genom... 44 7.3 1
(AM437585) Vitis vinifera contig VV78X260544.7, whole genome... 44 7.3 1
(AM431263) Vitis vinifera contig VV78X265007.12, whole genom... 44 7.3 1
(AM423909) Vitis vinifera contig VV78X250530.4, whole genome... 44 7.3 1
(AK121802) Oryza sativa Japonica Group cDNA clone:J033097J11... 44 7.3 1
(AK104999) Oryza sativa Japonica Group cDNA clone:001-003-E1... 44 7.3 1
(AC217587) Populus trichocarpa clone POP031-F05, complete se... 44 7.3 1
(AC146572) Medicago truncatula clone mth2-104c10, complete s... 44 7.3 1
(EA738953) Sequence 10399 from patent US 7368527. 44 7.3 1
(EA719771) Sequence 98650 from patent US 7365185. 44 7.3 1
(EA699481) Sequence 78360 from patent US 7365185. 44 7.3 1
(EA669920) Sequence 48799 from patent US 7365185. 44 7.3 1
(EA333283) Sequence 5775 from patent US 7306913. 44 7.3 1
(DL235908) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 44 7.3 1
(DL235494) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 44 7.3 1
(DD164607) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 44 7.3 1
(DD158955) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 44 7.3 1
(BD460563) Diagnosis of Diseases Associated with Cell Cycle. 44 7.3 1
(BD452799) Diagnosis of Diseases Associated with tumor suppr... 44 7.3 1
(BD452798) Diagnosis of Diseases Associated with tumor suppr... 44 7.3 1
(BD452485) Diagnosis of Diseases Associated with Cell Cycle. 44 7.3 1
(AX695827) Sequence 1454 from Patent WO03008583. 44 7.3 1
(AX695413) Sequence 1040 from Patent WO03008583. 44 7.3 1
(AX346872) Sequence 1943 from Patent WO0200928. 44 7.3 1
(AX345506) Sequence 577 from Patent WO0200928. 44 7.3 1
(AX344805) Sequence 230 from Patent WO0200927. 44 7.3 1
(AX344804) Sequence 229 from Patent WO0200927. 44 7.3 1
(AX252099) Sequence 360 from Patent WO0168911. 44 7.3 1
(AX251278) Sequence 246 from Patent WO0168912. 44 7.3 1
(AX251277) Sequence 245 from Patent WO0168912. 44 7.3 1
(GM883758) Sequence 102 from Patent WO2008137090. 44 7.3 1
(GC701436) Sequence 16681 from patent US 6812339. 44 7.3 1
(FJ384796) Bombyx mandarina strain Qingzhou mitochondrion, c... 44 7.3 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 44 7.3 1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 44 7.3 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 44 7.3 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 7.3 1
(AC007772) Drosophila melanogaster clone BACR19P12, complete... 44 7.3 1
(Z84722) Human DNA sequence from cosmid GG4 from a contig fr... 44 7.3 1
(EU600171) Homo sapiens v-raf murine sarcoma viral oncogene ... 44 7.3 1
(DQ230988) Homo sapiens SWI/SNF related, matrix associated, ... 44 7.3 1
(CU458743) Human DNA sequence from clone XX-NCIH1770_4P10. 44 7.3 1
(CT943661) Human DNA sequence from clone XX-NCIH1770_6J16. 44 7.3 1
(AY320034) Homo sapiens glucokinase (hexokinase 4) regulator... 44 7.3 1
(AP000349) Homo sapiens genomic DNA, chromosome 22q11.2, clo... 44 7.3 1
(AL590302) Human DNA sequence from clone RP11-252P19 on chro... 44 7.3 1
(AL512663) Human DNA sequence from clone RP11-356H7 on chrom... 44 7.3 1
(AL391730) Human DNA sequence from clone RP11-348A7 on chrom... 44 7.3 1
(AL360268) Human DNA sequence from clone RP11-379C10 on chro... 44 7.3 1
(AL358876) Human DNA sequence from clone RP11-431K24 on chro... 44 7.3 1
(AL356585) Human DNA sequence from clone RP11-341D18 on chro... 44 7.3 1
(AL139100) Human DNA sequence from clone RP3-375P9 on chromo... 44 7.3 1
(AL137229) Human chromosome 14 DNA sequence BAC C-2246N19 of... 44 7.3 1
(AL133231) Human DNA sequence from clone RP5-867F11 on chrom... 44 7.3 1
(AL121992) Human DNA sequence from clone RP4-680D5 on chromo... 44 7.3 1
(AL049830) Human chromosome 14 DNA sequence BAC R-829H16 of ... 44 7.3 1
(AE006462) Homo sapiens 16p13.3 sequence section 1 of 8. 44 7.3 1
(AC211498) Homo sapiens BAC clone CH17-21K19 from chromosome... 44 7.3 1
(AC211492) Homo sapiens BAC clone CH17-222M9 from chromosome... 44 7.3 1
(AC211491) Homo sapiens BAC clone CH17-220H16 from chromosom... 44 7.3 1
(AC211486) Homo sapiens BAC clone CH17-232I21 from chromosom... 44 7.3 1
(AC211485) Homo sapiens BAC clone CH17-224P20 from chromosom... 44 7.3 1
(AC211481) Homo sapiens BAC clone CH17-233A17 from chromosom... 44 7.3 1
(AC211439) Homo sapiens BAC clone CH17-392P4 from chromosome... 44 7.3 1
(AC211433) Homo sapiens BAC clone CH17-48P5 from chromosome ... 44 7.3 1
