Contig-U04356-1
Contig ID Contig-U04356-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04356-1 (Contig-U04356-1Q) /CSM_Contig/Contig-U04356-1Q.Seq.d
TGTATTTTTTAAATTTTCACACTACAACGACAACAAATATAATTCTTCAT
TATACAATACTTATATAATATACCACCTTATACAAACATACATACATACA
TACAAACATACATACATTCATAATATATAATCAATACATATAATTTTAAA
ATAAGAAATGTATCAGTTTATTAAAAATCTTTTACCAACCAAAGGTAATG
AAAGAAAACAACAAGAAACTAAAGATGCAATAACTGAAACTGTTGAAGAA
GCTAAACAAGAAGTATCATCAGTTGAAGAAATGGAATTCGACTTATCTTT
AGGTATAAATCAAACATCTGGTTCCCTTAATAAATTAGAAGAAGAAAGAG
AGAAATTATTTAAAACTGTTTCATTAATTGAAAATCAATTAAAATTATTA
TCAGAGACAGCATTAAATGAACATCAACAAGCAGAAAAAGAGAAATTAGA
AAAGATGTTAAAAGAAAGAGTGAAACCATCAGTTGAAAAAATGGATAAAG
AAATTGATATACTTACAAAGAAACTATTAGATTTATATCATAAGAGAGAT
TTATTAACACAAAAGAAAGTTTATACAGAGGATTCCGCTGAGGATGCAAC
AAAGATAAATACACCTGAACAAAAAGAATATATACCATTCGATACAATTT
CAAAAGGTAGTGATGACGTTGTTGGTTCAACAACTCCAAAAGAAGTTTAA
AAAAAGAATAACGAAATATAAAAGGAAAAAAAAAAAAAAATTAACAATTC
AATCATATATAAACTCATACAAACAAACAACAACAACAACAACAACAGCA
GTAAAACATCAATAATATACTTCATACAAATCTTTGGATAATTAAAAGCG
CATACTTTTTTATTTTTATTTTTTTTTTTTTTTTAAAAAAAAGCAATAAC
AACAATAATAAACCTGTAAATAAATAAAACACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

Gap no gap
Contig length 961
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3545605
End point 3546538
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 8
Link to clone list U04356
List of clone(s)

est1=SSH186F,1,328
est2=SSA291F,42,420
est3=SSM723Z,197,726
est4=SSJ854Z,218,726
est5=SSM135Z,302,932
est6=SSJ525Z,392,941
est7=VSE621Z,392,727
est8=SSH186Z,641,962
Translated Amino Acid sequence
vffkfshyndnkynsslyntyiiyhliqtyihtykhtyihni*sihiilk*EMYQFIKNL
LPTKGNERKQQETKDAITETVEEAKQEVSSVEEMEFDLSLGINQTSGSLNKLEEEREKLF
KTVSLIENQLKLLSETALNEHQQAEKEKLEKMLKERVKPSVEKMDKEIDILTKKLLDLYH
KRDLLTQKKVYTEDSAEDATKINTPEQKEYIPFDTISKGSDDVVGSTTPKEV*kknnei*
kekkkkinnsiiykliqtnnnnnnnssktsiiyfiqifg*lkahtflflfffff*kkait
tiinl*inktqkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
cif*iftlqrqqi*ffiiqylynippytnihtyiqtyihs*yiintynfkirnvsvy*ks
ftnqr**kkttrn*rcnn*nc*rs*trsiis*rngirlifryksniwfp**irrrkreii
*ncfin*ksikiiirdsik*tstsrkreirkdvkrksetis*kng*rn*ytyketirfis
*erfintkeslyrgfr*gcnkdkyt*tkriytirynfkr***rcwfnnskrslkke*rni
kgkkkkn*qfnhi*thtnkqqqqqqqq*ninnilhtnlwiiksayffififffflkksnn
nnnkpvnk*ntkkkkkkkkk


Frame B:
vffkfshyndnkynsslyntyiiyhliqtyihtykhtyihni*sihiilk*EMYQFIKNL
LPTKGNERKQQETKDAITETVEEAKQEVSSVEEMEFDLSLGINQTSGSLNKLEEEREKLF
KTVSLIENQLKLLSETALNEHQQAEKEKLEKMLKERVKPSVEKMDKEIDILTKKLLDLYH
KRDLLTQKKVYTEDSAEDATKINTPEQKEYIPFDTISKGSDDVVGSTTPKEV*kknnei*
kekkkkinnsiiykliqtnnnnnnnssktsiiyfiqifg*lkahtflflfffff*kkait
tiinl*inktqkkkkkkkkk


Frame C:
yflnfhtttttniilhytili*yttlykhtyihtnihtfiiynqyi*f*nkkcisllkif
yqpkvmkennkklkmq*lkllkklnkkyhqlkkwnstyl*v*ikhlvplin*kkkernyl
klfh*lkin*nyyqrqh*mninkqkkrn*krc*kke*nhqlkkwikkliylqrny*iyii
reiy*hkrkfiqriplrmqqr*ihlnkkniyhsiqfqkvvmtllvqqlqkkfkkritkyk
rkkkkkltiqsyinsykqtttttttavkhq*ytsyksldn*krilfyfyfffffkkkq*q
q**tck*ikhkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04356-1 (Contig-U04356-1Q)
/CSM_Contig/Contig-U04356-1Q.Seq.d
(961 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04356-1 (Contig-U04356-1Q) /CSM_Contig/Conti... 571 e-163
Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U07096-1 (Contig-U07096-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Conti... 36 0.068
Contig-U13065-1 (Contig-U13065-1Q) /CSM_Contig/Conti... 36 0.068
Contig-U12666-1 (Contig-U12666-1Q) /CSM_Contig/Conti... 36 0.068
Contig-U12065-1 (Contig-U12065-1Q) /CSM_Contig/Conti... 36 0.068
Contig-U11942-1 (Contig-U11942-1Q) /CSM_Contig/Conti... 36 0.068
Contig-U11816-1 (Contig-U11816-1Q) /CSM_Contig/Conti... 36 0.068

>Contig-U04356-1 (Contig-U04356-1Q) /CSM_Contig/Contig-U04356-1Q.Seq.d
Length = 961

Score = 571 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Plus


Query: 145 tttaaaataagaaatgtatcagtttattaaaaatcttttaccaaccaaaggtaatgaaag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttaaaataagaaatgtatcagtttattaaaaatcttttaccaaccaaaggtaatgaaag 204


Query: 205 aaaacaacaagaaactaaagatgcaataactgaaactgttgaagaagctaaacaagaagt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaacaacaagaaactaaagatgcaataactgaaactgttgaagaagctaaacaagaagt 264


Query: 265 atcatcagttgaagaaatggaattcgacttatctttaggtataaatcaaacatctggttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcatcagttgaagaaatggaattcgacttatctttaggtataaatcaaacatctggttc 324


