| Contig-U00920-1 |
| Contig ID |
Contig-U00920-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1288 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
1563298 |
| End point |
1562009 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
5 |
| Number of EST |
7 |
| Link to clone list |
U00920 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.21 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 4.19 |
| Homology vs DNA |
Query= Contig-U00920-1 (Contig-U00920-1Q) /CSM_Contig/Contig-U00920-1Q.Seq.d
(1298 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ402234) Dictyostelium discoideum cDNA clone:dds20m20, 3' ... 1344 0.0 1
(BJ399616) Dictyostelium discoideum cDNA clone:dds6p17, 3' e... 1277 0.0 2
(BJ388680) Dictyostelium discoideum cDNA clone:dds6p17, 5' e... 1170 0.0 1
(BJ390025) Dictyostelium discoideum cDNA clone:dds20m20, 5' ... 1092 0.0 1
(BJ400092) Dictyostelium discoideum cDNA clone:dds8d20, 3' e... 779 0.0 2
(BJ372318) Dictyostelium discoideum cDNA clone:ddc12i02, 3' ... 720 0.0 2
(BJ398838) Dictyostelium discoideum cDNA clone:dds2h14, 3' e... 825 0.0 2
(L24114) Dictyostelium discoedeum hydroxymethylglutaryl-CoA ... 870 0.0 3
(DY885154) CeleSEQ349 Cunninghamella elegans pBluescript (Ec... 78 7e-20 3
(DY888244) CeleSEQ5035 Cunninghamella elegans pBluescript (E... 78 1e-19 3
(DY890543) CeleSEQ9582 Cunninghamella elegans pBluescript (E... 78 1e-19 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 84 1e-17 11
(DL173563) Methods for Identifying the Target of a Compound ... 42 4e-15 5
(AX489123) Sequence 6423 from Patent WO02053728. 42 4e-15 5
(AR548134) Sequence 3265 from patent US 6747137. 42 6e-12 4
(AL439034) T3 end of clone BD0AA002A07 of library BD0AA from... 42 4e-11 6
(AL428664) clone BA0AB027B02 of library BA0AB from strain CL... 42 3e-10 4
(EY260352) BF01015A1H04.f1 Normalized subtracted keck librar... 44 5e-08 3
(FF522385) G710P5261RA1.T0 Acorn worm normalized juvenile pE... 72 6e-08 1
(FF519498) G710P5221RG9.T0 Acorn worm normalized juvenile pE... 72 6e-08 1
(EA377095) Sequence 25918 from patent US 7314974. 54 7e-07 2
(DB645634) Saccharomyces cerevisiae mRNA, clone: S03052-40_E... 44 8e-07 3
(FL974523) CCHY12293.b1 CCHY Panicum virgatum callus (N) Pan... 68 9e-07 1
(CQ434799) Sequence 559 from Patent WO0192523. 44 1e-06 3
(ES574622) FPS0114.CR_P15 LSG10-01 Lymnaea stagnalis cDNA cl... 44 1e-06 3
(U32187) Schizosaccharomyces pombe 3-hydroxy-3-methylglutary... 54 2e-06 2
(ES577272) FPS015.CR_B17 LSG10-01 Lymnaea stagnalis cDNA clo... 44 2e-06 3
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 66 4e-06 1
(AK071039) Oryza sativa Japonica Group cDNA clone:J023079L19... 66 4e-06 1
(AC210486) Oryza glaberrima clone OG_BBa0079C16, complete se... 66 4e-06 1
(AC118980) Oryza sativa Japonica Group chromosome 3 clone OJ... 66 4e-06 1
(EA696953) Sequence 75832 from patent US 7365185. 66 4e-06 1
(CL825994) OR_CBa0046I05.r OR_CBa Oryza rufipogon genomic cl... 66 4e-06 1
(CL748857) OR_BBa0114G19.r OR_BBa Oryza nivara genomic clone... 66 4e-06 1
(CL730947) OR_BBa0062O15.f OR_BBa Oryza nivara genomic clone... 66 4e-06 1
(CB654794) OSJNEc07J09.f OSJNEc Oryza sativa Japonica Group ... 66 4e-06 1
(CA998173) S345A_H11 Rice cold stress germination cDNA libra... 66 4e-06 1
(CA766507) AF53-Rpf_11_L18_T7_077.ab1 IRRI Drought Stress Pa... 66 4e-06 1
(EA096101) Sequence 2 from patent US 7192751. 44 5e-06 3
(EA376701) Sequence 25524 from patent US 7314974. 44 5e-06 3
(EA065107) Sequence 2 from patent US 7172886. 44 5e-06 3
(DL340768) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 44 5e-06 3
(DJ207217) Method for identification of useful proteins deri... 44 5e-06 3
(DJ045308) METHODS FOR IDENTIFYING A BIOSYNTHETIC PATHWAY GE... 44 5e-06 3
(BD285469) A METHOD OF PRODUCING PRENYLALCOHOL. 44 5e-06 3
(BD171097) Process for producing prenyl alcohol. 44 5e-06 3
(BD170978) Process for producing prenyl alcohol. 44 5e-06 3
(AX830708) Sequence 1428 from Patent WO03072602. 44 5e-06 3
(AX819678) Sequence 1428 from Patent EP1338608. 44 5e-06 3
(AX596528) Sequence 2182 from Patent EP1258494. 44 5e-06 3
(DT667485) He_wd2b1_10G04_M13R Heliconius erato wing disk 2 ... 46 8e-06 4
(X96617) S.cerevisiae HMGS gene. 44 1e-05 3
(DT715840) s13dFA55F02SD027_521268 Tall fescue, Festuca arun... 58 2e-05 2
(EA096107) Sequence 8 from patent US 7192751. 44 4e-05 3
(EA065113) Sequence 8 from patent US 7172886. 44 4e-05 3
(DJ045314) METHODS FOR IDENTIFYING A BIOSYNTHETIC PATHWAY GE... 44 4e-05 3
(FB719939) Sequence 48 from Patent WO2007139924. 44 5e-05 3
(GC500104) Sequence 4 from patent US 7399323. 44 5e-05 3
(DL267760) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 42 6e-05 2
(DJ134209) Method for identification of useful proteins deri... 42 6e-05 2
(FB719940) Sequence 49 from Patent WO2007139924. 44 6e-05 3
(FD696997) CBHY692.fwd CBHY Mycosphaerella fijiensis MfEST5 ... 40 7e-05 3
(EA076562) Sequence 12 from patent US 7183089. 44 8e-05 3
(EA076557) Sequence 7 from patent US 7183089. 44 8e-05 3
(DL079345) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 8e-05 3
(DL079340) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 8e-05 3
(EA076560) Sequence 10 from patent US 7183089. 44 1e-04 3
(DL079343) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 1e-04 3
(EA076553) Sequence 3 from patent US 7183089. 44 1e-04 3
(DL079336) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 1e-04 3
(EA076551) Sequence 1 from patent US 7183089. 44 1e-04 3
(DL079334) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 1e-04 3