(AC211423) Homo sapiens BAC clone CH17-87M17 from chromosome... 44 7.3 1
(AC138783) Homo sapiens PAC clone RP5-962D3 from 7, complete... 44 7.3 1
(AC134866) Homo sapiens BAC clone RP11-1398B17 from 7, compl... 44 7.3 1
(AC134616) Homo sapiens PAC clone RP4-630L23 from 7, complet... 44 7.3 1
(AC133104) Homo sapiens BAC clone RP11-404J24 from 2, comple... 44 7.3 1
(AC117382) Homo sapiens 3 BAC RP11-102M11 (Roswell Park Canc... 44 7.3 1
(AC115105) Homo sapiens PAC clone RP4-629E22 from 7, complet... 44 7.3 1
(AC110054) Homo sapiens chromosome 15, clone CTD-2116N17, co... 44 7.3 1
(AC109474) Homo sapiens chromosome 5 clone RP11-414I19, comp... 44 7.3 1
(AC105418) Homo sapiens BAC clone RP11-450O3 from 7, complet... 44 7.3 1
(AC103921) Homo sapiens chromosome 3 clone RP11-131O21, comp... 44 7.3 1
(AC103587) Homo sapiens chromosome 3 clone RP11-164G20, comp... 44 7.3 1
(AC099776) Homo sapiens chromosome 3 clone RP11-280I3, compl... 44 7.3 1
(AC096741) Homo sapiens BAC clone RP11-327O17 from 4, comple... 44 7.3 1
(AC095033) Homo sapiens chromosome 1 clone RP11-313A24, comp... 44 7.3 1
(AC092802) Homo sapiens chromosome 1 clone RP11-57H12, compl... 44 7.3 1
(AC083884) Homo sapiens BAC clone RP11-813J7 from 7, complet... 44 7.3 1
(AC074117) Homo sapiens BAC clone RP11-413M20 from 2, comple... 44 7.3 1
(AC025777) Homo sapiens chromosome 5 clone CTD-2331H7, compl... 44 7.3 1
(AC020552) Homo sapiens BAC clone RP11-431K24 from 1, comple... 44 7.3 1
(AC016559) Homo sapiens chromosome 5 clone CTC-422A18, compl... 44 7.3 1
(AC015813) Homo sapiens, clone RP11-159D12, complete sequence. 44 7.3 1
(AC010480) Homo sapiens chromosome 5 clone CTD-2315M5, compl... 44 7.3 1
(AC010145) Homo sapiens BAC clone RP11-355H10 from 2, comple... 44 7.3 1
(AC009967) Homo sapiens BAC clone RP11-401O19 from 2, comple... 44 7.3 1
(AC009237) Homo sapiens BAC clone RP11-440D17 from 2, comple... 44 7.3 1
(AC007246) Homo sapiens BAC clone RP11-288L6 from 2, complet... 44 7.3 1
(AC006995) Homo sapiens BAC clone RP11-396K3 from 7, complet... 44 7.3 1
(AC006347) Homo sapiens PAC clone RP5-839B19 from 7, complet... 44 7.3 1
(AC005283) Homo sapiens PAC clone RP5-1039L24 from 7, comple... 44 7.3 1
(AC005098) Homo sapiens BAC clone CTA-350L10 from 7q11.2, co... 44 7.3 1
(AC005080) Homo sapiens BAC clone CTA-269P13 from 7q11.2, co... 44 7.3 1
(AC004883) Homo sapiens PAC clone RP4-771P4 from 7q11.2, com... 44 7.3 1
(AC162123) Neofelis nebulosa clone CH87-231N4, WORKING DRAFT... 44 7.3 1
(AC159869) Bos taurus clone CH240-79G16, WORKING DRAFT SEQUE... 44 7.3 1
(AC159726) Bos taurus clone CH240-78M6, WORKING DRAFT SEQUEN... 44 7.3 1
(AC153324) Lemur catta clone LB2-199D12, WORKING DRAFT SEQUE... 44 7.3 1
(AC152260) Bos taurus clone CH240-4L7, WORKING DRAFT SEQUENC... 44 7.3 1
(AC152233) Bos taurus clone CH240-8D19, WORKING DRAFT SEQUEN... 44 7.3 1
(AC150028) Canis lupus familiaris clone RP81-169I2, WORKING ... 44 7.3 1
(AC149166) Otolemur garnettii clone CH256-539K15, WORKING DR... 44 7.3 1
(AC148864) Canis lupus familiaris clone RP81-230I7, WORKING ... 44 7.3 1
(AC148589) Pan troglodytes clone rp43-179o21, WORKING DRAFT ... 44 7.3 1
(AC148034) Homo sapiens chromosome UNK clone RP13-286D13, WO... 44 7.3 1
(AC147650) Homo sapiens chromosome UNK clone GS1-365M24, WOR... 44 7.3 1
(AC145750) Homo sapiens chromosome UNK clone RP13-1021P9, **... 44 7.3 1
(AC145544) Homo sapiens chromosome UNK clone RP11-1330I9, WO... 44 7.3 1
(AC141421) Pan troglodytes clone rp43-39m19, WORKING DRAFT S... 44 7.3 1
(AC133966) Homo sapiens chromosome UNK clone RP11-1222A2, WO... 44 7.3 1
(AC129871) Rattus norvegicus clone CH230-105J19, *** SEQUENC... 44 7.3 1
(AC128873) Rattus norvegicus clone CH230-502N13, WORKING DRA... 44 7.3 1
(AC126892) Rattus norvegicus clone CH230-230K6, WORKING DRAF... 44 7.3 1
(AC125335) Homo sapiens chromosome UNK clone RP11-569P24, **... 44 7.3 1
(AC117182) Homo sapiens chromosome UNK clone RP11-453H14, **... 44 7.3 1
(AC116975) Homo sapiens chromosome UNK clone CTD-2228H11, **... 44 7.3 1
(AC116973) Homo sapiens chromosome UNK clone RP13-649I12, **... 44 7.3 1
(AC116972) Homo sapiens chromosome UNK clone RP1-44P10, *** ... 44 7.3 1
(AC111285) Rattus norvegicus clone CH230-55C5, *** SEQUENCIN... 44 7.3 1
(AC103142) Rattus norvegicus clone CH230-40N16, WORKING DRAF... 44 7.3 1
(AC096518) Rattus norvegicus clone CH230-97A8, *** SEQUENCIN... 44 7.3 1