Query: 325 ccttaataaattagaagaagaaagagagaaattatttaaaactgtttcattaattgaaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttaataaattagaagaagaaagagagaaattatttaaaactgtttcattaattgaaaa 384


Query: 385 tcaattaaaattattatcagagacagcattaaatgaacatcaacaagc 432
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaattaaaattattatcagagacagcattaaatgaacatcaacaagc 432


Score = 496 bits (250), Expect = e-140
Identities = 250/250 (100%)
Strand = Plus / Plus


Query: 476 ccatcagttgaaaaaatggataaagaaattgatatacttacaaagaaactattagattta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccatcagttgaaaaaatggataaagaaattgatatacttacaaagaaactattagattta 535


Query: 536 tatcataagagagatttattaacacaaaagaaagtttatacagaggattccgctgaggat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tatcataagagagatttattaacacaaaagaaagtttatacagaggattccgctgaggat 595


Query: 596 gcaacaaagataaatacacctgaacaaaaagaatatataccattcgatacaatttcaaaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcaacaaagataaatacacctgaacaaaaagaatatataccattcgatacaatttcaaaa 655


Query: 656 ggtagtgatgacgttgttggttcaacaactccaaaagaagtttaaaaaaagaataacgaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggtagtgatgacgttgttggttcaacaactccaaaagaagtttaaaaaaagaataacgaa 715


Query: 716 atataaaagg 725
||||||||||
Sbjct: 716 atataaaagg 725


Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus


Query: 1 tgtattttttaaattttcacactacaacgacaacaaatataattcttcattatacaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtattttttaaattttcacactacaacgacaacaaatataattcttcattatacaatac 60


Query: 61 ttat 64
||||
Sbjct: 61 ttat 64


Score = 115 bits (58), Expect = 9e-26
Identities = 58/58 (100%)
Strand = Plus / Plus


Query: 798 gcagtaaaacatcaataatatacttcatacaaatctttggataattaaaagcgcatac 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcagtaaaacatcaataatatacttcatacaaatctttggataattaaaagcgcatac 855


Score = 95.6 bits (48), Expect = 8e-20
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 885 aaaaaaaagcaataacaacaataataaacctgtaaataaataaaacac 932
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 aaaaaaaagcaataacaacaataataaacctgtaaataaataaaacac 932


Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 741 ttaacaattcaatcatatataaactcat 768
||||||||||||||||||||||||||||
Sbjct: 741 ttaacaattcaatcatatataaactcat 768


Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 477 catcagttgaaaaaatgga 495
||||||||||| |||||||
Sbjct: 267 catcagttgaagaaatgga 285


Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 267 catcagttgaagaaatgga 285
||||||||||| |||||||
Sbjct: 477 catcagttgaaaaaatgga 495


>Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Contig-U11842-1Q.Seq.d
Length = 1222

Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 892 agcaataacaacaataataa 911
||||||||||||||||||||
Sbjct: 317 agcaataacaacaataataa 336


>Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Contig-U11803-1Q.Seq.d
Length = 2021

Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 21 actacaacgacaacaaata 39
|||||||||||||||||||
Sbjct: 935 actacaacgacaacaaata 953