(EA096106) Sequence 7 from patent US 7192751. 44 1e-04 3
(EA065112) Sequence 7 from patent US 7172886. 44 1e-04 3
(DJ045313) METHODS FOR IDENTIFYING A BIOSYNTHETIC PATHWAY GE... 44 1e-04 3
(EA076561) Sequence 11 from patent US 7183089. 44 1e-04 3
(EA076552) Sequence 2 from patent US 7183089. 44 1e-04 3
(DL079344) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 1e-04 3
(DL079335) METHOD FOR ENHANCING PRODUCTION OF ISOPRENOID COM... 44 1e-04 3
(AB293445) Saccharomyces cerevisiae gene for aquaporin Aqy1,... 44 2e-04 4
(FL869906) CCGI11702.b1 CCGI Panicum virgatum etiolated seed... 60 2e-04 1
(FL707696) CCGA11312.b1 CCGA Panicum virgatum apex + stem (H... 60 2e-04 1
(FL705507) CCGA9393.b1 CCGA Panicum virgatum apex + stem (H)... 60 2e-04 1
(FE231606) CAPG1308.fwd CAPG Naegleria gruberi amoeba stage ... 58 2e-04 2
(DT651528) ZM_BFb0115K23.r ZM_BFb Zea mays cDNA 5', mRNA seq... 58 3e-04 2
(FE230858) CAPG10018.fwd CAPG Naegleria gruberi amoeba stage... 58 3e-04 2
(DR966442) ZM_BFb0086M17.r ZM_BFb Zea mays cDNA 5', mRNA seq... 58 3e-04 2
(FE233165) CAPG2138.fwd CAPG Naegleria gruberi amoeba stage ... 58 3e-04 2
(FE238498) CAPG4887.fwd CAPG Naegleria gruberi amoeba stage ... 58 3e-04 2
(DN226432) MEST1188_G07.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR... 58 3e-04 2
(FE242502) CAPG7197.fwd CAPG Naegleria gruberi amoeba stage ... 58 3e-04 2
(Z50178) S.cerevisiae chromosome XIII left telomere and lamb... 44 3e-04 4
(FE242766) CAPG7323.fwd CAPG Naegleria gruberi amoeba stage ... 58 4e-04 2
(FE244343) CAPG8145.fwd CAPG Naegleria gruberi amoeba stage ... 58 4e-04 2
(FE242919) CAPG7396.fwd CAPG Naegleria gruberi amoeba stage ... 58 4e-04 2
(FE234017) CAPG2594.fwd CAPG Naegleria gruberi amoeba stage ... 58 4e-04 2
(CG120179) PUKCI11TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 58 4e-04 2
(DJ025881) Genome-wide DNA marker of Saccharomyces cerevisiae. 44 6e-04 2
(AC233794) Oryza minuta clone OM__Ba0207E07, complete sequence. 58 9e-04 1
(AC232890) Oryza officinalis clone OO__Ba0071K09, complete s... 58 9e-04 1
(AC155466) Zea mays strain B73 clone ZMMBBb0521N19, *** SEQU... 58 9e-04 1
(AC155458) Zea mays strain B73 clone ZMMBBb0459N17, *** SEQU... 58 9e-04 1
(AC194117) Zea mays chromosome 1 clone CH201-245A3; ZMMBBc02... 58 9e-04 1
(CG120176) PUKCI11TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 58 9e-04 1
(BZ802694) PUFDK90TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 58 9e-04 1
(DB861540) Lipochromis sp. 'matumbi hunter' cDNA clone:hm746... 46 0.004 2
(DB869320) Lipochromis sp. 'matumbi hunter' cDNA clone:hm734... 46 0.004 2
(DB873512) Lipochromis sp. 'matumbi hunter' cDNA clone:hm784... 46 0.004 2
(FE674445) Pv059Ar_M13F_B02.ab1 Phaseolus vulgaris cv Early ... 34 0.005 3
(AZ930180) 474.dhz50f07.s1 Saccharomyces unisporus NRRL Y-15... 38 0.006 3
(BI505742) BB170031B10F03.5 Bee Brain Normalized/Subtracted ... 36 0.007 4
(EA084870) Sequence 7130 from patent US 7186513. 42 0.010 3
(AR677629) Sequence 7130 from patent US 6902887. 42 0.010 3
(CV967253) PC019F12 infected tomato, center of lesion 3 dpi ... 42 0.012 2
(BI930457) EST550346 tomato flower, 8 mm to preanthesis buds... 42 0.012 2
(DN171570) LH__Ea09C09.r LH__Ea Solanum habrochaites cDNA cl... 42 0.012 2
(BI926122) EST546011 tomato flower, buds 0-3 mm Solanum lyco... 42 0.012 2
(DB685556) Solanum lycopersicum cDNA, clone: LEFL1023CA05, 5... 42 0.012 2
(DB682948) Solanum lycopersicum cDNA, clone: LEFL1015AE11, 5... 42 0.012 2
(DB701125) Solanum lycopersicum cDNA, clone: LEFL1072DB09, 5... 42 0.012 2
(BE449411) EST356170 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(BI929129) EST549018 tomato flower, 3 - 8 mm buds Solanum ly... 42 0.012 2
(AW738266) EST339693 tomato flower buds, anthesis, Cornell U... 42 0.012 2
(AW616551) EST322962 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(DB722304) Solanum lycopersicum cDNA, clone: LEFL2040F19, 5'... 42 0.012 2
(AW737799) EST339226 tomato flower buds, anthesis, Cornell U... 42 0.012 2
(DB693762) Solanum lycopersicum cDNA, clone: LEFL1049BE04, 5... 42 0.012 2
(AW623702) EST321647 tomato flower buds 3-8 mm, Cornell Univ... 42 0.012 2
(AW623235) EST321180 tomato flower buds 3-8 mm, Cornell Univ... 42 0.012 2
(BG642471) EST355947 tomato flower buds, anthesis, Cornell U... 42 0.012 2
(DB694808) Solanum lycopersicum cDNA, clone: LEFL1052CD06, 5... 42 0.012 2
(BE449850) EST361288 tomato root, plants pre-anthesis, Corne... 42 0.012 2
(BE353281) EST400413 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(DB691604) Solanum lycopersicum cDNA, clone: LEFL1042DH11, 5... 42 0.012 2
(AW617130) EST323541 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(AW623070) EST321015 tomato flower buds 3-8 mm, Cornell Univ... 42 0.012 2
(DB693698) Solanum lycopersicum cDNA, clone: LEFL1049AF11, 5... 42 0.012 2
(BI926251) EST546140 tomato flower, buds 0-3 mm Solanum lyco... 42 0.012 2
(AW929571) EST338359 tomato flower buds 8 mm to pre-anthesis... 42 0.012 2
(AW934700) EST353592 tomato flower buds 0-3 mm, Cornell Univ... 42 0.012 2
(AI483391) EST248985 tomato shoot, Cornell Solanum lycopersi... 42 0.012 2
(BE449184) EST356039 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(AW617037) EST323448 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(BE353383) EST353664 tomato flower buds 0-3 mm, Cornell Univ... 42 0.012 2
(DB704792) Solanum lycopersicum cDNA, clone: LEFL1086CD04, 5... 42 0.012 2