(AC096397) Rattus norvegicus clone CH230-44O15, WORKING DRAF... 44 7.3 1
(AC094558) Rattus norvegicus clone CH230-2N14, WORKING DRAFT... 44 7.3 1
(FP236592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP236368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP102689) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP102430) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP102423) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP074889) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.3 1
(FP067354) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP067341) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(FP015893) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU972392) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU929831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU929613) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU929531) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU928674) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU928565) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU914631) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.3 1
(CU856674) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU694780) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU571110) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(AC091835) Homo sapiens chromosome 5 clone CTD-2055E22, WORK... 44 7.3 1
(AC079332) Homo sapiens chromosome 4 clone RP11-36G9 map 4, ... 44 7.3 1
(AC062026) Homo sapiens chromosome 18 clone RP11-328M2, WORK... 44 7.3 1
(AC061712) Homo sapiens chromosome 10 clone RP11-450O3, WORK... 44 7.3 1
(AC040953) Homo sapiens chromosome 20 clone RP11-147L21 map ... 44 7.3 1
(AC034163) Homo sapiens chromosome 5 clone RP11-414I19, WORK... 44 7.3 1
(AC027520) Homo sapiens chromosome 1 clone RP11-301D3 map 1,... 44 7.3 1
(AC027219) Homo sapiens clone RP11-729P19, WORKING DRAFT SEQ... 44 7.3 1
(AC025976) Homo sapiens chromosome 7 clone RP11-224N21 map 7... 44 7.3 1
(CU468309) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU463348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU463347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU234206) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CR762413) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.3 1
(BX957340) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.3 1
(AC232950) Lama pacos clone CH246-72J16, WORKING DRAFT SEQUE... 44 7.3 1
(AC231000) Bos taurus clone CH240-493H7, WORKING DRAFT SEQUE... 44 7.3 1
(AC224885) Bos taurus clone CH240-473L9, WORKING DRAFT SEQUE... 44 7.3 1
(AC223568) Bos taurus clone CH240-465B6, WORKING DRAFT SEQUE... 44 7.3 1
(AC221135) Bos taurus clone CH240-394G16, WORKING DRAFT SEQU... 44 7.3 1
(AC220482) Bos taurus clone CH240-357G18, WORKING DRAFT SEQU... 44 7.3 1
(AC219443) Bos taurus clone CH240-340L23, WORKING DRAFT SEQU... 44 7.3 1
(AC219392) Bos taurus clone CH240-339B7, WORKING DRAFT SEQUE... 44 7.3 1
(AC215905) Latimeria menadoensis clone VMRC4-37C4, *** SEQUE... 44 7.3 1
(AC211537) Homo sapiens chromosome 7 clone CH17-160P24, WORK... 44 7.3 1
(AC211536) Homo sapiens chromosome 7 clone CH17-154H5, WORKI... 44 7.3 1
(AC211530) Homo sapiens chromosome 7 clone CH17-16O18, WORKI... 44 7.3 1
(AC211459) Homo sapiens chromosome 7 clone CH17-301N21, WORK... 44 7.3 1
(AC211440) Homo sapiens chromosome 7 clone CH17-394H24, WORK... 44 7.3 1
(AC211434) Homo sapiens chromosome 7 clone CH17-50I14, WORKI... 44 7.3 1
(AC211430) Homo sapiens chromosome 7 clone CH17-55D2, WORKIN... 44 7.3 1
(AC211427) Homo sapiens chromosome 7 clone CH17-72I12, WORKI... 44 7.3 1
(AC211264) Zea mays chromosome 1 clone CH201-33G3; ZMMBBc003... 44 7.3 1
(AC210030) Zea mays chromosome 1 clone CH201-524M4; ZMMBBc05... 44 7.3 1
(AC209417) Homo sapiens chromosome 7 clone CH17-266K15, *** ... 44 7.3 1
(AC195501) Gallus gallus chromosome 25 clone CH261-17L3, ***... 44 7.3 1
(AC193797) Pan troglodytes chromosome 12 clone CH251-583M18,... 44 7.3 1
(AC192244) Zea mays chromosome 5 clone CH201-261K11; ZMMBBc0... 44 7.3 1
(AC187442) Callicebus moloch clone LB5-372A24, WORKING DRAFT... 44 7.3 1
(AC173523) Bos taurus clone CH240-182I1, WORKING DRAFT SEQUE... 44 7.3 1
(AC173202) Bos taurus clone CH240-175B6, WORKING DRAFT SEQUE... 44 7.3 1
(AC172948) Bos taurus clone CH240-307B9, WORKING DRAFT SEQUE... 44 7.3 1