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,597
Number of Sequences: 6905
Number of extensions: 20597
Number of successful extensions: 2945
Number of sequences better than 10.0: 307
length of query: 961
length of database: 5,674,871
effective HSP length: 16
effective length of query: 945
effective length of database: 5,564,391
effective search space: 5258349495
effective search space used: 5258349495
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.17
Homology vs DNA
Query= Contig-U04356-1 (Contig-U04356-1Q) /CSM_Contig/Contig-U04356-1Q.Seq.d
(961 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 438 0.0 6
(C93381) Dictyostelium discoideum slug cDNA, clone SSM723. 460 0.0 2
(C90711) Dictyostelium discoideum slug cDNA, clone SSJ854. 394 0.0 2
(AU038915) Dictyostelium discoideum slug cDNA, clone SSM135. 365 0.0 4
(C91084) Dictyostelium discoideum slug cDNA, clone SSJ525. 365 e-148 4
(AU263242) Dictyostelium discoideum vegetative cDNA clone:VS... 357 e-108 2
(AU075120) Dictyostelium discoideum slug cDNA, clone SSA291. 252 2e-62 1
(AU061910) Dictyostelium discoideum slug cDNA, clone SLG573. 196 5e-57 2
(AU038037) Dictyostelium discoideum slug cDNA, clone SSH186. 115 3e-50 3
(AU073432) Dictyostelium discoideum slug cDNA, clone SSH186. 170 1e-49 2
(AG370890) Mus musculus molossinus DNA, clone:MSMg01-176B09.... 54 0.010 1
(AM437867) Vitis vinifera contig VV78X133858.3, whole genome... 40 0.11 2
(BX679010) Pinus pinaster root EST, clone RS18D04. 36 0.16 3
(BX572629) Zebrafish DNA sequence from clone CH211-195L15 in... 48 0.63 1
(CU861958) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.63 1
(ER584649) 1093015861877 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.63 1
(EJ290950) 1095377016517 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.63 1
(ED665991) GM_WBa0093F17.f GM_WBa Glycine max genomic clone ... 48 0.63 1
(ED628393) GM_WBa0027L13.r GM_WBa Glycine max genomic clone ... 48 0.63 1
(CC067525) CSU-K33r.7H21.SP6 CSU-K33r Aedes aegypti genomic ... 38 0.70 3
(AC168597) Strongylocentrotus purpuratus clone R3-3046O14, W... 46 1.1 2
(AC174830) Myotis lucifugus clone CH235-234J19, complete seq... 34 1.3 2
(AC078819) Homo sapiens 12q BAC RP11-490H24 (Roswell Park Ca... 34 1.3 2
(CU571338) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 1.4 9
(AL359596) Homo sapiens mRNA; cDNA DKFZp547P055 (from clone ... 34 1.6 2
(BC044618) Homo sapiens cDNA clone IMAGE:5269587. 34 1.6 2
(BC063467) Homo sapiens cDNA clone IMAGE:5193239, partial cds. 34 1.6 2
(CR857742) Pongo abelii mRNA; cDNA DKFZp469N1335 (from clone... 34 1.6 2
(BD158795) Primer for synthesizing full-length cDNA and use ... 34 1.7 2
(AX881146) Sequence 16051 from Patent EP1074617. 34 1.7 2
(AK024037) Homo sapiens cDNA FLJ13975 fis, clone Y79AA1001585. 34 1.7 2
(BC073939) Homo sapiens cDNA clone IMAGE:5241036, partial cds. 34 1.7 2
(CR620733) full-length cDNA clone CS0DC026YP02 of Neuroblast... 34 1.7 2
(BX394971) human full-length cDNA 3-PRIME end of clone CS0DC... 34 1.7 2
(BI755316) 603022791F1 NIH_MGC_114 Homo sapiens cDNA clone I... 34 1.7 2
(BX394972) human full-length cDNA 5-PRIME end of clone CS0DC... 34 1.7 2
(DU378821) 1098312121196 CHORI-243 Ovis aries genomic clone ... 40 1.7 2
(CD103209) AGENCOURT_14007299 NIH_MGC_186 Homo sapiens cDNA ... 34 1.7 2
(BQ188914) UI-E-EJ1-ajx-h-04-0-UI.r1 UI-E-EJ1 Homo sapiens c... 34 1.7 2
(BQ188820) UI-E-EJ1-ajx-m-02-0-UI.r1 UI-E-EJ1 Homo sapiens c... 34 1.7 2
(CK300283) UI-E-EJ1-ajx-h-04-0-UI.s1 UI-E-EJ1 Homo sapiens c... 34 1.7 2
(AV681894) Homo sapiens cDNA clone:GKBAND08, 5'end, expresse... 34 1.7 2
(BM978060) UI-CF-EC1-aeb-e-19-0-UI.s1 UI-CF-EC1 Homo sapiens... 34 1.7 2
(BI063370) IL3-UT0117-020401-539-E05 UT0117 Homo sapiens cDN... 34 1.7 2
(BI062698) IL3-UT0117-210301-513-G07 UT0117 Homo sapiens cDN... 34 1.7 2
(CB050511) NISC_gj18a04.x1 NCI_CGAP_Pr28 Homo sapiens cDNA c... 34 1.7 2
(BV174813) sqnm74434 Human DNA (Sequenom) Homo sapiens STS g... 34 1.8 2
(CP000439) Francisella tularensis subsp. novicida U112, comp... 40 1.8 16
(AC103914) Homo sapiens BAC clone CTD-2037K2 from 2, complet... 36 2.2 3
(BH134834) ENTOJ26TF Entamoeba histolytica Sheared DNA Entam... 36 2.3 2
(AM452834) Vitis vinifera contig VV78X238576.27, whole genom... 42 2.4 2
(CT573495) Zebrafish DNA sequence from clone DKEY-29J19 in l... 46 2.5 1
(AP009142) Nematalosa japonica mitochondrial DNA, complete g... 46 2.5 1
(AL928928) Zebrafish DNA sequence from clone CH211-127C19 in... 46 2.5 1
(CT025583) Mouse DNA sequence from clone RP24-68O11 on chrom... 46 2.5 1
(AC121968) Mus musculus BAC clone RP24-272N4 from chromosome... 46 2.5 1
(AC112685) Mus musculus chromosome 3, clone RP23-340E10, com... 46 2.5 1
(AY113913) Arabidopsis thaliana putative thaumatin protein (... 46 2.5 1
(AM485993) Vitis vinifera, whole genome shotgun sequence, co... 46 2.5 1
(AL161588) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 2.5 1
(AL022373) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 46 2.5 1
(AF360165) Arabidopsis thaliana putative thaumatin protein (... 46 2.5 1
(AC207600) Medicago truncatula chromosome 2 BAC clone mth2-3... 46 2.5 1
(EA100001) Sequence 1629 from patent US 7193069. 46 2.5 1
(EA064871) Sequence 2696 from patent US 7171311. 46 2.5 1
(DL228753) Novel full length cDNA. 46 2.5 1
(DL211775) Full length cDNA. 46 2.5 1
(DL178705) Novel full length cDNA. 46 2.5 1
(DD417361) Diagnosis and Prognosis of Breast Cancer Patients. 46 2.5 1
(DD132110) Diagnosis and Prognosis of Breast Cancer Patients. 46 2.5 1
(CS168384) Sequence 1629 from Patent EP1580263. 46 2.5 1
(CQ851152) Sequence 1621 from Patent EP1447413. 46 2.5 1
(BD378659) Human Polynucleotides, Polypeptides, and Antibodies. 46 2.5 1
(BD139313) Extended cDNA of secretory protein. 46 2.5 1
(BD139312) Extended cDNA of secretory protein. 46 2.5 1
(AX834505) Sequence 1629 from Patent EP1347046. 46 2.5 1
(AX506511) Sequence 1206 from Patent WO0216655. 46 2.5 1
(AX410960) Sequence 3607 from Patent WO0229103. 46 2.5 1
(GM080130) Sequence 30808 from Patent WO2005116250. 46 2.5 1
(GC699156) Sequence 14401 from patent US 6812339. 46 2.5 1
(GC699047) Sequence 14292 from patent US 6812339. 46 2.5 1
(AR783041) Sequence 3604 from patent US 6974667. 46 2.5 1
(BX647111) Homo sapiens mRNA; cDNA DKFZp686K24244 (from clon... 46 2.5 1
(BC010876) Homo sapiens nei endonuclease VIII-like 1 (E. col... 46 2.5 1