(AW617340) EST323751 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(BE449415) EST356174 L. hirsutum trichome, Cornell Universit... 42 0.012 2
(AW032860) EST276419 tomato callus, TAMU Solanum lycopersicu... 42 0.012 2
(CU329670) Schizosaccharomyces pombe chromosome I. 54 0.014 1
(CZ723887) OC__Ba0050D14.f OC__Ba Oryza coarctata genomic cl... 54 0.014 1
(CZ717186) OC__Ba0041E21.r OC__Ba Oryza coarctata genomic cl... 54 0.014 1
(AG022727) Oryza sativa Japonica Group DNA, clone:NC2555_0_5... 54 0.014 1
(FL806809) CCGG6333.b1 CCGG Panicum virgatum late flowering ... 54 0.014 1
(FD505572) Pam01b_62_F03_C013.g1 Persea americana flower bud... 54 0.014 1
(FD503726) Pam01b_33_D07_C013.g1 Persea americana flower bud... 54 0.014 1
(EY424393) ZY006303 Aspergillus oryzae EST Library Aspergill... 42 0.015 3
(BE365312) PI1_26_H02.b1_A002 Pathogen induced 1 (PI1) Sorgh... 50 0.025 2
(FE419946) CBTW4210.fwd CBTW_Daphnia_pulex_Chosen_One_Librar... 38 0.030 3
(EE003994) ROE00012857 Rhizopus oryzae Company Rhizopus oryz... 42 0.045 2
(BM326441) PIC1_57_A11.b1_A002 Pathogen-infected compatible ... 50 0.051 2
(BE594333) PI1_32_A12.b2_A002 Pathogen induced 1 (PI1) Sorgh... 50 0.052 2
(FK997750) 13081025 CERES-CL13 Zea mays cDNA clone 1374410 5... 50 0.053 2
(GH377188) G897P55RL7.T0 C. immitis RS, 120HR Spherul_NORMAL... 42 0.062 2
(GH377187) G897P55FL7.T0 C. immitis RS, 120HR Spherul_NORMAL... 42 0.062 2
(GH392275) G897P533RM18.T0 C. immitis RS, 120HR Spherul_NORM... 42 0.065 2
(GH387277) G897P513RH17.T0 C. immitis RS, 120HR Spherul_NORM... 42 0.066 2
(GH356961) G896P56FN5.T0 C. immitis RS, 72HR Spherule_NORMAL... 42 0.066 2
(GH374483) G896P549FI11.T0 C. immitis RS, 72HR Spherule_NORM... 42 0.067 2
(GH374484) G896P549RI11.T0 C. immitis RS, 72HR Spherule_NORM... 42 0.067 2
(GH356962) G896P56RN5.T0 C. immitis RS, 72HR Spherule_NORMAL... 42 0.067 2
(GH382225) G897P59RB21.T0 C. immitis RS, 120HR Spherul_NORMA... 42 0.069 2
(CF823742) EST701124 Coccidioides posadasii saprobic phase c... 42 0.069 2
(GH391792) G897P533RB11.T0 C. immitis RS, 120HR Spherul_NORM... 42 0.069 2
(GH386051) G897P512RL14.T0 C. immitis RS, 120HR Spherul_NORM... 42 0.071 2
(GH423422) G873P522RJ20.T0 C. posadasii Silveira, 24HR SPHER... 42 0.072 2
(GH423050) G873P521RP23.T0 C. posadasii Silveira, 24HR SPHER... 42 0.073 2
(GH423308) G873P522RG20.T0 C. posadasii Silveira, 24HR SPHER... 42 0.075 2
(CF825610) EST702992 Coccidioides posadasii saprobic phase c... 42 0.078 2
(CO012851) EST801186 Coccidioides posadasii spherule cDNA li... 42 0.081 2
(CF825688) EST703070 Coccidioides posadasii saprobic phase c... 42 0.082 2
(EA190725) Sequence 55040 from patent US 7214786. 50 0.22 1
(CZ833256) OC__Ba0215L22.r OC__Ba Oryza coarctata genomic cl... 50 0.22 1
(CZ790966) OC__Ba0158B14.r OC__Ba Oryza coarctata genomic cl... 50 0.22 1
(CZ711385) OC__Ba0033A21.f OC__Ba Oryza coarctata genomic cl... 50 0.22 1
(CZ163676) OR_ABa0005N05.f OR_ABa Oryza ridleyi genomic clon... 50 0.22 1
(EG388396) BG01026B1A01.f1 BG01 - normalized library Leymus ... 50 0.22 1
(EG383019) BG01017A2G12.f1 BG01 - normalized library Leymus ... 50 0.22 1
(DN316090) PL06022B2B10 cDNA from juvenile hermaphodites Sch... 50 0.22 1
(CK753436) pam01-10ms2-e11 Pam01 Persea americana cDNA clone... 50 0.22 1
(BQ703891) 946107B12.y1 946 - tassel primordium prepared by ... 50 0.22 1
(FC763880) CBBN14220.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 50 0.22 1
(FC737498) CBBH2369.fwd CBBH Lottia gigantea 26h,37h,61h Lar... 50 0.22 1
(FC722911) CBBG14975.fwd CBBG Lottia gigantea 12,15,18h embr... 50 0.22 1
(FC691302) CAXX2498.fwd CAXX Lottia gigantea from male gonad... 50 0.22 1
(FC688791) CAXX20279.fwd CAXX Lottia gigantea from male gona... 50 0.22 1
(FC594742) CAXP8759.fwd CAXP Lottia gigantea from head, foot... 50 0.22 1
(CR382124) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 38 0.42 2
(CI736272) Oryza sativa Japonica Group cDNA, clone: J09B0004... 42 0.47 2
(CP000867) Methanococcus maripaludis C6, complete genome. 38 0.50 16
(EB804666) 3477_B05 Botrytis cinerea expressed sequence tags... 34 0.56 3
(DN551769) pSPR-RT-A-H1_H12_C249 pSPR Sorghum propinquum cDN... 38 0.61 2
(FG986063) GLLBP73TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 34 0.61 2
(BQ118160) EST603736 mixed potato tissues Solanum tuberosum ... 36 0.62 2
(CV302511) 74500.1 Swollen Stolon Solanum tuberosum cDNA clo... 36 0.62 2
(DN168490) LH__Ea03H02.r LH__Ea Solanum habrochaites cDNA cl... 36 0.62 2
(FG986371) GLLBT73TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 34 0.62 2
(BI919284) EST539219 P. infestans-challenged potato leaf, co... 36 0.62 2
(BG598728) EST503628 cSTS Solanum tuberosum cDNA clone cSTS2... 36 0.62 2
(BE343860) EST409022 potato stolon, Cornell University Solan... 36 0.62 2
(CA118672) SCBGLR1112C10.g LR1 Saccharum officinarum cDNA cl... 38 0.62 2
(BE472936) EST417802 potato stolon, Cornell University Solan... 36 0.62 2
(BE920934) EST424703 potato leaves and petioles Solanum tube... 36 0.62 2
(BM731163) sal68d11.y1 Gm-c1061 Glycine max cDNA clone SOYBE... 34 0.62 2
(BG594270) EST492948 cSTS Solanum tuberosum cDNA clone cSTS7... 36 0.62 2
(BG593719) EST492397 cSTS Solanum tuberosum cDNA clone cSTS5... 36 0.62 2
(BG098159) EST462678 sprouting eyes/shoots Solanum tuberosum... 36 0.62 2
(BE922786) EST426555 potato leaves and petioles Solanum tube... 36 0.63 2
(BG597821) EST496499 cSTS Solanum tuberosum cDNA clone cSTS1... 36 0.63 2
(BF053565) EST438795 potato leaves and petioles Solanum tube... 36 0.63 2