(AC171580) Bos taurus clone CH240-270M23, WORKING DRAFT SEQU... 44 7.3 1
(AC166769) Bos taurus clone CH240-42M23, WORKING DRAFT SEQUE... 44 7.3 1
(AC166284) Bos taurus clone CH240-129A10, WORKING DRAFT SEQU... 44 7.3 1
(AC165705) Bos taurus clone CH240-166D9, WORKING DRAFT SEQUE... 44 7.3 1
(AC025484) Homo sapiens clone RP11-252P19, WORKING DRAFT SEQ... 44 7.3 1
(AC019706) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 7.3 1
(AC015693) Homo sapiens chromosome 20 clone RP11-67M6 map 20... 44 7.3 1
(AC012171) Homo sapiens chromosome 16 clone CTD-2536L10, WOR... 44 7.3 1
(AC010911) Homo sapiens clone 6_M_12, LOW-PASS SEQUENCE SAMP... 44 7.3 1
(BX647558) Homo sapiens mRNA; cDNA DKFZp686J19110 (from clon... 44 7.3 1
(BH311590) CH230-62L15.TJ CHORI-230 Segment 1 Rattus norvegi... 44 7.3 1
(AZ937165) 2M0195D18F Mouse 10kb plasmid UUGC2M library Mus ... 44 7.3 1
(AZ670813) ENTKH71TF Entamoeba histolytica Sheared DNA Entam... 44 7.3 1
(AZ547663) ENTFW62TF Entamoeba histolytica Sheared DNA Entam... 44 7.3 1
(FI297037) AdH1149-CPY2-L7TF AdH1 Arachis duranensis genomic... 44 7.3 1
(FH582414) CHO_OF4898xm07f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 7.3 1
(FH557125) CHO_OF4479xa22f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 7.3 1
(ET211331) MUGQ_CH252P412E08T7_CP786_028 CHORI-252 Vervet Mo... 44 7.3 1
(ER489756) 1093015320837 Global-Ocean-Sampling_GS-35-01-01-1... 44 7.3 1
(EK052940) 1092959723945 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.3 1
(AQ216075) HS_3244_B1_D06_T7 CIT Approved Human Genomic Sper... 44 7.3 1
(AM685068) Entamoeba terrapinae GSS, clone terra021d10.p1k. 44 7.3 1
(AM642786) Entamoeba dispar GSS, clone dispar98h05.p1k. 44 7.3 1
(AM639877) Entamoeba dispar GSS, clone dispar70a09.q1k. 44 7.3 1
(AM618876) Entamoeba invadens IP1 GSS, clone inv114g08.q1k. 44 7.3 1
(EJ162576) 1092344054125 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.3 1
(EI801134) MUGQ_CH252P247M06Sp6_CN497_019 CHORI-252 Vervet M... 44 7.3 1
(EI800872) MUGQ_CH252P247A06Sp6_CN497_031 CHORI-252 Vervet M... 44 7.3 1
(EI740271) CHORI5146A24TF BAC library from the primary breas... 44 7.3 1
(EI267071) OR__Ba0075E19.f OR__Ba Oryza rufipogon genomic cl... 44 7.3 1
(EI216135) OR__Ba0006H05.f OR__Ba Oryza rufipogon genomic cl... 44 7.3 1
(DX560992) GH_MBb0070H04r GH_MBb Gossypium hirsutum genomic ... 44 7.3 1
(DX483198) Cpl24890 Papaya Genomic DNA BAC Library Carica pa... 44 7.3 1
(DX478101) Cpl20369 Papaya Genomic DNA BAC Library Carica pa... 44 7.3 1
(DU706298) Bst038825 lambda03 Boechera stricta genomic clone... 44 7.3 1
(DU684727) Bst017263 lambda03 Boechera stricta genomic clone... 44 7.3 1
(DU386004) 1098313116501 CHORI-243 Ovis aries genomic clone ... 44 7.3 1
(DH442283) Macropus eugenii DNA with T7 primer, fosmid clone... 44 7.3 1
(CZ605924) OM__Ba0130J19.f OM__Ba Oryza minuta genomic clone... 44 7.3 1
(CW948407) TcB31.4_H10_T7 Tribolium BAC library Tribolium ca... 44 7.3 1
(CW688341) OG_BBa0048A06.r OG_BBa Oryza glaberrima genomic c... 44 7.3 1
(CU280269) Equus caballus GSS, BAC clone CH241-438H4, T7 end... 44 7.3 1
(CT438197) Sus scrofa genomic clone CH242-342H18, genomic su... 44 7.3 1
(CT078272) Sus scrofa genomic clone CH242-73J21, genomic sur... 44 7.3 1
(CR511890) mth4-28B23FM1 BAC end, cultivar Jemalong A17 of M... 44 7.3 1
(CL840414) OR_CBa0067K11.f OR_CBa Oryza rufipogon genomic cl... 44 7.3 1
(CL836882) OR_CBa0062B20.r OR_CBa Oryza rufipogon genomic cl... 44 7.3 1
(AG516054) Mus musculus molossinus DNA, clone:MSMg01-421G18.... 44 7.3 1
(CL814347) OR_CBa0030O07.f OR_CBa Oryza rufipogon genomic cl... 44 7.3 1
(CL795773) OR_CBa0005L05.r OR_CBa Oryza rufipogon genomic cl... 44 7.3 1
(CL772377) OR_BBa0084P24.f OR_BBa Oryza nivara genomic clone... 44 7.3 1
(CL746714) OR_BBa0111I20.f OR_BBa Oryza nivara genomic clone... 44 7.3 1
(CL718210) OR_BBa0045H15.f OR_BBa Oryza nivara genomic clone... 44 7.3 1
(CL631216) OR_BBa0041L06.f OR_BBa Oryza nivara genomic clone... 44 7.3 1
(CL387653) RPCI44_282E23.f RPCI-44 Sus scrofa genomic clone ... 44 7.3 1
(CL387631) RPCI44_282A23.f RPCI-44 Sus scrofa genomic clone ... 44 7.3 1
(CL363524) RPCI44_388P17.r RPCI-44 Sus scrofa genomic clone ... 44 7.3 1
(CG739314) ZMMBBc0189B01r ZMMBBc (EcoRI) Zea mays subsp. may... 44 7.3 1
(CE547815) tigr-gss-dog-17000366174226 Dog Library Canis lup... 44 7.3 1
(CC586572) CH240_383B22.TARBAC13P2 CHORI-240 Bos taurus geno... 44 7.3 1