(AY257544) Homo sapiens nei endonuclease VIII-like 1 (E. col... 46 2.5 1
(AK128372) Homo sapiens cDNA FLJ46515 fis, clone THYMU3032867. 46 2.5 1
(AK097008) Homo sapiens cDNA FLJ39689 fis, clone SMINT201062... 46 2.5 1
(AK026216) Homo sapiens cDNA: FLJ22563 fis, clone HSI01928. 46 2.5 1
(AK026055) Homo sapiens cDNA: FLJ22402 fis, clone HRC08117. 46 2.5 1
(AC105137) Homo sapiens chromosome 15, clone CTD-2562G15, co... 46 2.5 1
(AC068338) Homo sapiens chromosome 15, clone RP11-817O13, co... 46 2.5 1
(AC152432) Bos taurus clone CH240-6B3, WORKING DRAFT SEQUENC... 46 2.5 1
(AC124844) Rattus norvegicus clone CH230-6E22, *** SEQUENCIN... 46 2.5 1
(AC121260) Mus musculus clone RP24-68O11, WORKING DRAFT SEQU... 46 2.5 1
(AC115521) Rattus norvegicus chromosome 18 clone CH230-1D8, ... 46 2.5 1
(AC094975) Rattus norvegicus chromosome 18 clone CH230-6M10,... 46 2.5 1
(AC093961) Rattus norvegicus clone CH230-4H22, WORKING DRAFT... 46 2.5 1
(AC220282) Bos taurus clone CH240-368G3, WORKING DRAFT SEQUE... 46 2.5 1
(AC220277) Bos taurus clone CH240-368F15, WORKING DRAFT SEQU... 46 2.5 1
(AC181220) Strongylocentrotus purpuratus clone R3-4009A14, W... 46 2.5 1
(AC179874) Strongylocentrotus purpuratus clone R3-1006O24, W... 46 2.5 1
(AC179297) Strongylocentrotus purpuratus clone R3-45N18, WOR... 46 2.5 1
(AC178379) Strongylocentrotus purpuratus clone R3-3107F23, W... 46 2.5 1
(BH353989) CH230-33H18.TV CHORI-230 Segment 1 Rattus norvegi... 46 2.5 1
(AZ273840) RPCI-23-167A1.TJ RPCI-23 Mus musculus genomic clo... 46 2.5 1
(AZ009639) RPCI-23-390C16.TJ RPCI-23 Mus musculus genomic cl... 46 2.5 1
(EK229009) 1095460171762 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(EK102186) 1092963025146 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(EK097695) 1092962049260 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(ED684138) GM_WBb0018G23.r GM_WBb Glycine max genomic clone ... 46 2.5 1
(EL850568) CBXT8673.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ... 46 2.5 1
(DR354583) 11062723 CERES-AN65 Arabidopsis thaliana cDNA clo... 46 2.5 1
(DB534159) Homo sapiens hippocampus cDNA, RIKEN full-length ... 46 2.5 1
(DB346379) Homo sapiens cDNA clone THYMU3032867, 3' end, mRN... 46 2.5 1
(DB332069) Homo sapiens cDNA clone SMINT2010629, 3' end, mRN... 46 2.5 1
(DB319569) Homo sapiens cDNA clone HLUNG2012666, 3' end, mRN... 46 2.5 1
(DB079413) Homo sapiens cDNA clone TESTI4024568, 5' end, mRN... 46 2.5 1
(CX821052) JGI_CAAK1886.rev NIH_XGC_tropBrn3 Xenopus (Silura... 46 2.5 1
(CN085910) EC2BBA26BG03.g1 Xenopus tropicalis xtbs plasmid l... 46 2.5 1
(CN085909) EC2BBA26BG03.b1 Xenopus tropicalis xtbs plasmid l... 46 2.5 1
(CK824106) ij65b12.x6 Human insulinoma Homo sapiens cDNA clo... 46 2.5 1
(AI934214) wn97g03.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone I... 46 2.5 1
(CA944521) UI-CF-FN0-afp-h-17-0-UI.s1 UI-CF-FN0 Homo sapiens... 46 2.5 1
(CA442550) UI-H-DI0-avo-h-15-0-UI.s1 NCI_CGAP_DI0 Homo sapie... 46 2.5 1
(AI925612) wo34c09.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ... 46 2.5 1
(AI913135) wa10a10.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone... 46 2.5 1
(AI867438) wb71d03.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 46 2.5 1
(AI865117) wk08a10.x1 NCI_CGAP_Lym12 Homo sapiens cDNA clone... 46 2.5 1
(AI656745) tt53h06.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 46 2.5 1
(AI638424) tt31g11.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 46 2.5 1
(AI608804) tw21e10.x1 NCI_CGAP_Brn52 Homo sapiens cDNA clone... 46 2.5 1
(BX770983) Xenopus tropicalis EST, clone TEgg030l23 3'. 46 2.5 1
(BX111548) RZPD Homo sapiens cDNA clone IMAGp998M18201 = IMA... 46 2.5 1
(BU861210) AGENCOURT_10433465 NIH_MGC_126 Homo sapiens cDNA ... 46 2.5 1
(BU732547) UI-E-CQ1-afx-p-14-0-UI.s1 UI-E-CQ1 Homo sapiens c... 46 2.5 1
(BQ028756) UI-H-DF0-arp-f-08-0-UI.s1 NCI_CGAP_DF0 Homo sapie... 46 2.5 1
(BQ028738) UI-H-DF0-arp-b-08-0-UI.s1 NCI_CGAP_DF0 Homo sapie... 46 2.5 1
(BQ002480) UI-H-EI1-ayw-o-14-0-UI.s1 NCI_CGAP_EI1 Homo sapie... 46 2.5 1
(BP835997) Arabidopsis thaliana cDNA clone:RAFL22-15-C09, 5'... 46 2.5 1
(BP835746) Arabidopsis thaliana cDNA clone:RAFL22-14-F20, 5'... 46 2.5 1
(AI393566) tg46c11.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 46 2.5 1
(AI373305) qz45a03.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone... 46 2.5 1
(AI341866) qt10d04.x1 NCI_CGAP_GC4 Homo sapiens cDNA clone I... 46 2.5 1
(AI290102) qw26c09.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone I... 46 2.5 1
(AI280739) qw07c03.x1 NCI_CGAP_Ut3 Homo sapiens cDNA clone I... 46 2.5 1
(AI079757) oy43b02.s1 Soares_parathyroid_tumor_NbHPA Homo sa... 46 2.5 1
(BP829166) Arabidopsis thaliana cDNA clone:RAFL22-81-D10, 5'... 46 2.5 1
(BP823359) Arabidopsis thaliana cDNA clone:RAFL22-64-M23, 5'... 46 2.5 1
(BP822234) Arabidopsis thaliana cDNA clone:RAFL22-60-K19, 5'... 46 2.5 1
(BP819920) Arabidopsis thaliana cDNA clone:RAFL22-52-N15, 5'... 46 2.5 1
(BP818408) Arabidopsis thaliana cDNA clone:RAFL22-48-A18, 5'... 46 2.5 1
(BP398699) Homo sapiens mRNA, clone: htp-53-01, 3' end, expr... 46 2.5 1
(BM894492) ij65b12.y1 Human insulinoma Homo sapiens cDNA clo... 46 2.5 1
(BM894220) ij65b12.x1 Human insulinoma Homo sapiens cDNA clo... 46 2.5 1
(BM725607) UI-E-EJ0-aig-j-11-0-UI.r1 UI-E-EJ0 Homo sapiens c... 46 2.5 1
(BM678088) UI-E-EJ0-aig-j-11-0-UI.s1 UI-E-EJ0 Homo sapiens c... 46 2.5 1
(AA927220) om17a10.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 46 2.5 1
(AA883584) al46c05.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 46 2.5 1
(AA833865) od62h07.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA832090) oc94h09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA831660) oc83g09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA824509) oc82e09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA744383) ny63d09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA731925) nz83b02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA724197) ai09d12.s1 Soares_parathyroid_tumor_NbHPA Homo sa... 46 2.5 1
(AA668993) aa81c10.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(AA604501) no73b09.s1 NCI_CGAP_AA1 Homo sapiens cDNA clone I... 46 2.5 1
(AA595778) nj28h10.s1 NCI_CGAP_AA1 Homo sapiens cDNA clone I... 46 2.5 1
(BF512872) UI-H-BW1-amu-h-09-0-UI.s1 NCI_CGAP_Sub7 Homo sapi... 46 2.5 1
(BE529652) M75C22STM Arabidopsis developing seed Arabidopsis... 46 2.5 1