(BE921544) EST425313 potato leaves and petioles Solanum tube... 36 0.63 2
(AW040968) EST283832 tomato mixed elicitor, BTI Solanum lyco... 36 0.63 2
(AW905973) EST342146 potato stolon, Cornell University Solan... 36 0.63 2
(BG096651) EST461170 potato leaves and petioles Solanum tube... 36 0.63 2
(BQ116958) EST602534 mixed potato tissues Solanum tuberosum ... 36 0.63 2
(BE472283) EST417136 potato stolon, Cornell University Solan... 36 0.63 2
(BE924094) EST427863 potato leaves and petioles Solanum tube... 36 0.64 2
(FG952320) MA_PA64s_00131 Mature embryo cDNA Library of PA64... 42 0.68 2
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 42 0.74 20
(CF322861) HDN--02-E11.g1 OsHDAC1-overexpressing transgenic ... 42 0.74 2
(CN487837) M10D09 Tuber borchii mature fruit body library Tu... 42 0.79 2
(CK070560) 73755rsicem_7437.y1 Oryza sativa cv. PA64s panicl... 42 0.81 2
(CN068292) M08_Ag2_p13_M1_M13R AG Ambystoma tigrinum tigrinu... 48 0.86 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 48 0.86 1
(EY111960) CAZI7601.fwd CAZI Artemisia annua normalized leaf... 44 0.95 2
(EY111775) CAZI7504.fwd CAZI Artemisia annua normalized leaf... 44 0.97 2
(EY097974) CAZI23504.fwd CAZI Artemisia annua normalized lea... 44 0.97 2
(FE855796) CAFU1058.fwd CAFU Pichia stipitis oxygen limited ... 38 0.97 2
(CA765063) AF53-Rpf_05_P24_T7_096.ab1 IRRI Drought Stress Pa... 42 0.98 2
(FE846392) CAFI710.fwd CAFI Pichia stipitis aerobic dextrose... 38 1.00 2
(FE860511) CAFY671.fwd CAFY Pichia stipitis oxygen limited x... 38 1.0 2
(CN595487) TTE00011169 Normalized large Tetrahymena thermoph... 38 1.0 2
(FE853258) CAFP2670.fwd CAFP Pichia stipitis aerobic xylose ... 38 1.0 2
(FE846118) CAFI560.fwd CAFI Pichia stipitis aerobic dextrose... 38 1.0 2
(EY097831) CAZI23434.fwd CAZI Artemisia annua normalized lea... 44 1.0 2
(EC823299) SME00008622 esmbsro2 Sawyeria marylandensis cDNA,... 36 1.5 3
(AK102923) Oryza sativa Japonica Group cDNA clone:J033114C16... 42 2.2 2
(EJ367109) 1092963709703 Global-Ocean-Sampling_GS-28-01-01-1... 38 2.2 3
(AC154468) Mus musculus BAC clone RP24-157D1 from chromosome... 34 2.7 5
(EC755909) PPE00001947 Agencourt Biosciences Agen-0020 Non-n... 44 2.8 2
(EC756340) PPE00002593 Agencourt Biosciences Agen-0020 Non-n... 44 2.8 2
(EL566224) Physarum10552 Physarum polycephalum starvation st... 44 3.0 2
(CK079399) 85160rsicen_27127.y1 Oryza sativa cv. LYP9 bootin... 40 3.0 2
(DN146326) 4844_A07_A13 Switchgrass stem cDNA library Panicu... 40 3.0 2
(CK060183) 61847rsicek_5667.y1 Oryza sativa cv. PA64s panicl... 40 3.0 2
(CK060261) 62100rsicek_6196.y1 Oryza sativa cv. PA64s panicl... 40 3.1 2
(CK077180) 81618rsicen_8653.y1 Oryza sativa cv. LYP9 booting... 40 3.1 2
(EC758879) PPE00005398 Agencourt Biosciences Agen-0020 Non-n... 44 3.1 2
(AK235559) Sus scrofa mRNA, clone:OVRM10093C11, expressed in... 40 3.3 2
(FL916982) CCGO10705.b1 CCGO Panicum virgatum root (H) Panic... 40 3.3 2
(FE638577) CBYZ1715.b1 CBYZ Panicum virgatum Kanlow 4 day ol... 40 3.3 2
(CU570764) M.truncatula DNA sequence from clone MTH2-172I10 ... 46 3.4 1
(AC226076) Oryza minuta clone OM__Ba0095D24, complete sequence. 46 3.4 1
(AC216037) Oryza punctata clone OP__Ba0068H10, complete sequ... 46 3.4 1
(AC148405) Medicago truncatula clone mth2-37m7, complete seq... 46 3.4 1
(CL577840) OB__Ba0032K17.r OB__Ba Oryza brachyantha genomic ... 46 3.4 1
(CL562436) OB__Ba0022N23.f OB__Ba Oryza brachyantha genomic ... 46 3.4 1
(BG583982) EST485742 MHAM Medicago truncatula/Glomus versifo... 46 3.4 1
(ES735444) Nad03b_77_C10_C005.g1 Nuphar advena flower bud li... 46 3.4 1
(ES732322) Nad03b_39_A10_C005.g1 Nuphar advena flower bud li... 46 3.4 1
(DY964518) CLSM15069.b1_I23.ab1 CLS(LMS) lettuce sativa Lact... 42 3.5 2
(FL764433) CCGC12534.b1 CCGC Panicum virgatum early floral b... 40 3.5 2
(FL811579) CCGG12427.b1 CCGG Panicum virgatum late flowering... 40 3.5 2
(EL577185) Physarum10549 Physarum polycephalum starvation st... 44 3.7 2
(DY973002) CLSM6714.b1_D23.ab1 CLS(LMS) lettuce sativa Lactu... 42 3.8 2
(DY966689) CLSM17841.b1_B21.ab1 CLS(LMS) lettuce sativa Lact... 42 3.8 2
(FC897847) IC0AAA86BF11RM1 IVIA1 Citrus clementina cDNA clon... 38 3.9 2
(DY891095) CeleSEQ7633 Cunninghamella elegans pBluescript (E... 38 4.0 2
(DY966552) CLSM17714.b1_C13.ab1 CLS(LMS) lettuce sativa Lact... 42 4.0 2
(DY859958) ApulSEQ12679 Aureobasidium pullulans pBluescript ... 32 4.8 3
(DY294758) IC0AAA86BF11RM1 CitNFL Citrus clementina cDNA 5',... 38 5.7 2
(DY865620) ApulSEQ003723 Aureobasidium pullulans pBluescript... 32 6.0 3
(AC189658) Brassica rapa subsp. pekinensis clone KBrS016L08,... 34 7.0 5
(DY857406) ApulSEQ8674 Aureobasidium pullulans pBluescript (... 32 7.0 3
(DY855483) ApulSEQ5791 Aureobasidium pullulans pBluescript (... 32 7.8 3
(AC172568) Bos taurus clone CH240-267N13, WORKING DRAFT SEQU... 40 7.9 6
(DY859733) ApulSEQ12346 Aureobasidium pullulans pBluescript ... 32 7.9 3
(EJ051844) 1095456003006 Global-Ocean-Sampling_GS-26-01-01-1... 32 8.4 2
(EJ004643) 1091138183946 Global-Ocean-Sampling_GS-26-01-01-1... 32 8.4 2
(EE004446) ROE00003861 Rhizopus oryzae Company Rhizopus oryz... 34 8.6 2
(DY863176) ApulSEQ17721 Aureobasidium pullulans pBluescript ... 32 8.7 3
(AC008773) Homo sapiens chromosome 5 clone CTD-2017I19, WORK... 44 9.2 3
(CK756641) atr02-8ms3-e05 Atr02 Amborella trichopoda cDNA cl... 32 9.3 3
(DU050554) 145187 Tomato HindIII BAC Library Solanum lycoper... 34 9.5 3
>(BJ402234) Dictyostelium discoideum cDNA clone:dds20m20, 3' end,
single read.