>(AU039020) Dictyostelium discoideum slug cDNA, clone SSM282.
Length = 624

Score = 591 bits (298), Expect(2) = 0.0
Identities = 298/298 (100%)
Strand = Plus / Plus


Query: 422 gatctcccatcagtaggatgtttaatttgtgagttcattgtccaaaaggttgagagttat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatctcccatcagtaggatgtttaatttgtgagttcattgtccaaaaggttgagagttat 385


Query: 482 attgaagttaatgcaacacaatctgaaattgaatatttcttagatcaagattgtaataaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attgaagttaatgcaacacaatctgaaattgaatatttcttagatcaagattgtaataaa 445


Query: 542 tttggtggtggttatgctggtgaatgcgtagtttatgtaaatcaatatgtaccccaattg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttggtggtggttatgctggtgaatgcgtagtttatgtaaatcaatatgtaccccaattg 505


Query: 602 gtaaattacttatcatacaatcaaaaacctgaaaaagcttgcagtgaaattaaagcttgt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtaaattacttatcatacaatcaaaaacctgaaaaagcttgcagtgaaattaaagcttgt 565


Query: 662 ccatcatcctctttttaatttttattattatttccatttaaataaatccaaaaataaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccatcatcctctttttaatttttattattatttccatttaaataaatccaaaaataaa 623

Score = 490 bits (247), Expect(2) = 0.0
Identities = 250/251 (99%)
Strand = Plus / Plus


Query: 98 gttaaagccaacaaccaagtgggttgcgaaatttgtgaaatggtaaccacatttttagaa 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttaaagccaacaaccaagtgggttgcgaaatttgtgaaatggtaaccacatttttagaa 61


Query: 158 gataaattggcaaatagtaatgttgaaactaatattagtgaagaattaatgaaactatgt 217
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62 gataaattggcaaatagtaatgttgaaactaatattagtgaggaattaatgaaactatgt 121


Query: 218 aattacattccatcaaactatcaaaccatatgtaataatttaattgaaaataatattgat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aattacattccatcaaactatcaaaccatatgtaataatttaattgaaaataatattgat 181


Query: 278 tcaattattaaatcctttgaaaataatgaaaccccaacaataatttgcgatcaacttgga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tcaattattaaatcctttgaaaataatgaaaccccaacaataatttgcgatcaacttgga 241