(BE528878) M72P15STM Arabidopsis developing seed Arabidopsis... 46 2.5 1
(W80730) zh51e02.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo ... 46 2.5 1
(N34970) yy50g09.s1 Soares_multiple_sclerosis_2NbHMSP Homo s... 46 2.5 1
(H78102) yu83f11.s1 Soares fetal liver spleen 1NFLS Homo sap... 46 2.5 1
(AW976530) EST388639 MAGE resequences, MAGN Homo sapiens cDN... 46 2.5 1
(AW575225) UI-HF-BK0-aav-c-05-0-UI.s1 NIH_MGC_36 Homo sapien... 46 2.5 1
(AW439765) hb77b08.x1 NCI_CGAP_Ut2 Homo sapiens cDNA clone I... 46 2.5 1
(AW192722) xl50c05.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone ... 46 2.5 1
(AW088483) xd27e08.x1 NCI_CGAP_Ov23 Homo sapiens cDNA clone ... 46 2.5 1
(AW014988) UI-H-BI0p-aaz-d-07-0-UI.s1 NCI_CGAP_Sub2 Homo sap... 46 2.5 1
(AA280803) zs99a08.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 46 2.5 1
(CU915365) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.3 6
(EJ409409) 1093012124353 Global-Ocean-Sampling_GS-28-01-01-1... 32 3.5 3
(AC152473) Dasypus novemcinctus clone VMRC5-289A19, WORKING ... 44 3.9 3
(AC021086) Homo sapiens chromosome 5 clone CTD-2001C12, comp... 38 4.1 2
(CU784772) A BAC library has been constructed from PN40024 g... 38 4.2 2
(AM430436) Vitis vinifera contig VV78X172923.2, whole genome... 32 4.7 3
(AC214001) Zea mays chromosome 9 clone CH201-133G4; ZMMBBc01... 32 4.8 2
(BX640665) Homo sapiens mRNA; cDNA DKFZp686O08147 (from clon... 36 4.9 3
(DQ398104) Helicosporidium sp. ex Simulium jonesii plastid, ... 44 5.0 3
(AM463132) Vitis vinifera contig VV78X249365.2, whole genome... 32 5.9 2
(AL671925) Mouse DNA sequence from clone RP23-236O21 on chro... 36 6.3 5
(AM485988) Vitis vinifera contig VV79X001650.1, whole genome... 32 6.3 3
(AM486122) Vitis vinifera contig VV78X208783.3, whole genome... 38 6.7 3
(AC201128) Strongylocentrotus purpuratus clone R3-14A17, WOR... 40 6.8 2
(GD211713) G1045P379RD15.T1 Aplysia californica Pooled Norma... 42 6.8 2
(BG572640) 602593740F1 NIH_MGC_79 Homo sapiens cDNA clone IM... 38 7.1 2
(FH318611) CHO_OF4493xc02r1.ab1 CHO_OF4 Nicotiana tabacum ge... 38 7.5 2
(CT558742) A BAC library has been constructed from cultivar ... 38 8.0 2
(AM451327) Vitis vinifera contig VV78X173201.2, whole genome... 34 8.1 3
(AC232839) Choloepus hoffmanni clone CH281-528M21, WORKING D... 40 8.4 3
(AL607143) Mouse DNA sequence from clone RP23-455G15 on chro... 36 9.5 4
(AC225754) Tupaia belangeri clone CH275-580G9, WORKING DRAFT... 36 9.6 7
(AC226507) Solanum lycopersicum chromosome 2 clone C02HBa013... 40 9.7 5
(EU161283) Solanum lycopersicum clone BAC L136C6 transcripti... 40 9.7 5
(AC122544) Genomic sequence for Lycopersicon esculentum, clo... 40 9.7 5
(BX284628) Zebrafish DNA sequence from clone DKEY-205I14 in ... 44 9.8 1
(BV613879) S215P60396RF2.T0 Clara Pan troglodytes troglodyte... 44 9.8 1
(BV245327) S234P6168FA12.T0 EnglishShepherd Canis familiaris... 44 9.8 1
(AL606976) Mouse DNA sequence from clone RP23-113P22 on chro... 44 9.8 1
(AM452757) Vitis vinifera contig VV78X155547.10, whole genom... 44 9.8 1
(AL161897) Human DNA sequence from clone RP11-262G14 on chro... 44 9.8 1
(AE014309) Homo sapiens chromosome 13q34 schizophrenia regio... 44 9.8 1
(AC079403) Homo sapiens BAC clone RP11-704A20 from 4, comple... 44 9.8 1
(AC144638) Pongo abelii clone CH253-481N20, WORKING DRAFT SE... 44 9.8 1
(AC139953) Rattus norvegicus clone CH230-113D13, WORKING DRA... 44 9.8 1
(AC094606) Rattus norvegicus clone CH230-4P12, WORKING DRAFT... 44 9.8 1
(CU137707) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.8 1
(AC221755) Bos taurus clone CH240-386F11, WORKING DRAFT SEQU... 44 9.8 1
(AC200365) Pongo abelii clone CH253-150E20, WORKING DRAFT SE... 44 9.8 1
(AC185208) Dasypus novemcinctus clone VMRC5-104A16, WORKING ... 44 9.8 1
(AC183711) Oryctolagus cuniculus clone LB1-209F14, WORKING D... 44 9.8 1
(AC178356) Strongylocentrotus purpuratus clone R3-3105M15, W... 44 9.8 1
(AC173265) Bos taurus clone CH240-181L10, WORKING DRAFT SEQU... 44 9.8 1
(AC167381) Bos taurus clone CH240-194L16, WORKING DRAFT SEQU... 44 9.8 1
(AC011788) Homo sapiens clone RP11-17C16, WORKING DRAFT SEQU... 44 9.8 1
(AZ671513) ENTGU37TR Entamoeba histolytica Sheared DNA Entam... 44 9.8 1
(ER728035) SB_BBc01-F09.R SB_BBc Sorghum bicolor genomic 3',... 44 9.8 1
(ER724378) SB_BBc10-E23.F SB_BBc Sorghum bicolor genomic 5',... 44 9.8 1
(ER423244) 1092963726504 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.8 1
(EJ547495) 1092959278914 Global-Ocean-Sampling_GS-29-01-01-1... 44 9.8 1
(EJ099489) 1095462397557 Global-Ocean-Sampling_GS-26-01-01-1... 44 9.8 1
(EI996826) SB_BBc140-C04.F SB_BBc Sorghum bicolor genomic 5'... 44 9.8 1
(DU532541) 1098890493258 CHORI-243 Ovis aries genomic clone ... 44 9.8 1
(DU330249) 1098268232959 CHORI-243 Ovis aries genomic clone ... 44 9.8 1
(CW403933) fsbb001f095n23f0 Sorghum methylation filtered lib... 44 9.8 1
(CW198764) 104_623_11183148_148_36842_038 Sorghum methylatio... 44 9.8 1
(CW198763) 104_623_11183148_116_36843_038 Sorghum methylatio... 44 9.8 1
(CW085764) 104_429_10946572_116_32520_012 Sorghum methylatio... 44 9.8 1
(CL704000) SP__Bb0009F21.r SP__Bb Sorghum propinquum genomic... 44 9.8 1
(CL146919) ISB1-147N24_T7.1 ISB1 Xenopus (Silurana) tropical... 44 9.8 1
(EG965575) AU_Ich_026C_A06 Whole organism normalized cDNA li... 44 9.8 1
(EG958200) AU_Ich_005B_E09 Whole organism normalized cDNA li... 44 9.8 1
(DN469427) USDA-FP_143409 Diaphorina citri Kuwayama (Hemipte... 44 9.8 1
(CX906228) JGI_CAAM15826.rev NIH_XGC_tropTe3 Xenopus (Silura... 44 9.8 1
(CX893971) JGI_CAAM5572.rev NIH_XGC_tropTe3 Xenopus (Siluran... 44 9.8 1
(CX813307) JGI_CAAJ23984.rev NIH_XGC_tropBrn2 Xenopus (Silur... 44 9.8 1
(CX809494) JGI_CAAJ19872.rev NIH_XGC_tropBrn2 Xenopus (Silur... 44 9.8 1
(CX809376) JGI_CAAJ19802.rev NIH_XGC_tropBrn2 Xenopus (Silur... 44 9.8 1
(CD325725) AGENCOURT_14142261 NICHD_XGC_Eye1 Xenopus laevis ... 44 9.8 1
(BY908684) Cryptomeria japonica cDNA clone: CMFL037_B15, 3'e... 44 9.8 1
(BY903036) Cryptomeria japonica cDNA clone: CMFL019_P21, 3'e... 44 9.8 1
(BP646079) Arabidopsis thaliana cDNA clone:RAFL19-70-P14, 3'... 44 9.8 1
(GO227215) CAGB6063.rev CAGB Alvinella pompejana Normalized ... 44 9.8 1
(GH458480) CCUA2031.b1 CCUA Peromyscus polionotus subgrisieu... 44 9.8 1
(FK342852) 454GmaGlobSeed77484 Soybean Seeds Containing Glob... 44 9.8 1
(FK033440) XMC_Ea0007D08r XMC_Ea Xiphophorus maculatus x Xip... 44 9.8 1