Length = 699
Score = 1344 bits (678), Expect = 0.0
Identities = 678/678 (100%)
Strand = Plus / Minus
Query: 601 ttggttcaaaaatcatttggtagaatgttatataatgactttttaaataatccaaatgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttggttcaaaaatcatttggtagaatgttatataatgactttttaaataatccaaatgat 640
Query: 661 tcaagatatgcatcattggaagcttataagaatgttaaaccagaagatacttatttcgat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcaagatatgcatcattggaagcttataagaatgttaaaccagaagatacttatttcgat 580
Query: 721 agtgtacttgaaaaagcattgtcagcaatcaccaagaatgattatgctaccaagggttgc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agtgtacttgaaaaagcattgtcagcaatcaccaagaatgattatgctaccaagggttgc 520
Query: 781 accaaccactttattagccaaacaattgggtaatacttattgtggttcaacctattctgg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 accaaccactttattagccaaacaattgggtaatacttattgtggttcaacctattctgg 460
Query: 841 acttttatcattacttgatgaaaaatcaaatgatttagttggtaagagagtattaacctt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acttttatcattacttgatgaaaaatcaaatgatttagttggtaagagagtattaacctt 400
Query: 901 ttcatatggttctggtttggctgcatctgcattctcattcaaagttgaaaaaccaattaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcatatggttctggtttggctgcatctgcattctcattcaaagttgaaaaaccaattaa 340
Query: 961 tcatatcgttgaaaaagttgatttaaagaatcgtttagctaaaagagttcgtgttgaacc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcatatcgttgaaaaagttgatttaaagaatcgtttagctaaaagagttcgtgttgaacc 280
Query: 1021 agagattttcacagagaaattatcacttcgtgaaactagacataatcttaaaaattatgt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agagattttcacagagaaattatcacttcgtgaaactagacataatcttaaaaattatgt 220
Query: 1081 accatctgatgaaactacaaatatgttcccaggttctttctatttatcttctgtcgataa 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 accatctgatgaaactacaaatatgttcccaggttctttctatttatcttctgtcgataa 160
Query: 1141 tgctggtattagaaaatatgatcgtacttattcaacctctgctgtacttggtgcatttca 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tgctggtattagaaaatatgatcgtacttattcaacctctgctgtacttggtgcatttca 100
Query: 1201 aagaagacaacaaatctctcaatcaacaatcaaatctttaaatttatttagagctactaa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aagaagacaacaaatctctcaatcaacaatcaaatctttaaatttatttagagctactaa 40
Query: 1261 atcagttttatcaatttt 1278
||||||||||||||||||
Sbjct: 39 atcagttttatcaatttt 22
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,530,664,321
Number of extensions: 88523461
Number of successful extensions: 6825799
Number of sequences better than 10.0: 293
Length of query: 1298
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1274
Effective length of database: 99,340,224,878
Effective search space: 126559446494572
Effective search space used: 126559446494572
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.14 |
| Homology vs Protein |
Query= Contig-U00920-1 (Contig-U00920-1Q) /CSM_Contig/Contig-U00920-1Q.Seq.d
(1298 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(P54872) RecName: Full=Hydroxymethylglutaryl-CoA synthase A; ... 394 e-108
AM270128_62(AM270128|pid:none) Aspergillus niger contig An07c010... 243 2e-84
L24114_1(L24114|pid:none) Dictyostelium discoedeum hydroxymethyl... 288 2e-76
CU633895_268(CU633895|pid:none) Podospora anserina genomic DNA c... 284 4e-75
AM920433_145(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 284 4e-75
AL356172_19(AL356172|pid:none) Neurospora crassa DNA linkage gro... 281 5e-74
CU928169_690(CU928169|pid:none) Kluyveromyces thermotolerans str... 280 8e-74
AM270014_3(AM270014|pid:none) Aspergillus niger contig An02c0190... 279 1e-73
AP007155_533(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 278 4e-73
CR382133_125(CR382133|pid:none) Debaryomyces hansenii strain CBS... 271 5e-71
FN392320_199(FN392320|pid:none) Pichia pastoris GS115 chromosome... 271 5e-71
AB274989_1(AB274989|pid:none) Bombyx mori HMG-S_Bm mRNA for 3-hy... 270 6e-71
BC159179_1(BC159179|pid:none) Xenopus tropicalis 3-hydroxy-3-met... 270 8e-71
(P54839) RecName: Full=Hydroxymethylglutaryl-CoA synthase; ... 269 2e-70
AY902193_1(AY902193|pid:none) Ips pini 3-hydroxy-3-methylglutary... 269 2e-70
AE016817_44(AE016817|pid:none) Ashbya gossypii (= Eremothecium g... 267 7e-70
CP000497_488(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 266 9e-70
S13887(S13887)hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5) - ... 266 9e-70
AB168874_1(AB168874|pid:none) Macaca fascicularis testis cDNA, c... 266 2e-69
BC000297_1(BC000297|pid:none) Homo sapiens 3-hydroxy-3-methylglu... 266 2e-69
S27197(S27197;S21590) hydroxymethylglutaryl-CoA synthase (EC 4.1... 266 2e-69
(Q01581) RecName: Full=Hydroxymethylglutaryl-CoA synthase, cytop... 266 2e-69
BC078695_1(BC078695|pid:none) Rattus norvegicus 3-hydroxy-3-meth... 264 5e-69
AK004902_1(AK004902|pid:none) Mus musculus adult male liver cDNA... 264 5e-69
AK098104_1(AK098104|pid:none) Mus musculus cDNA fis, clone TRACH... 264 5e-69
U12790_1(U12790|pid:none) Mus musculus chs HMG CoA synthase mRNA... 264 5e-69
B55729(B55729)hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5), m... 264 5e-69
BC049456_1(BC049456|pid:none) Danio rerio 3-hydroxy-3-methylglut... 264 6e-69
AE013599_2381(AE013599|pid:none) Drosophila melanogaster chromos... 263 1e-68
AB170919_1(AB170919|pid:none) Macaca fascicularis brain cDNA clo... 263 1e-68
(P54868) RecName: Full=Hydroxymethylglutaryl-CoA synthase, mitoc... 262 2e-68
(P22791) RecName: Full=Hydroxymethylglutaryl-CoA synthase, mitoc... 262 2e-68
(P13704) RecName: Full=Hydroxymethylglutaryl-CoA synthase, cytop... 261 3e-68
AK136171_1(AK136171|pid:none) Mus musculus in vitro fertilized e... 260 7e-68
AK146590_1(AK146590|pid:none) Mus musculus 13 days embryo liver ... 260 9e-68
(Q8JZK9) RecName: Full=Hydroxymethylglutaryl-CoA synthase, cytop... 260 9e-68
(P17425) RecName: Full=Hydroxymethylglutaryl-CoA synthase, cytop... 260 9e-68
AK078743_1(AK078743|pid:none) Mus musculus 15 days embryo male t... 260 9e-68
CR456850_1(CR456850|pid:none) Homo sapiens full open reading fra... 260 9e-68
BC090151_1(BC090151|pid:none) Xenopus laevis cDNA clone MGC:9843... 260 9e-68
(O02734) RecName: Full=Hydroxymethylglutaryl-CoA synthase, mitoc... 259 2e-67
(Q2KIE6) RecName: Full=Hydroxymethylglutaryl-CoA synthase, mitoc... 258 3e-67
BC031363_1(BC031363|pid:none) Mus musculus 3-hydroxy-3-methylglu... 257 6e-67
AF429389_1(AF429389|pid:none) Hevea brasiliensis hydroxymethylgl... 255 2e-66
AF188640_1(AF188640|pid:none) Brassica juncea HMG-CoA synthase (... 255 3e-66
CU928173_26(CU928173|pid:none) Zygosaccharomyces rouxii strain C... 255 3e-66