Query: 338 ttatgttcaca 348
|||||||||||
Sbjct: 242 ttatgttcaca 252

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 823,189,971
Number of extensions: 59229846
Number of successful extensions: 5437933
Number of sequences better than 10.0: 582
Length of query: 719
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 695
Effective length of database: 99,340,224,878
Effective search space: 69041456290210
Effective search space used: 69041456290210
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Contig-U04364-1Q.Seq.d
(719 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 95 2e-18
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 95 2e-18
AY815893_1(AY815893|pid:none) Schistosoma japonicum SJCHGC01869 ... 84 4e-15
FN357292_36(FN357292|pid:none) Schistosoma mansoni genome sequen... 83 1e-14
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 82 1e-14
AF196308_1(AF196308|pid:none) Naegleria fowleri naegleriapore A ... 82 2e-14
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ... 81 3e-14
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 81 3e-14
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA... 81 3e-14
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu... 81 3e-14
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 81 3e-14
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 79 1e-13
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet... 78 3e-13
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v... 77 5e-13
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (... 77 5e-13
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1... 77 5e-13
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ... 77 5e-13
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains: Rec... 77 5e-13
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ... 77 5e-13
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act... 77 5e-13
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c... 77 5e-13
AF162129_1(AF162129|pid:none) Drosophila melanogaster ecdysone d... 77 7e-13
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate... 77 7e-13
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 76 9e-13
CR456746_1(CR456746|pid:none) Homo sapiens full open reading fra... 75 2e-12
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ... 74 3e-12
AC116956_84(AC116956|pid:none) Dictyostelium discoideum chromoso... 74 5e-12
AF196309_1(AF196309|pid:none) Naegleria fowleri naegleriapore B ... 72 1e-11
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com... 70 9e-11
(O13035) RecName: Full=Proactivator polypeptide; Contains: Rec... 70 9e-11
(P10960) RecName: Full=Sulfated glycoprotein 1; Short=S... 68 3e-10
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA... 68 3e-10
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl... 67 6e-10
AX704807_1(AX704807|pid:none) Sequence 39 from Patent WO03014151. 67 6e-10
AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo... 67 7e-10
AK167073_1(AK167073|pid:none) Mus musculus blastocyst blastocyst... 66 1e-09
AB170090_1(AB170090|pid:none) Macaca fascicularis brain cDNA clo... 65 3e-09
EU441799_1(EU441799|pid:none) Xenopus borealis clone Psap.a3 pro... 65 3e-09
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ... 65 3e-09
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom... 65 3e-09
DQ363441_1(DQ363441|pid:none) Ictalurus punctatus clone C111BF07... 64 4e-09
AK159634_1(AK159634|pid:none) Mus musculus osteoclast-like cell ... 64 4e-09
AK167719_1(AK167719|pid:none) Mus musculus 15 days pregnant adul... 64 5e-09
(Q61207) RecName: Full=Sulfated glycoprotein 1; Short=S... 64 5e-09
AK159722_1(AK159722|pid:none) Mus musculus osteoclast-like cell ... 64 5e-09
AK153404_1(AK153404|pid:none) Mus musculus bone marrow macrophag... 64 5e-09
AK088369_1(AK088369|pid:none) Mus musculus 2 days neonate thymus... 64 5e-09
AK149785_1(AK149785|pid:none) Mus musculus bone marrow macrophag... 64 5e-09
AK152280_1(AK152280|pid:none) Mus musculus bone marrow macrophag... 64 5e-09
AK167902_1(AK167902|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 64 5e-09
AK159164_1(AK159164|pid:none) Mus musculus osteoclast-like cell ... 64 5e-09
U57999_1(U57999|pid:none) Mus musculus prosaposin (psap\SGP-1) g... 62 2e-08
AB008449_1(AB008449|pid:none) Bombyx mori mRNA for BmP109, compl... 62 2e-08
U40797_4(U40797|pid:none) Caenorhabditis elegans cosmid C28C12, ... 61 3e-08
T15674(T15674)hypothetical protein C28C12.7 - Caenorhabditis ele... 61 3e-08
U40797_3(U40797|pid:none) Caenorhabditis elegans cosmid C28C12, ... 61 3e-08
EF087704_1(EF087704|pid:none) Picea sitchensis clone WS02736_G22... 61 4e-08
S71616_1(S71616|pid:none) prosaposin [mice, mRNA, 2593 nt]. 61 4e-08
DQ071890_1(DQ071890|pid:none) Trichomonas vaginalis saposin-like... 58 3e-07
BT003256_1(BT003256|pid:none) Drosophila melanogaster LD25144 fu... 57 4e-07
AY811214_1(AY811214|pid:none) Schistosoma japonicum clone SJCHGC... 56 1e-06
BC155325_1(BC155325|pid:none) Danio rerio cDNA clone IMAGE:70680... 55 2e-06
CT033825_6(CT033825|pid:none) Zebrafish DNA sequence from clone ... 54 5e-06
AY485648_1(AY485648|pid:none) Trichinella spiralis prosaposin mR... 53 1e-05
S21770(S21770)saposin-C - bovine 53 1e-05
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ... 52 2e-05
CR859906_1(CR859906|pid:none) Pongo abelii mRNA; cDNA DKFZp468M2... 51 4e-05
(P20097) RecName: Full=Saposin-C; AltName: Full=Co-beta-glucosid... 50 7e-05
(Q6NUJ1) RecName: Full=Proactivator polypeptide-like 1; Contains... 50 9e-05
BC119540_1(BC119540|pid:none) Mus musculus prosaposin-like 1, mR... 50 9e-05
BC068579_1(BC068579|pid:none) Homo sapiens prosaposin-like 1, mR... 50 9e-05
(Q8C1C1) RecName: Full=Proactivator polypeptide-like 1; Contains... 50 9e-05
BC149798_1(BC149798|pid:none) Bos taurus prosaposin-like 1, mRNA... 49 2e-04