>(AC116984) Dictyostelium discoideum chromosome 2 map 2567470-3108875
strain AX4, complete sequence.
Length = 541399

Score = 438 bits (221), Expect(6) = 0.0
Identities = 221/221 (100%)
Strand = Plus / Minus


Query: 155 gaaatgtatcagtttattaaaaatcttttaccaaccaaaggtaatgaaagaaaacaacaa 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203783 gaaatgtatcagtttattaaaaatcttttaccaaccaaaggtaatgaaagaaaacaacaa 203724


Query: 215 gaaactaaagatgcaataactgaaactgttgaagaagctaaacaagaagtatcatcagtt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203723 gaaactaaagatgcaataactgaaactgttgaagaagctaaacaagaagtatcatcagtt 203664


Query: 275 gaagaaatggaattcgacttatctttaggtataaatcaaacatctggttcccttaataaa 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203663 gaagaaatggaattcgacttatctttaggtataaatcaaacatctggttcccttaataaa 203604


Query: 335 ttagaagaagaaagagagaaattatttaaaactgtttcatt 375
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 203603 ttagaagaagaaagagagaaattatttaaaactgtttcatt 203563

Score = 365 bits (184), Expect(6) = 0.0
Identities = 184/184 (100%)
Strand = Plus / Minus


Query: 504 ttgatatacttacaaagaaactattagatttatatcataagagagatttattaacacaaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203251 ttgatatacttacaaagaaactattagatttatatcataagagagatttattaacacaaa 203192


Query: 564 agaaagtttatacagaggattccgctgaggatgcaacaaagataaatacacctgaacaaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203191 agaaagtttatacagaggattccgctgaggatgcaacaaagataaatacacctgaacaaa 203132


Query: 624 aagaatatataccattcgatacaatttcaaaaggtagtgatgacgttgttggttcaacaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203131 aagaatatataccattcgatacaatttcaaaaggtagtgatgacgttgttggttcaacaa 203072


Query: 684 ctcc 687
||||
Sbjct: 203071 ctcc 203068

Score = 115 bits (58), Expect(6) = 0.0
Identities = 58/58 (100%)
Strand = Plus / Minus


Query: 798 gcagtaaaacatcaataatatacttcatacaaatctttggataattaaaagcgcatac 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202957 gcagtaaaacatcaataatatacttcatacaaatctttggataattaaaagcgcatac 202900

Score = 105 bits (53), Expect(6) = 0.0
Identities = 56/57 (98%)
Strand = Plus / Minus


Query: 376 aattgaaaatcaattaaaattattatcagagacagcattaaatgaacatcaacaagc 432
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 203379 aattgaaaatcaattaaaaatattatcagagacagcattaaatgaacatcaacaagc 203323

Score = 63.9 bits (32), Expect(6) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Minus


Query: 1 tgtattttttaaattttcacactacaacgaca 32
||||||||||||||||||||||||||||||||
Sbjct: 203937 tgtattttttaaattttcacactacaacgaca 203906

Score = 56.0 bits (28), Expect(6) = 0.0
Identities = 28/28 (100%)
Strand = Plus / Minus


Query: 741 ttaacaattcaatcatatataaactcat 768
||||||||||||||||||||||||||||
Sbjct: 203014 ttaacaattcaatcatatataaactcat 202987