AY644708_1(AY644708|pid:none) Taxus x media 3-hydroxy-3-methylgl... 254 5e-66
AJ297414_1(AJ297414|pid:none) Phycomyces blakesleeanus hmgS gene... 253 1e-65
AE017343_509(AE017343|pid:none) Cryptococcus neoformans var. neo... 253 1e-65
CR382132_1246(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 253 1e-65
AF188639_1(AF188639|pid:none) Brassica juncea HMG-CoA synthase (... 252 2e-65
EF145686_1(EF145686|pid:none) Populus trichocarpa clone WS0112_K... 252 2e-65
AF148847_1(AF148847|pid:none) Brassica juncea HMG-CoA synthase (... 251 5e-65
AF188641_1(AF188641|pid:none) Brassica juncea HMG-CoA synthase (... 250 7e-65
AP007175_416(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 250 7e-65
X83882_1(X83882|pid:none) A.thaliana mRNA for 3-hydroxy-3-methyl... 250 9e-65
(P54873) RecName: Full=Hydroxymethylglutaryl-CoA synthase; ... 250 9e-65
DQ452574_1(DQ452574|pid:none) Medicago truncatula 3-hydroxy-3-me... 249 2e-64
EF119239_1(EF119239|pid:none) Chara vulgaris cytosolic 3-hydroxy... 247 6e-64
EU973939_1(EU973939|pid:none) Zea mays clone 424689 hydroxymethy... 246 1e-63
EU677841_1(EU677841|pid:none) Camptotheca acuminata 3-hydroxy-3-... 246 1e-63
AF166002_1(AF166002|pid:none) Dendroctonus jeffreyi 3-hydroxy-3-... 244 6e-63
AM920427_173(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 243 8e-63
(P54870) RecName: Full=Hydroxymethylglutaryl-CoA synthase 2; ... 241 3e-62
AP006859_1(AP006859|pid:none) Oryza sativa Japonica Group genomi... 240 7e-62
EU961019_1(EU961019|pid:none) Zea mays clone 230497 hydroxymethy... 240 7e-62
AK095492_1(AK095492|pid:none) Homo sapiens cDNA FLJ38173 fis, cl... 239 2e-61
EF119231_1(EF119231|pid:none) Mesostigma viride cytosolic 3-hydr... 230 1e-58
(P54871) RecName: Full=Hydroxymethylglutaryl-CoA synthase; ... 204 4e-51
DQ395087_1(DQ395087|pid:none) Arnebia euchroma hydroxy-methylglu... 154 7e-36
U12789_1(U12789|pid:none) Human clone HSH1 HMG CoA synthase mRNA... 147 1e-33
AY581197_1(AY581197|pid:none) Bos taurus 3-hydroxy-3-methylgluta... 90 7e-27
AK301594_1(AK301594|pid:none) Homo sapiens cDNA FLJ51350 complet... 95 7e-26
AK302276_1(AK302276|pid:none) Homo sapiens cDNA FLJ60950 complet... 95 9e-26
CP000113_4156(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 120 1e-25
AM484107_4(AM484107|pid:none) Vitis vinifera contig VV78X147473.... 119 3e-25
CP000517_523(CP000517|pid:none) Lactobacillus helveticus DPC 457... 82 1e-20
EU016627_72(EU016627|pid:none) Uncultured Group I marine crenarc... 102 4e-20
CP000866_824(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 100 2e-19
U12791_1(U12791|pid:none) Mus musculus spf HMG CoA synthase mRNA... 99 3e-19
AJ888382_1(AJ888382|pid:none) Bos taurus partial mRNA for 3-hydr... 98 6e-19
BT065147_1(BT065147|pid:none) Zea mays full-length cDNA clone ZM... 98 6e-19
CP000033_597(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 75 1e-18
EU863657_1(EU863657|pid:none) Mesocricetus auratus 3-hydroxy-3-m... 97 1e-18
AM180088_1938(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 93 2e-17
CP001365_2283(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 92 4e-17
CP000668_1478(CP000668|pid:none) Yersinia pestis Pestoides F, co... 59 4e-15
CP000513_759(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 84 1e-14
AF290094_1(AF290094|pid:none) Enterococcus faecium HMG-CoA synth... 82 6e-14
CP000901_2696(CP000901|pid:none) Yersinia pestis Angola, complet... 54 9e-14
AF290088_1(AF290088|pid:none) Staphylococcus haemolyticus HMG-Co... 81 9e-14
CP000411_872(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 80 2e-13
CP001351_408(CP001351|pid:none) Methylobacterium nodulans ORS 20... 80 2e-13
DQ243700_1(DQ243700|pid:none) Salvia miltiorrhiza HMG-CoA syntha... 79 4e-13
CP000854_3168(CP000854|pid:none) Mycobacterium marinum M, comple... 79 5e-13
AE015929_2110(AE015929|pid:none) Staphylococcus epidermidis ATCC... 78 6e-13
CP000423_1690(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 78 6e-13
CR936503_1481(CR936503|pid:none) Lactobacillus sakei strain 23K ... 77 1e-12
AF290086_1(AF290086|pid:none) Staphylococcus aureus HMG-CoA synt... 77 2e-12
AE017198_1397(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 76 2e-12
BA000028_2248(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 76 2e-12
CP000412_716(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 76 3e-12
BX571856_2577(BX571856|pid:none) Staphylococcus aureus subsp. au... 76 3e-12
AF290092_1(AF290092|pid:none) Enterococcus faecalis HMG-CoA synt... 75 4e-12
AE016830_1269(AE016830|pid:none) Enterococcus faecalis V583, com... 75 4e-12
AJ431696_3(AJ431696|pid:none) Paracoccus zeaxanthinifaciens mvaA... 75 7e-12
CP000685_675(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 75 7e-12
CP000425_1526(CP000425|pid:none) Lactococcus lactis subsp. cremo... 73 2e-11
AM295250_1876(AM295250|pid:none) Staphylococcus carnosus subsp. ... 73 3e-11
AE005176_1572(AE005176|pid:none) Lactococcus lactis subsp. lacti... 72 3e-11
AB283030_16(AB283030|pid:none) Streptomyces virginiae virginiamy... 72 4e-11
CP000416_1285(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 72 4e-11
CP000422_816(CP000422|pid:none) Pediococcus pentosaceus ATCC 257... 72 6e-11
AC159405_38(AC159405|pid:none) Trypanosoma brucei chromosome 8 c... 71 7e-11
CP000407_1633(CP000407|pid:none) Streptococcus suis 05ZYH33, com... 71 1e-10
AE017262_1419(AE017262|pid:none) Listeria monocytogenes str. 4b ... 70 2e-10
AB212624_14(AB212624|pid:none) Streptomyces sp. KO-3988 furaquin... 70 2e-10
AM263198_1432(AM263198|pid:none) Listeria welshimeri serovar 6b ... 70 2e-10
CP000109_1718(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 70 2e-10
AB183750_10(AB183750|pid:none) Streptomyces sp. KO-3988 viguiepi... 69 4e-10
CT005263_211(CT005263|pid:none) Leishmania major strain Friedlin... 69 5e-10
AM502242_150(AM502242|pid:none) Leishmania infantum chromosome 24. 69 5e-10
CP001620_32(CP001620|pid:none) Corynebacterium kroppenstedtii DS... 67 1e-09
CP000733_1744(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 66 3e-09
BT071292_1(BT071292|pid:none) Picea sitchensis clone WS02821_G04... 66 3e-09
AX887575_1(AX887575|pid:none) Sequence 3438 from Patent EP1033401. 65 7e-09
AJ634060_6(AJ634060|pid:none) Bacillus amyloliquefaciens bae gen... 65 7e-09
AM494961_219(AM494961|pid:none) Leishmania braziliensis chromoso... 64 9e-09
A98068(A98068) hypothetical protein mvaS [imported] - Streptococ... 64 2e-08
CP000920_1604(CP000920|pid:none) Streptococcus pneumoniae P1031,... 64 2e-08