B89567(B89567)protein T08A9.7 [imported] - Caenorhabditis elegans 48 3e-04
BC091483_1(BC091483|pid:none) Homo sapiens prosaposin, mRNA (cDN... 47 5e-04
EZ000561_1(EZ000561|pid:none) TSA: Culex tarsalis Ctar-515 sapos... 47 5e-04
DQ153190_1(DQ153190|pid:none) Ictalurus punctatus NK-lysin type ... 46 0.001
BX537304_6(BX537304|pid:none) Zebrafish DNA sequence from clone ... 45 0.002
AJ719872_1(AJ719872|pid:none) Gallus gallus mRNA for hypothetica... 45 0.002
CR954203_404(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 45 0.002
DQ153187_1(DQ153187|pid:none) Ictalurus punctatus NK-lysin type ... 45 0.002
BT042292_1(BT042292|pid:none) Zea mays full-length cDNA clone ZM... 44 0.004
AL132968_11(AL132968|pid:none) Arabidopsis thaliana DNA chromoso... 44 0.005
DQ666082_1(DQ666082|pid:none) Artemia franciscana clone 13RP1.05... 44 0.007
AF082528_1(AF082528|pid:none) Entamoeba dispar strain SAW 142 po... 43 0.009
DQ153189_1(DQ153189|pid:none) Ictalurus punctatus NK-lysin type ... 42 0.025
DQ153186_1(DQ153186|pid:none) Ictalurus punctatus NK-lysin type ... 42 0.025
(Q24824) RecName: Full=Pore-forming peptide ameobapore B; AltNam... 40 0.056
U40417_8(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c... 40 0.073
(P22355) RecName: Full=Pulmonary surfactant-associated protein B... 40 0.073
BC072466_1(BC072466|pid:none) Rattus norvegicus surfactant prote... 40 0.073
AY253925_1(AY253925|pid:none) Entamoeba invadens invapore A (IP-... 40 0.095
T11686(T11686)aspartic proteinase (EC 3.4.23.-) - cowpea 39 0.16
AF287258_1(AF287258|pid:none) Vigna unguiculata aspartic protein... 39 0.16
AK317285_1(AK317285|pid:none) Arabidopsis thaliana AT1G62290 mRN... 38 0.28
AJ313384_1(AJ313384|pid:none) Theobroma cacao mRNA for aspartic ... 38 0.28
BT075327_1(BT075327|pid:none) Osmerus mordax clone omor-eva-511-... 38 0.36
(P34095) RecName: Full=Pore-forming peptide ameobapore A; AltNam... 37 0.47
CP001357_368(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 37 0.62
AE014187_109(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.62
AC117075_38(AC117075|pid:none) Dictyostelium discoideum chromoso... 37 0.62
DQ317589_1(DQ317589|pid:none) Homo sapiens truncated surfactant ... 37 0.62
AB090278_1(AB090278|pid:none) Dugesia ryukyuensis Dryg mRNA for ... 37 0.80
FN357320_29(FN357320|pid:none) Schistosoma mansoni genome sequen... 37 0.80
FN357320_30(FN357320|pid:none) Schistosoma mansoni genome sequen... 37 0.80
AF107544_1(AF107544|pid:none) Ovis aries pulmonary surfactant-as... 37 0.80
DQ186291_1(DQ186291|pid:none) Gallus gallus NK-lysin mRNA, compl... 37 0.80
FN314930_1(FN314930|pid:none) Schistosoma japonicum isolate Anhu... 36 1.1
DQ841161_1(DQ841161|pid:none) Xenopus laevis surfactant protein ... 36 1.1
BC170328_1(BC170328|pid:none) Xenopus laevis surfactant protein ... 36 1.1
BC123315_1(BC123315|pid:none) Xenopus laevis hypothetical protei... 36 1.1
FN314928_1(FN314928|pid:none) Schistosoma japonicum isolate Anhu... 36 1.1
FN314931_1(FN314931|pid:none) Schistosoma japonicum isolate Anhu... 36 1.1
T16599(T16599)hypothetical protein K09F5.3 - Caenorhabditis eleg... 36 1.4
U37430_3(U37430|pid:none) Caenorhabditis elegans cosmid K09F5, c... 36 1.4
(Q07831) RecName: Full=Non-pathogenic pore-forming peptide; ... 36 1.4
DQ648018_1(DQ648018|pid:none) Nicotiana tabacum aspartic proteas... 36 1.4
U40417_6(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c... 36 1.4
LNHUB(A31361;A28461;A27794;A27592;JU0162;S21134)pulmonary surfac... 35 1.8
(P07988) RecName: Full=Pulmonary surfactant-associated protein B... 35 1.8
AC000375_21(AC000375|pid:none) Sequence of BAC F19K23 from Arabi... 35 2.3
U51036_1(U51036|pid:none) Arabidopsis thaliana aspartic proteina... 35 2.3
AY245799_1(AY245799|pid:none) Bos taurus clone 62 granulysin/NK-... 35 2.3
AF024493_6(AF024493|pid:none) Caenorhabditis elegans cosmid F23F... 35 3.1
S41400(S41400)aspartic proteinase (EC 3.4.23.-) - wild cabbage (... 35 3.1
T14446(T14446) aspartic proteinase (EC 3.4.23.-) - wild cabbage ... 35 3.1
AM779477_1(AM779477|pid:none) Sus scrofa mRNA for surfactant pro... 35 3.1
CP000591_303(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 34 4.0
AY811208_1(AY811208|pid:none) Schistosoma japonicum clone SJCHGC... 34 4.0
AY811155_1(AY811155|pid:none) Schistosoma japonicum clone SJCHGC... 34 4.0
AY811092_1(AY811092|pid:none) Schistosoma japonicum clone SJCHGC... 34 4.0
(O18823) RecName: Full=Acyloxyacyl hydrolase; EC=3.1.1.... 34 4.0
AY811101_1(AY811101|pid:none) Schistosoma japonicum SJCHGC00199 ... 34 4.0
AF000262_3(AF000262|pid:none) Caenorhabditis elegans cosmid C48E... 34 4.0
AY811061_1(AY811061|pid:none) Schistosoma japonicum clone SJCHGC... 34 4.0
AB045892_1(AB045892|pid:none) Nepenthes alata NaAP2 mRNA for asp... 34 4.0
AY811148_1(AY811148|pid:none) Schistosoma japonicum clone SJCHGC... 34 4.0
GQ121971_1(GQ121971|pid:none) Sonneratia alba clone Sa529_sanya ... 34 5.2
EF585930_1(EF585930|pid:none) Sonneratia ovata isolate Sonn529_3... 34 5.2
AC145372_5(AC145372|pid:none) Medicago truncatula clone mth2-5f4... 34 5.2
(P17129) RecName: Full=Pulmonary surfactant-associated protein B... 34 5.2
AY184216_1(AY184216|pid:none) Danio rerio NK lysin-like protein ... 33 6.8
T27869(T27869)sphingomyelin phosphodiesterase (EC 3.1.4.12), aci... 33 6.8
EF583467_1(EF583467|pid:none) Bubalus bubalis granulysin mRNA, p... 33 6.8
(Q23498) RecName: Full=Sphingomyelin phosphodiesterase 2; ... 33 6.8
AY814614_1(AY814614|pid:none) Schistosoma japonicum SJCHGC02459 ... 33 6.8
X57107_1(X57107|pid:none) Human gene for cerebroside sulfate act... 33 8.9
A27562(A27562) T-cell activation protein, splice form 519 - huma... 33 8.9
CP000246_2733(CP000246|pid:none) Clostridium perfringens ATCC 13... 33 8.9
A00142_1(A00142|pid:none) H.sapiens LAG-2 gene encoding lymphoki... 33 8.9
AM779476_1(AM779476|pid:none) Sus scrofa mRNA for surfactant pro... 33 8.9

>BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protein
MGC64541, mRNA (cDNA clone MGC:64541 IMAGE:6878981),
complete cds.
Length = 512

Score = 95.1 bits (235), Expect = 2e-18
Identities = 51/184 (27%), Positives = 83/184 (45%)
Frame = +2

Query: 110 NQVGCEICEMVTTFLEDKLANSNVETNISEELMKLCNYIPSNYQTICNNLIENNIDSIIK 289
N V CE+CE++ + +E L N+ NI + L K+C +PS Y C ++I+ D +I+
Sbjct: 299 NNVYCEVCELMISQIEKLLDNNRTRENIKQSLEKVCKLLPSQYTQKCEDIIDEYCDPLIE 358

Query: 290 SFENNETPTIICDQLGLCXXXXXXXXNFDTIQETXXXXXXXXXXDLPSVGCLICEFIVQK 469
E P +IC LG C N ++ + C +C I++
Sbjct: 359 LLEQEANPEVICTTLGYC----SGRKNLKNVKISAEKVAAGDY-------CPVCRMIMRY 407

Query: 470 VESYIEVNATQSEIEYFLDQDCNKFGGGYAGECVVYVNQYVPQLVNYLSYNQKPEKACSE 649
V+ +E NAT+S I+ FL++ CN EC + +Y P + L P C +
Sbjct: 408 VDELLEKNATESRIKDFLNRICNFLPDSMQNECSALIKEYEPLFIQLLLEALDPSFICLK 467

Query: 650 IKAC 661
+ C
Sbjct: 468 LHLC 471

Score = 42.7 bits (99), Expect = 0.011
Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 28/208 (13%)
Frame = +2

Query: 122 CEICEMVTTFLEDKLANSNVETNISEELMKLCNYIPS-NYQTICNNLIENNIDSIIKSFE 298
C++C+ + T L + + ++ + I + L K+C+ P C + + ++ +
Sbjct: 63 CDVCKEIITVLGNFMKDNITQGEIKDYLNKVCDLFPDPGLAATCKQEVSDYFSIVLNLLQ 122

Query: 299 NN-ETPTIICDQLGLCXXXXXXXXNFDTIQETXXXXXXXXXXDL---------------- 427
P ++C LGLC + ++
Sbjct: 123 QELSNPGVLCSSLGLCTSLQRHLASLKQPKQLLNNEIPDVDASKLVYPFIVNVPQLLYPQ 182

Query: 428 ------PSVG--CLICEFIVQKVESYIEVNATQSE--IEYFLDQDCNKFGGGYAGECVVY 577
P G C C ++ V+ + N++ S+ +++F+ Q+CN A C Y
Sbjct: 183 DKTPKEPKTGDICNDCTTLISDVQDALRSNSSFSKKLVDHFM-QECNLLDPTMAEMCKSY 241

Query: 578 VNQYVPQLVNYLSYNQKPEKACSEIKAC 661
+NQY + L +P++ C C
Sbjct: 242 INQYADIAIQVL-LQMQPKQLCGMAGFC 268

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 926,958,841
Number of extensions: 15717821
Number of successful extensions: 39080
Number of sequences better than 10.0: 151
Number of HSP's gapped: 38904
Number of HSP's successfully gapped: 385
Length of query: 239
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 114
Effective length of database: 652,629,681
Effective search space: 74399783634
Effective search space used: 74399783634
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.89 gvh: 0.62 alm: 0.24 top: 0.27 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.83 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for Contig-U04364-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0