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 907,847,287
Number of extensions: 60735553
Number of successful extensions: 5649427
Number of sequences better than 10.0: 261
Length of query: 961
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 937
Effective length of database: 99,340,224,878
Effective search space: 93081790710686
Effective search space used: 93081790710686
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04356-1 (Contig-U04356-1Q) /CSM_Contig/Contig-U04356-1Q.Seq.d
(961 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116984_82(AC116984|pid:none) Dictyostelium discoideum chromoso... 318 2e-85
CP000227_542(CP000227|pid:none) Bacillus cereus Q1, complete gen... 45 0.003
CP000923_199(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 45 0.005
CP000924_1961(CP000924|pid:none) Thermoanaerobacter pseudethanol... 45 0.005
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo... 43 0.014
CP000581_438(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 43 0.019
AM910983_84(AM910983|pid:none) Plasmodium knowlesi strain H chro... 42 0.042
CP001185_936(CP001185|pid:none) Thermosipho africanus TCF52B, co... 41 0.071
(Q49419) RecName: Full=Uncharacterized protein MG328; &C64236(C... 40 0.092
AF335500_1(AF335500|pid:none) Physarum polycephalum major plasmo... 40 0.092
AE000657_451(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 40 0.16
AY596296_352(AY596296|pid:none) Haloarcula marismortui ATCC 4304... 40 0.16
CP000680_2425(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 39 0.27
CP001098_1837(CP001098|pid:none) Halothermothrix orenii H 168, c... 38 0.46
DQ120673_1(DQ120673|pid:none) Hylobates lar rcCTAGE5 gene, parti... 38 0.46
CU633899_57(CU633899|pid:none) Podospora anserina genomic DNA ch... 38 0.46
CP001399_63(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, c... 38 0.46
CU633900_426(CU633900|pid:none) Podospora anserina genomic DNA c... 38 0.46
CP001400_63(CP001400|pid:none) Sulfolobus islandicus M.14.25, co... 38 0.46
A64505(A64505)P115 homolog - Methanococcus jannaschii 38 0.60
CR954217_68(CR954217|pid:none) Ostreococcus tauri strain OTTH059... 37 0.78
AY060725_1(AY060725|pid:none) Drosophila melanogaster GH17414 fu... 37 0.78
AE013599_3473(AE013599|pid:none) Drosophila melanogaster chromos... 37 0.78
CP001287_3069(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 37 0.78
U69899_1(U69899|pid:none) Rhynchosciara americana Rap8 (Rac-3-1)... 37 1.0
BC127551_1(BC127551|pid:none) Xenopus tropicalis hypothetical pr... 37 1.0
CP000395_557(CP000395|pid:none) Borrelia afzelii PKo, complete g... 37 1.0
AM910986_171(AM910986|pid:none) Plasmodium knowlesi strain H chr... 37 1.0
BC167452_1(BC167452|pid:none) Xenopus tropicalis cDNA clone IMAG... 37 1.0
AB371588_1(AB371588|pid:none) Homo sapiens GOLGB1 mRNA for golgi... 37 1.0
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 37 1.0
A56539(A56539;S37536) giantin - human &X75304_1(X75304|pid:none) 37 1.0
CP000813_1015(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 37 1.3
AM486900_1(AM486900|pid:none) Vitis vinifera contig VV78X153020.... 37 1.3
CP000885_2162(CP000885|pid:none) Clostridium phytofermentans ISD... 37 1.3
CP000764_547(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 37 1.3
EU371992_1(EU371992|pid:none) Paenibacillus polymyxa PmxA, PmxB,... 37 1.3
CP001107_289(CP001107|pid:none) Eubacterium rectale ATCC 33656, ... 36 1.7
CR940347_490(CR940347|pid:none) Theileria annulata strain Ankara... 36 1.7
DQ363679_1(DQ363679|pid:none) Streblomastix strix RPL4 gene, par... 36 1.7
BC030655_1(BC030655|pid:none) Homo sapiens CTAGE family, member ... 36 1.7
AY596297_161(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 36 1.7
(Q811D2) RecName: Full=Ankyrin repeat domain-containing protein ... 36 1.7
CP001291_4282(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 36 1.7
AK173096_1(AK173096|pid:none) Mus musculus premature mRNA for mK... 36 1.7
CP001336_513(CP001336|pid:none) Desulfitobacterium hafniense DCB... 36 2.3
BC047762_1(BC047762|pid:none) Homo sapiens STE20-like kinase (ye... 36 2.3
AB002804_1(AB002804|pid:none) Homo sapiens mRNA for hSLK, comple... 36 2.3
FN357341_2(FN357341|pid:none) Schistosoma mansoni genome sequenc... 36 2.3
(Q9H2G2) RecName: Full=STE20-like serine/threonine-protein kinas... 36 2.3
BC071232_1(BC071232|pid:none) Mus musculus structural maintenanc... 36 2.3
CP000499_80(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso... 36 2.3
AM920436_71(AM920436|pid:none) Penicillium chrysogenum Wisconsin... 36 2.3
BC064804_1(BC064804|pid:none) Homo sapiens STE20-like kinase (ye... 36 2.3
AL732619_2(AL732619|pid:none) Mouse DNA sequence from clone RP23... 36 2.3
AE001439_74(AE001439|pid:none) Helicobacter pylori J99, complete... 36 2.3
BX530035_1(BX530035|pid:none) Zebrafish DNA sequence from clone ... 35 3.0
CP000227_676(CP000227|pid:none) Bacillus cereus Q1, complete gen... 35 3.0
(P50533) RecName: Full=Structural maintenance of chromosomes pro... 35 3.0
CP001186_595(CP001186|pid:none) Bacillus cereus G9842, complete ... 35 3.0
AM910996_673(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 3.0
(O67310) RecName: Full=UPF0169 lipoprotein aq_1273; Flags: Precu... 35 3.0
CP001102_1225(CP001102|pid:none) Candidatus Amoebophilus asiatic... 35 3.0
BC123995_1(BC123995|pid:none) Xenopus tropicalis hypothetical pr... 35 3.0
AE016877_583(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 35 3.0
BC067305_1(BC067305|pid:none) Xenopus tropicalis myosin heavy ch... 35 3.0
CP001177_692(CP001177|pid:none) Bacillus cereus AH187, complete ... 35 3.0
FM992689_722(FM992689|pid:none) Candida dubliniensis CD36 chromo... 35 3.0
BC166135_1(BC166135|pid:none) Xenopus tropicalis hypothetical pr... 35 3.0
AK137560_1(AK137560|pid:none) Mus musculus adult male bone cDNA,... 35 3.0
(Q14789) RecName: Full=Golgin subfamily B member 1; AltName: Ful... 35 3.9
AB009883_1(AB009883|pid:none) Nicotiana tabacum mRNA for KED, co... 35 3.9
AE001439_50(AE001439|pid:none) Helicobacter pylori J99, complete... 35 3.9
AE014186_259(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 3.9
AY958086_74(AY958086|pid:none) Zygnema circumcarinatum chloropla... 35 3.9
EF200540_2(EF200540|pid:none) Clover phyllody phytoplasma clone ... 35 3.9
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 3.9
AJ224982_1(AJ224982|pid:none) Arabidopsis thaliana MAP3K epsilon... 35 3.9
CP001078_2653(CP001078|pid:none) Clostridium botulinum E3 str. A... 35 3.9
CP001056_2911(CP001056|pid:none) Clostridium botulinum B str. Ek... 35 3.9
(Q09560) RecName: Full=Uncharacterized protein F36G3.1; &T21865... 35 3.9
AY445042_1(AY445042|pid:none) Streptococcus pyogenes SpyM6 mefA ... 35 3.9
CP000393_2217(CP000393|pid:none) Trichodesmium erythraeum IMS101... 35 3.9
AJ749874_1(AJ749874|pid:none) Borrelia garinii ospC gene for out... 35 3.9
(A8YUS3) RecName: Full=Trigger factor; Short=TF; &CP00... 35 3.9
CP001283_673(CP001283|pid:none) Bacillus cereus AH820, complete ... 35 3.9
AE016879_640(AE016879|pid:none) Bacillus anthracis str. Ames, co... 35 3.9
D25542_1(D25542|pid:none) Homo sapiens mRNA for golgi antigen gc... 35 3.9
CP000903_595(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 35 3.9
CP001634_186(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 35 3.9
DQ120669_1(DQ120669|pid:none) Homo sapiens rcCTAGE5 gene, partia... 35 3.9
AP000603_19(AP000603|pid:none) Arabidopsis thaliana genomic DNA,... 35 3.9
CP000123_804(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 5.1
AM999887_162(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 35 5.1
AE016879_639(AE016879|pid:none) Bacillus anthracis str. Ames, co... 35 5.1
EU621675_1(EU621675|pid:none) Xenopus laevis laryngeal-specific ... 35 5.1
(P43047) RecName: Full=Uncharacterized protein MCAP_0864; AltNam... 35 5.1
AM910993_465(AM910993|pid:none) Plasmodium knowlesi strain H chr... 35 5.1
AY579200_1(AY579200|pid:none) Tetrahymena thermophila condensin ... 35 5.1
CU207366_1064(CU207366|pid:none) Gramella forsetii KT0803 comple... 35 5.1
(Q97WH0) RecName: Full=DNA double-strand break repair rad50 ATPa... 35 5.1
CR380955_443(CR380955|pid:none) Candida glabrata strain CBS138 c... 35 5.1
AF337555_1(AF337555|pid:none) Candida albicans lysine/glutamic a... 34 6.6
CR382136_383(CR382136|pid:none) Debaryomyces hansenii strain CBS... 34 6.6
CP001186_594(CP001186|pid:none) Bacillus cereus G9842, complete ... 34 6.6
(P34250) RecName: Full=Uncharacterized protein YKL105C; &S37932... 34 6.6
FM992690_684(FM992690|pid:none) Candida dubliniensis CD36 chromo... 34 6.6
CP001083_1581(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 34 6.6
CP001283_672(CP001283|pid:none) Bacillus cereus AH820, complete ... 34 6.6
CP000867_992(CP000867|pid:none) Methanococcus maripaludis C6, co... 34 6.6
CP000001_582(CP000001|pid:none) Bacillus cereus E33L, complete g... 34 6.6
AM999887_1158(AM999887|pid:none) Wolbachia endosymbiont of Culex... 34 6.6
CP000419_1142(CP000419|pid:none) Streptococcus thermophilus LMD-... 34 6.6
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 34 6.6
AJ248288_48(AJ248288|pid:none) Pyrococcus abyssi complete genome... 34 6.6
AF112359_1(AF112359|pid:none) Schmidtea mediterranea clone M11 m... 34 6.6
AE016877_582(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 34 6.6
CP000227_675(CP000227|pid:none) Bacillus cereus Q1, complete gen... 34 6.6
CP000813_1476(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 34 6.6
AC007169_10(AC007169|pid:none) Arabidopsis thaliana chromosome 2... 34 6.6
CR380953_99(CR380953|pid:none) Candida glabrata strain CBS138 ch... 34 6.6
CR954202_634(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 34 6.6
AE017225_636(AE017225|pid:none) Bacillus anthracis str. Sterne, ... 34 6.6
AE017308_411(AE017308|pid:none) Mycoplasma mobile 163K complete ... 34 6.6
CP001176_620(CP001176|pid:none) Bacillus cereus B4264, complete ... 34 6.6
(O97237) RecName: Full=GRIP and coiled-coil domain-containing pr... 34 8.7
CP001471_41(CP001471|pid:none) Borrelia spielmanii A14S plasmid ... 34 8.7
CP001217_84(CP001217|pid:none) Helicobacter pylori P12, complete... 34 8.7
AJ830712_10(AJ830712|pid:none) Actinobacillus porcitonsillarum p... 34 8.7
BA000043_3321(BA000043|pid:none) Geobacillus kaustophilus HTA426... 34 8.7
CP001080_1627(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 34 8.7
(Q9Z221) RecName: Full=Polyamine-modulated factor 1-binding prot... 34 8.7
AY654590_8(AY654590|pid:none) Escherichia coli O59 O-antigen gen... 34 8.7
CP001173_69(CP001173|pid:none) Helicobacter pylori G27, complete... 34 8.7
AE014188_206(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 34 8.7
AJ830710_13(AJ830710|pid:none) Actinobacillus porcitonsillarum p... 34 8.7
AF306547_1(AF306547|pid:none) Arabidopsis thaliana SMC2-1 (SMC2)... 34 8.7