AE005672_1633(AE005672|pid:none) Streptococcus pneumoniae TIGR4,... 64 2e-08
FM211187_1630(FM211187|pid:none) Streptococcus pneumoniae ATCC 7... 64 2e-08
CP000048_656(CP000048|pid:none) Borrelia hermsii DAH, complete g... 63 3e-08
AY850690_6(AY850690|pid:none) Symbiont bacterium of Paederus fus... 63 3e-08
DQ489736_972(DQ489736|pid:none) Leuconostoc citreum KM20, comple... 62 6e-08
AY907538_8(AY907538|pid:none) Uncultured bacterial symbiont of D... 59 3e-07
EU564531_1(EU564531|pid:none) Bacillus amyloliquefaciens strain ... 59 4e-07
CP000968_1161(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 59 4e-07
(P40830) RecName: Full=Putative polyketide biosynthesis protein ... 59 5e-07
CP000013_675(CP000013|pid:none) Borrelia garinii PBi, complete g... 58 7e-07
CP000085_1662(CP000085|pid:none) Burkholderia thailandensis E264... 58 9e-07
FM204883_1055(FM204883|pid:none) Streptococcus equi subsp. equi ... 58 9e-07
CU459003_1174(CU459003|pid:none) Magnetospirillum gryphiswaldens... 57 1e-06
FM204884_893(FM204884|pid:none) Streptococcus equi subsp. zooepi... 57 1e-06
AY652953_4(AY652953|pid:none) Lyngbya majuscula strain 19L curac... 56 2e-06
AL766850_115(AL766850|pid:none) Streptococcus agalactiae NEM316 ... 56 3e-06
AE009948_1278(AE009948|pid:none) Streptococcus agalactiae 2603V/... 56 3e-06
AM946015_757(AM946015|pid:none) Streptococcus uberis 0140J compl... 56 3e-06
CP000387_325(CP000387|pid:none) Streptococcus sanguinis SK36, co... 55 6e-06
AE014133_855(AE014133|pid:none) Streptococcus mutans UA159, comp... 55 6e-06
CP000976_655(CP000976|pid:none) Borrelia duttonii Ly, complete g... 54 1e-05
AM746676_3184(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 54 1e-05
(Q6L233) RecName: Full=UPF0219 protein PTO0384; &AE017261_384(A... 54 2e-05
CP000254_146(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 54 2e-05
(O26883) RecName: Full=UPF0219 protein MTH_792; 53 2e-05
CP001344_2634(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 53 2e-05
(Q2NHU7) RecName: Full=UPF0219 protein Msp_0117; &CP000102_116(... 53 3e-05
CP001142_192(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 52 4e-05
AF484556_48(AF484556|pid:none) Streptomyces atroolivaceus leinam... 52 5e-05
EF032014_2(EF032014|pid:none) Candidatus Endobugula sertula BryS... 52 5e-05
CP000049_655(CP000049|pid:none) Borrelia turicatae 91E135, compl... 52 5e-05
(O58410) RecName: Full=UPF0219 protein PH0677; &BA000001_703(BA... 52 6e-05
CP000023_553(CP000023|pid:none) Streptococcus thermophilus LMG 1... 51 1e-04
CP000419_493(CP000419|pid:none) Streptococcus thermophilus LMD-9... 51 1e-04
CP000125_2604(CP000125|pid:none) Burkholderia pseudomallei 1710b... 50 1e-04
BX571966_1020(BX571966|pid:none) Burkholderia pseudomallei strai... 50 1e-04
(Q51798) RecName: Full=UPF0219 protein PF0972; &AE009950_972(AE... 50 1e-04
(B6YXH7) RecName: Full=UPF0219 protein TON_1301; &CP000855_1307... 50 2e-04
AB037907_7(AB037907|pid:none) Kitasatospora griseola mevalonate ... 50 2e-04
CP001175_333(CP001175|pid:none) Listeria monocytogenes HCC23, co... 50 2e-04
(Q9UYY8) RecName: Full=UPF0219 protein PYRAB13690; &AJ248287_13... 49 3e-04
(Q5JFL6) RecName: Full=UPF0219 protein TK0181; &AP006878_182(AP... 49 4e-04
CP000259_743(CP000259|pid:none) Streptococcus pyogenes MGAS9429,... 48 7e-04
CP000056_665(CP000056|pid:none) Streptococcus pyogenes MGAS6180,... 48 7e-04
CP000493_1468(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 48 9e-04
CP000875_3851(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 48 9e-04
(A0AKV5) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 48 9e-04
CP000262_779(CP000262|pid:none) Streptococcus pyogenes MGAS10750... 47 0.002
AM295007_1103(AM295007|pid:none) Streptococcus pyogenes Manfredo... 47 0.002
AE009949_748(AE009949|pid:none) Streptococcus pyogenes MGAS8232,... 47 0.002
(A0B8Z1) RecName: Full=UPF0219 protein Mthe_1390; &CP000477_136... 46 0.003
(Q58941) RecName: Full=UPF0219 protein MJ1546; &A64493(A64493) ... 46 0.003
AK146351_1(AK146351|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 46 0.003
(A6VGF1) RecName: Full=UPF0219 protein MmarC7_0458; &CP000745_4... 46 0.003
(A4FWW6) RecName: Full=UPF0219 protein MmarC5_0379; &CP000609_3... 46 0.003
(Q6LXY3) RecName: Full=UPF0219 protein MMP1211; &BX950229_1211(... 45 0.004
AE014074_600(AE014074|pid:none) Streptococcus pyogenes MGAS315, ... 45 0.004
CP000867_1448(CP000867|pid:none) Methanococcus maripaludis C6, c... 45 0.004
(A1RSQ5) RecName: Full=UPF0219 protein Pisl_0811; &CP000504_803... 45 0.007
CP001338_2387(CP001338|pid:none) Candidatus Methanosphaerula pal... 44 0.010
CP001400_1444(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 43 0.022
CP001399_1545(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 43 0.022
CP000505_756(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 43 0.028
CP000395_693(CP000395|pid:none) Borrelia afzelii PKo, complete g... 43 0.028
(Q12UR3) RecName: Full=UPF0219 protein Mbur_1932; &CP000300_178... 43 0.028
T44125(T44125)hypothetical protein [imported] - Staphylococcus a... 43 0.028
AB353724_4(AB353724|pid:none) Staphylococcus saprophyticus subsp... 43 0.028
(Q8PYJ0) RecName: Full=UPF0219 protein MM_0871; &AE008384_871(A... 42 0.037
CP000568_928(CP000568|pid:none) Clostridium thermocellum ATCC 27... 42 0.049
(Q0W7K1) RecName: Full=UPF0219 protein UNCMA_25380; &AM114193_2... 42 0.063
(A5IRG0) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 41 0.083
(Q4L4Z3) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 41 0.083
(A6QFJ3) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 41 0.083
CP000227_1141(CP000227|pid:none) Bacillus cereus Q1, complete ge... 41 0.11
(Q8TIV0) RecName: Full=UPF0219 protein MA_4041; &AE010299_3935(... 41 0.11
(Q5HQI2) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 41 0.11
CU468135_2024(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 40 0.14
CP001186_1070(CP001186|pid:none) Bacillus cereus G9842, complete... 40 0.14
(Q971K8) RecName: Full=UPF0219 protein ST1349; &BA000023_1471(B... 40 0.14
FP236842_2150(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 40 0.18
(Q49WB6) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 40 0.18
CP000903_1062(CP000903|pid:none) Bacillus weihenstephanensis KBA... 40 0.18
(Q97CG9) RecName: Full=UPF0219 protein TV0132; &BA000011_132(BA... 40 0.18
CP001407_1071(CP001407|pid:none) Bacillus cereus 03BB102, comple... 40 0.18
(Q87N20) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 40 0.18
(Q81JG0) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 40 0.18