>AC116984_82(AC116984|pid:none) Dictyostelium discoideum chromosome
2 map 2567470-3108875 strain AX4, complete sequence.
Length = 180

Score = 318 bits (814), Expect = 2e-85
Identities = 165/177 (93%), Positives = 166/177 (93%)
Frame = +2

Query: 158 MYQFIKNLLPTKGNERKQQETKDAITETVEEAKQEVSSVEEMEFDLSLGINQTSGSLNKL 337
MYQFIKNLLPTKGNERKQQETKDAITETVEEAKQEVSSVEEMEFDLSLGINQTSGSLNKL
Sbjct: 1 MYQFIKNLLPTKGNERKQQETKDAITETVEEAKQEVSSVEEMEFDLSLGINQTSGSLNKL 60

Query: 338 EEEREKLFKTVSLIENQLKLLSETALNEHQQAXXXXXXXXXXXRVKPSVEKMDKEIDILT 517
EEEREKLFKTVSLIENQLK+LSETALNEHQQA RVKPSVEKMDKEIDILT
Sbjct: 61 EEEREKLFKTVSLIENQLKILSETALNEHQQAEKEKLEKMLKERVKPSVEKMDKEIDILT 120

Query: 518 KKLLDLYHKRDLLTQKKVYTEDSAEDATKINTPEQKEYIPFDTISKGSDDVVGSTTP 688
KKLLDLYHKRDLLTQKKVYTEDSAEDATKINTPEQKEYIPFDTISKGSDDVVGSTTP
Sbjct: 121 KKLLDLYHKRDLLTQKKVYTEDSAEDATKINTPEQKEYIPFDTISKGSDDVVGSTTP 177

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 939,470,297
Number of extensions: 13880714
Number of successful extensions: 52072
Number of sequences better than 10.0: 137
Number of HSP's gapped: 51282
Number of HSP's successfully gapped: 143
Length of query: 320
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 192
Effective length of database: 642,824,337
Effective search space: 123422272704
Effective search space used: 123422272704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.64 gvh: 0.43 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U04356-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 6
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0