CP001177_1179(CP001177|pid:none) Bacillus cereus AH187, complete... 40 0.24
(Q9YAS0) RecName: Full=UPF0219 protein APE_1873.1; &BA000002_12... 40 0.24
(Q81GM0) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 40 0.24
AE017194_1286(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 40 0.24
CP001283_1167(CP001283|pid:none) Bacillus cereus AH820, complete... 40 0.24
A72574(A72574)probable acyl carrier protein synthase APE1873 - A... 40 0.24
(A9MGC9) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 40 0.24
(Q8Z7J6) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 39 0.32
CP000909_230(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 39 0.32
FM161958_1(FM161958|pid:none) Aphanomyces euteiches partial mRNA... 39 0.32
CP000682_1624(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 39 0.32
AE008691_512(AE008691|pid:none) Thermoanaerobacter tengcongensis... 39 0.41
(O85139) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 39 0.41
CP000141_1690(CP000141|pid:none) Carboxydothermus hydrogenoforma... 39 0.41
(Q9KET5) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 39 0.54
(Q9UWU0) RecName: Full=UPF0219 protein SSO0535; &AE006641_488(A... 38 0.70
(O34746) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 38 0.70
CP000764_849(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 38 0.70
AP011115_5256(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 38 0.70
CP001638_693(CP001638|pid:none) Geobacillus sp. WCH70, complete ... 38 0.70
S22432(S22432)hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5) - ... 38 0.92
AY682195_90(AY682195|pid:none) Lactobacillus plantarum bacteriop... 38 0.92
CP000040_387(CP000040|pid:none) Bacillus cereus E33L plasmid pE3... 37 1.2
CP000557_677(CP000557|pid:none) Geobacillus thermodenitrificans ... 37 1.2
CP001140_387(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 37 1.2
CT573213_6358(CT573213|pid:none) Frankia alni str. ACN14A chromo... 37 1.2
(A7ZZ48) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 37 1.6
(A1A9Y5) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 37 2.0
(Q75EI4) RecName: Full=Mediator of RNA polymerase II transcripti... 37 2.0
AE016814_281(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 37 2.0
AP009240_1155(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 37 2.0
(A8FBX4) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 37 2.0
(Q7M7J9) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 37 2.0
CP001251_881(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 36 2.7
FN357475_6(FN357475|pid:none) Schistosoma mansoni genome sequenc... 36 2.7
(A1VZG5) RecName: Full=Bifunctional protein glmU; Includes: Re... 36 2.7
(Q9PPA2) RecName: Full=Bifunctional protein glmU; Includes: Re... 36 3.5
CP000395_136(CP000395|pid:none) Borrelia afzelii PKo, complete g... 36 3.5
CP000724_2666(CP000724|pid:none) Alkaliphilus metalliredigens QY... 36 3.5
AM946015_1200(AM946015|pid:none) Streptococcus uberis 0140J comp... 35 4.5
CP001098_1019(CP001098|pid:none) Halothermothrix orenii H 168, c... 35 4.5
(A6VQV2) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 35 5.9
CP000546_3201(CP000546|pid:none) Burkholderia mallei NCTC 10229 ... 35 5.9
(A4TLS3) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 35 5.9
CP000010_1317(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 35 5.9
CP000124_2532(CP000124|pid:none) Burkholderia pseudomallei 1710b... 35 5.9
(A7FH25) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 35 5.9
BX571965_2161(BX571965|pid:none) Burkholderia pseudomallei strai... 35 5.9
CP000086_2008(CP000086|pid:none) Burkholderia thailandensis E264... 35 7.8
(B6YRP0) RecName: Full=S-adenosylmethionine synthetase; ... 35 7.8
CP000879_503(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 35 7.8
>(P54872) RecName: Full=Hydroxymethylglutaryl-CoA synthase A;
Short=HMG-CoA synthase A; EC=2.3.3.10;
AltName: Full=3-hydroxy-3-methylglutaryl coenzyme A
synthase A;
Length = 482
Score = 394 bits (1013), Expect = e-108
Identities = 193/193 (100%), Positives = 193/193 (100%)
Frame = +1
Query: 10 MTKPENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSL 189
MTKPENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSL
Sbjct: 1 MTKPENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSL 60
Query: 190 NAVNNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACY 369
NAVNNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACY
Sbjct: 61 NAVNNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACY 120
Query: 370 GGTSALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFE 549
GGTSALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFE
Sbjct: 121 GGTSALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFE 180
Query: 550 SGLRGVHMENVYD 588
SGLRGVHMENVYD
Sbjct: 181 SGLRGVHMENVYD 193
Score = 331 bits (848), Expect = 4e-89
Identities = 170/171 (99%), Positives = 171/171 (100%)
Frame = +2
Query: 773 RVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLAASAFSFKVEK 952
+VAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLAASAFSFKVEK
Sbjct: 312 KVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLAASAFSFKVEK 371
Query: 953 PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPSDETTNMFPGSFYLSS 1132
PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPSDETTNMFPGSFYLSS
Sbjct: 372 PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPSDETTNMFPGSFYLSS 431
Query: 1133 VDNAGIRKYDRTYSTSAVLGAFQRRQQISQSTIKSLNLFRATKSVLSILKK 1285
VDNAGIRKYDRTYSTSAVLGAFQRRQQISQSTIKSLNLFRATKSVLSILKK
Sbjct: 432 VDNAGIRKYDRTYSTSAVLGAFQRRQQISQSTIKSLNLFRATKSVLSILKK 482
Score = 121 bits (304), Expect = 5e-26
Identities = 59/70 (84%), Positives = 63/70 (90%)
Frame = +1
Query: 601 LVQKSFGRMLYNDFLNNPNDSRYASLEAYKNVKPEDTYFDSVLEKALSAITKNDYATKGC 780
LVQKSFGRMLYNDFLNNPNDSRYASLEAYKNVKPEDTYFDSVLEKALSAITKNDYATK
Sbjct: 255 LVQKSFGRMLYNDFLNNPNDSRYASLEAYKNVKPEDTYFDSVLEKALSAITKNDYATKVA 314
Query: 781 TNHFISQTIG 810
+++ +G
Sbjct: 315 PTTLLAKQLG 324
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,125,729,708
Number of extensions: 42575030
Number of successful extensions: 112736
Number of sequences better than 10.0: 267
Number of HSP's gapped: 112427
Number of HSP's successfully gapped: 503
Length of query: 432
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 301
Effective length of database: 627,191,635
Effective search space: 188784682135
Effective search space used: 188784682135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
4 |
| CH (FL, L) |
0 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |