Contig-U04339-1
Contig ID Contig-U04339-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04339-1 (Contig-U04339-1Q) /CSM_Contig/Contig-U04339-1Q.Seq.d
CAATAATTAATATGGAAAATTTTACAATTGATGCAGTTTCAAGTATTGAA
TTATTAAATAGGCAAAGTATTCACTTTTTAGAGGATCAAAATAATATAAA
GGATATTACAGAATGTTTACCAAAGAAATATCAAGAATTTTTTAAAGGTT
TCTTTTATACTCAATTGTTTACAGTGAATGCGGTTAAATTGATGTTATCA
ATTCAAGAACGTCATAAAACTAGTATTAGAACATTGGAGAAATTGGAATC
ATTGATTTTAATGGAAGAGAAATCAAAAGAGGTATTAATTGAATACCAAA
AGATGGCAAAGAAAGATAATACAAAAGTCGATATGAGTTCAATTAAAAAA
CAACTTCGTGATTCTGAAGTTCAAATTAATGAATTAAAAGAATCAAAAAG
GAAATTAGAGATGGAAGCATTGGCAACTAGTCCAAGTAAAGCCAATCTTA
GTGGTGGAGGTATCTCTTCGTTATGGGGTGGTCTCTCTTCGATTTCAGAG
TTACGTAAAAAGAAATTAGAGTTTGGTCATCGTAGAAGTCGTTCTGTAAC
CGATCAAGTTGAAAAGAATATTCTAAAGAAATCAATTAAACCTGGTTTTT
CTTTATTTGATTTTGGTTCTTCAAAATCAAATAATAGTTTAAATAGTTCT
TCAAATAATTTACAAACAGCTTTAAATAATAATAACAACAATACAAAAAC
TTCACCTCCAATTCAAATATCTAAACAAAATAGTTCAAATAGTTCAAATA
GTTTAAATAGTTTAGAAGTTAGTAGTAGTGGTGGTGAAAGTGTATCACCA
AAAAATTATTTATCTTGTGTTGGTAATTCAATGCCATCAACTCCATTAAA
TGGTATGTCCCCAATATCTTCTCCAATATTATCTCCACAACCTAATAATA
CTTCAAGTACAAATAGTCCAAGATCTTAAAAAAAAAATAAATAAAAAAAA
AAAATAAAAAAATAAAAAAACAATATCACCATAAGTAAAA

Gap no gap
Contig length 990
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3731241
End point 3730251
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U04339
List of clone(s)

est1=SSA232F,1,356
est2=SSF807Z,315,991
est3=SSA232Z,579,991
Translated Amino Acid sequence
IINMENFTIDAVSSIELLNRQSIHFLEDQNNIKDITECLPKKYQEFFKGFFYTQLFTVNA
VKLMLSIQERHKTSIRTLEKLESLILMEEKSKEVLIEYQKMAKKDNTKVDMSSIKKQLRD
SEVQINELKESKRKLEMEALATSPSKANLSGGGISSLWGGLSSISELRKKKLEFGHRRSR
SVTDQVEKNILKKSIKPGFSLFDFGSSKSNNSLNSSSNNLQTALNNNNNNTKTSPPIQIS
KQNSSNSSNSLNSLEVSSSGGESVSPKNYLSCVGNSMPSTPLNGMSPISSPILSPQPNNT
SSTNSPRS*kknk*kkkikk*knnitisk


Translated Amino Acid sequence (All Frames)
Frame A:
q*liwkilqlmqfqvlny*igkvftf*rikii*rilqnvyqrniknflkvsfilnclq*m
rln*cyqfknviklvlehwrnwnh*f*wkrnqkry*lntkrwqrkiiqksi*vqlknnfv
ilkfklmn*knqkgn*rwkhwqlvqvkpilvvevslrygvvslrfqsyvkrn*slvivev
vl*piklkrif*rnqlnlvflylilvlqnqiiv*ivlqiiykql*iiittiqklhlqfky
lnkivqivqiv*iv*klvvvvvkvyhqkiiylvlviqchqlh*mvcpqyllqyylhnlii
lqvqivqdlkkkinkkkk*knkktisp*vk


Frame B:
nn*ygkfyn*csfky*iik*akyslfrgsk*ykgyyrmftkeisrif*rfllysivysec
g*idvinsrts*n*y*nigeigiidfngreikrgin*ipkdgker*yksryefn*ktts*
f*ssn**ikrikkeirdgsign*sk*sqs*wwrylfvmgwslfdfrvt*keirvwss*ks
fcnrss*keyskein*twfffi*fwffkik**fk*ffk*ftnsfk***qqyknftsnsni
*tk*fk*fk*fk*frs***ww*kcitkklfilcw*fnainsikwyvpnifsniistt**y
fkyk*skilkkk*ikkknkkikkqyhhk*


Frame C:
IINMENFTIDAVSSIELLNRQSIHFLEDQNNIKDITECLPKKYQEFFKGFFYTQLFTVNA
VKLMLSIQERHKTSIRTLEKLESLILMEEKSKEVLIEYQKMAKKDNTKVDMSSIKKQLRD
SEVQINELKESKRKLEMEALATSPSKANLSGGGISSLWGGLSSISELRKKKLEFGHRRSR
SVTDQVEKNILKKSIKPGFSLFDFGSSKSNNSLNSSSNNLQTALNNNNNNTKTSPPIQIS
KQNSSNSSNSLNSLEVSSSGGESVSPKNYLSCVGNSMPSTPLNGMSPISSPILSPQPNNT
SSTNSPRS*kknk*kkkikk*knnitisk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04339-1 (Contig-U04339-1Q)
/CSM_Contig/Contig-U04339-1Q.Seq.d
(990 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04339-1 (Contig-U04339-1Q) /CSM_Contig/Conti... 1838 0.0
Contig-U10219-1 (Contig-U10219-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12148-1 (Contig-U12148-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U06778-1 (Contig-U06778-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U01084-1 (Contig-U01084-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U14293-1 (Contig-U14293-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U13409-1 (Contig-U13409-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12541-1 (Contig-U12541-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12492-1 (Contig-U12492-1Q) /CSM_Contig/Conti... 38 0.018

>Contig-U04339-1 (Contig-U04339-1Q) /CSM_Contig/Contig-U04339-1Q.Seq.d
Length = 990

Score = 1838 bits (927), Expect = 0.0
Identities = 927/927 (100%)
Strand = Plus / Plus


Query: 1 caataattaatatggaaaattttacaattgatgcagtttcaagtattgaattattaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caataattaatatggaaaattttacaattgatgcagtttcaagtattgaattattaaata 60


Query: 61 ggcaaagtattcactttttagaggatcaaaataatataaaggatattacagaatgtttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcaaagtattcactttttagaggatcaaaataatataaaggatattacagaatgtttac 120


Query: 121 caaagaaatatcaagaattttttaaaggtttcttttatactcaattgtttacagtgaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaagaaatatcaagaattttttaaaggtttcttttatactcaattgtttacagtgaatg 180


Query: 181 cggttaaattgatgttatcaattcaagaacgtcataaaactagtattagaacattggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cggttaaattgatgttatcaattcaagaacgtcataaaactagtattagaacattggaga 240


Query: 241 aattggaatcattgattttaatggaagagaaatcaaaagaggtattaattgaataccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattggaatcattgattttaatggaagagaaatcaaaagaggtattaattgaataccaaa 300


Query: 301 agatggcaaagaaagataatacaaaagtcgatatgagttcaattaaaaaacaacttcgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agatggcaaagaaagataatacaaaagtcgatatgagttcaattaaaaaacaacttcgtg 360


Query: 361 attctgaagttcaaattaatgaattaaaagaatcaaaaaggaaattagagatggaagcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attctgaagttcaaattaatgaattaaaagaatcaaaaaggaaattagagatggaagcat 420


Query: 421 tggcaactagtccaagtaaagccaatcttagtggtggaggtatctcttcgttatggggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggcaactagtccaagtaaagccaatcttagtggtggaggtatctcttcgttatggggtg 480


Query: 481 gtctctcttcgatttcagagttacgtaaaaagaaattagagtttggtcatcgtagaagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtctctcttcgatttcagagttacgtaaaaagaaattagagtttggtcatcgtagaagtc 540


Query: 541 gttctgtaaccgatcaagttgaaaagaatattctaaagaaatcaattaaacctggttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttctgtaaccgatcaagttgaaaagaatattctaaagaaatcaattaaacctggttttt 600


Query: 601 ctttatttgattttggttcttcaaaatcaaataatagtttaaatagttcttcaaataatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctttatttgattttggttcttcaaaatcaaataatagtttaaatagttcttcaaataatt 660


Query: 661 tacaaacagctttaaataataataacaacaatacaaaaacttcacctccaattcaaatat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tacaaacagctttaaataataataacaacaatacaaaaacttcacctccaattcaaatat 720


Query: 721 ctaaacaaaatagttcaaatagttcaaatagtttaaatagtttagaagttagtagtagtg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctaaacaaaatagttcaaatagttcaaatagtttaaatagtttagaagttagtagtagtg 780


Query: 781 gtggtgaaagtgtatcaccaaaaaattatttatcttgtgttggtaattcaatgccatcaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gtggtgaaagtgtatcaccaaaaaattatttatcttgtgttggtaattcaatgccatcaa 840


Query: 841 ctccattaaatggtatgtccccaatatcttctccaatattatctccacaacctaataata 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctccattaaatggtatgtccccaatatcttctccaatattatctccacaacctaataata 900


Query: 901 cttcaagtacaaatagtccaagatctt 927
|||||||||||||||||||||||||||
Sbjct: 901 cttcaagtacaaatagtccaagatctt 927


Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 971 caatatcaccataagtaaaa 990
||||||||||||||||||||
Sbjct: 971 caatatcaccataagtaaaa 990


>Contig-U10219-1 (Contig-U10219-1Q) /CSM_Contig/Contig-U10219-1Q.Seq.d
Length = 1355

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 675 aataataataacaacaatacaaaaa 699
|||||||||||||||||| ||||||
Sbjct: 1249 aataataataacaacaattcaaaaa 1273


Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 675 aataataataacaacaata 693
|||||||||||||| ||||
Sbjct: 277 aataataataacaataata 295


>Contig-U12148-1 (Contig-U12148-1Q) /CSM_Contig/Contig-U12148-1Q.Seq.d
Length = 1514

Score = 40.1 bits (20), Expect = 0.004
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 675 aataataataacaacaatacaaaa 698
||||||||||||||||| ||||||
Sbjct: 767 aataataataacaacaacacaaaa 790


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,109
Number of Sequences: 6905
Number of extensions: 31109
Number of successful extensions: 3765
Number of sequences better than 10.0: 591
length of query: 990
length of database: 5,674,871
effective HSP length: 16
effective length of query: 974
effective length of database: 5,564,391
effective search space: 5419716834
effective search space used: 5419716834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.16
Homology vs DNA
Query= Contig-U04339-1 (Contig-U04339-1Q) /CSM_Contig/Contig-U04339-1Q.Seq.d
(990 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92666) Dictyostelium discoideum slug cDNA, clone SSF807. 1209 0.0 1
(C25594) Dictyostelium discoideum slug cDNA, clone SSA232. 624 e-174 1
(AU075094) Dictyostelium discoideum slug cDNA, clone SSA232. 476 e-130 1
(EI947327) akm3bj20f Km3-3010m-Ionian Sea marine metagenome ... 58 2e-07 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 5e-04 13
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 42 5e-04 19
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.001 15
(AC115579) Dictyostelium discoideum chromosome 2 map 6097680... 38 0.002 5
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.006 11
(EL815196) CBWN1511.g1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 38 0.009 2
(CP000025) Campylobacter jejuni RM1221, complete genome. 36 0.014 20
(AJ000992) Dictyostelium discoideum gdt1 gene. 34 0.017 6
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.025 21
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 40 0.038 8
(CP000727) Clostridium botulinum A str. Hall, complete genome. 42 0.040 19
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 52 0.042 1
(AX392737) Sequence 27 from Patent WO0212526. 52 0.042 1
(AR707084) Sequence 27 from patent US 6933145. 52 0.042 1
(AC084368) Homo sapiens BAC clone RP11-440E5 from 7, complet... 52 0.042 1
(EK196792) 1095460041327 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.042 2
(CR974425) Zebrafish DNA sequence from clone CH73-189A7 in l... 38 0.042 6
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 42 0.055 19
(BX323067) Zebrafish DNA sequence from clone CH211-277B21 in... 38 0.056 11
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 42 0.058 17
(AC090510) Homo sapiens chromosome 15 clone CTD-2036P10 map ... 46 0.063 4
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 40 0.092 10
(AJ279060) Dictyostelium discoideum gdt1 gene for hypothetic... 34 0.11 5
(AX344507) Sequence 354 from Patent WO0200926. 38 0.15 6
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 38 0.15 19
(CU972448) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.15 6
(AC134297) Rattus norvegicus clone CH230-6J16, WORKING DRAFT... 50 0.16 1
(AC095248) Rattus norvegicus clone CH230-10C8, *** SEQUENCIN... 50 0.16 1
(ER299216) 1092343671772 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.16 1
(CZ159751) OO__Ba0004H11.f OO__Ba Oryza officinalis genomic ... 50 0.16 1
(EL924898) NY4Th2_140_H05.b1_A039 NY4 theronts Ichthyophthir... 50 0.16 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.17 12
(CP000728) Clostridium botulinum F str. Langeland, complete ... 34 0.21 19
(CU137661) Medicago truncatula chromosome 5 clone mth4-96g16... 34 0.22 10
(AY686477) Mus musculus strain 129S6/SvEvTac chromosome 6 cl... 38 0.22 5
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 42 0.27 11
(AL049656) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 38 0.29 5
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 40 0.31 18
(AC176341) Strongylocentrotus purpuratus clone R3-3053P11, W... 34 0.35 8
(AC180938) Strongylocentrotus purpuratus clone R3-3061L15, W... 38 0.37 2
(AC164234) Bos taurus clone CH240-150D3, *** SEQUENCING IN P... 36 0.37 9
(CU469313) Zebrafish DNA sequence from clone CH73-90N13 in l... 38 0.37 2
(AC102363) Mus musculus chromosome 1, clone RP23-76B18, comp... 38 0.38 7
(DY886937) CeleSEQ2773 Cunninghamella elegans pBluescript (E... 36 0.39 3
(AM680760) Entamoeba terrapinae GSS, clone terra179h12.p1k. 44 0.44 2
(BB974883) Plasmodium berghei str. ANKA cDNA clone: OK004699... 38 0.48 2
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 36 0.49 11
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 34 0.51 20
(EL503067) F04_PFLAB1-LARGE-PLATE12B.AB1 Blood stage Plasmod... 40 0.52 2
(BX469900) Zebrafish DNA sequence from clone CH211-280H1 in ... 48 0.53 3
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 32 0.55 22
(CR931781) Zebrafish DNA sequence from clone DKEYP-71H2 in l... 38 0.56 3
(CR974476) Mouse DNA sequence from clone RP24-469J5 on chrom... 44 0.58 4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.60 18
(AC171608) Bos taurus clone CH240-268G2, WORKING DRAFT SEQUE... 40 0.61 4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.65 13
(AL805945) Zebrafish DNA sequence from clone CH211-195M7. 48 0.65 1
(AL935320) Mouse DNA sequence from clone RP23-275N21 on chro... 48 0.65 1
(AL845468) Mouse DNA sequence from clone RP23-67E6 on chromo... 48 0.65 1
(AC084161) Caenorhabditis elegans cosmid Y92H12A, complete s... 48 0.65 1
(AC153122) Gasterosteus aculeatus clone uogacrs-7b8-1, WORKI... 48 0.65 1
(AC123371) Rattus norvegicus clone CH230-40D4, *** SEQUENCIN... 48 0.65 1
(AC117304) Rattus norvegicus clone CH230-244O18, *** SEQUENC... 48 0.65 1
(AC101217) Mus musculus clone RP23-182P24, LOW-PASS SEQUENCE... 48 0.65 1
(AC096078) Rattus norvegicus clone CH230-33J21, *** SEQUENCI... 48 0.65 1
(CR753898) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.65 1
(CR318634) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 48 0.65 1
(AC219828) Bos taurus clone CH240-320P18, WORKING DRAFT SEQU... 48 0.65 1
(AC006910) Caenorhabditis elegans clone Y92H12, *** SEQUENCI... 48 0.65 1
(EI895273) VUH1-77M2TV VUUBBa (VUH1) Vigna unguiculata genom... 48 0.65 1
(CU235474) Equus caballus GSS, BAC clone CH241-376N15, SP6 e... 48 0.65 1
(CL025418) CH216-21J22_Sp6.1 CH216 Xenopus (Silurana) tropic... 48 0.65 1
(ES832924) UFL_394_92 Cotton fiber 0-10 day post anthesis Go... 48 0.65 1
(AC154671) Mus musculus BAC clone RP24-294I15 from 14, compl... 34 0.65 7
(EJ398801) 1093012021389 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.69 2
(AE015927) Clostridium tetani E88, complete genome. 34 0.76 24
(AC189399) Brassica rapa subsp. pekinensis clone KBrB056I08,... 34 0.77 7
(AC171063) Macaca mulatta clone CH250-360B11, WORKING DRAFT ... 40 0.85 5
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 32 0.86 11
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 36 0.91 11
(AM422018) Candidatus Phytoplasma australiense complete genome. 32 0.96 17
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 32 1.1 10
(AC149916) Strongylocentrotus purpuratus clone R3-14A1, WORK... 38 1.1 7
(AC149983) Strongylocentrotus purpuratus clone R3-32A5, WORK... 36 1.1 5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 1.1 10
(AC172108) Macaca mulatta clone CH250-275F21, *** SEQUENCING... 40 1.2 5
(AC122834) Mus musculus BAC clone RP23-183H9 from 15, comple... 36 1.2 6
(AC180257) Strongylocentrotus purpuratus clone R3-3008J14, W... 36 1.2 5
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 1.3 6
(CR848055) Zebrafish DNA sequence from clone DKEY-151J13 in ... 34 1.3 2
(AC076959) Homo sapiens chromosome 3 clone RP11-922L8, WORKI... 36 1.3 2
(CU929428) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.4 2
(AC091768) Homo sapiens BAC clone RP11-703N5 from 7, complet... 36 1.4 2
(CR407544) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 34 1.4 8
(AL844506) Plasmodium falciparum chromosome 7. 38 1.4 13
(AC020595) Homo sapiens BAC clone RP11-358M9 from 2, complet... 42 1.5 5
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple... 38 1.5 19
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 36 1.5 19
(AC179061) Strongylocentrotus purpuratus clone R3-4005N21, W... 38 1.5 5
(AE001414) Plasmodium falciparum 3D7 chromosome 2 section 51... 34 1.5 2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 34 1.6 23
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 34 1.7 21
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 1.7 17
(BB639165) Mus musculus 3 days neonate thymus cDNA, RIKEN fu... 36 1.8 2
(BI814738) PfESToaa05f12.y1 Plasmodium falciparum 3D7 asexua... 34 1.8 2
(CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 1.9 7
(BX890623) Mouse DNA sequence from clone RP23-83O23 on chrom... 44 1.9 4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 2.0 12
(EJ902849) 1093018497326 Global-Ocean-Sampling_GS-30-02-01-1... 36 2.2 2
(BQ596847) PfESToab23d02.y1 Plasmodium falciparum 3D7 asexua... 36 2.2 2
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423... 34 2.2 6
(EJ875680) 1093018368398 Global-Ocean-Sampling_GS-30-02-01-1... 36 2.2 2
(BX908797) Zebrafish DNA sequence from clone DKEY-43P13 in l... 42 2.2 8
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 2.2 11
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 2.3 6
(BH147480) ENTQQ33TF Entamoeba histolytica Sheared DNA Entam... 42 2.3 2
(BX248388) Zebrafish DNA sequence from clone CH211-239E16 in... 38 2.5 4
(CT791240) Paramecium tetraurelia 5-PRIME EST from clone LK0... 38 2.5 2
(EF081029) Triticum urartu clone BAC 292N12 genomic sequence. 46 2.6 1
(AM464453) Vitis vinifera contig VV78X268560.2, whole genome... 46 2.6 1
(AM435076) Vitis vinifera contig VV78X044913.6, whole genome... 46 2.6 1
(DD010736) Diagnosis of known genetic Parameters within the ... 46 2.6 1
(CS467909) Sequence 73 from Patent WO2006004597. 46 2.6 1
(AX346874) Sequence 1945 from Patent WO0200928. 46 2.6 1
(AX344566) Sequence 17 from Patent WO0200932. 46 2.6 1
(X66450) E.octocarinatus RPA1 gene for RNA polymerase I larg... 46 2.6 1
(AL353744) Human DNA sequence from clone RP13-100A9 on chrom... 46 2.6 1
(AL035593) Human DNA sequence from clone RP1-310J6 on chromo... 46 2.6 1
(AC068727) Homo sapiens chromosome 15 clone RP11-90M11 map 1... 46 2.6 1
(AC064878) Homo sapiens chromosome 6 clone RP11-13I13, compl... 46 2.6 1
(AC003986) Homo sapiens BAC clone CTA-370M10 from 7, complet... 46 2.6 1
(AC153104) Felis catus clone RP86-524P9, WORKING DRAFT SEQUE... 46 2.6 1
(AC123270) Rattus norvegicus clone CH230-334A23, *** SEQUENC... 46 2.6 1
(AC107583) Rattus norvegicus clone CH230-150B10, *** SEQUENC... 46 2.6 1
(AC106723) Homo sapiens chromosome 12 clone RP11-166C15, WOR... 46 2.6 1
(AC106283) Rattus norvegicus clone CH230-65J24, *** SEQUENCI... 46 2.6 1
(AC098225) Rattus norvegicus clone CH230-39B11, *** SEQUENCI... 46 2.6 1
(AC225265) Macaca fuscata clone CH270-161F3, WORKING DRAFT S... 46 2.6 1
(AC222549) Papio anubis clone RP41-456B1, WORKING DRAFT SEQU... 46 2.6 1
(AC217750) Colobus guereza clone CH272-24D12, WORKING DRAFT ... 46 2.6 1
(AC211096) Equus caballus clone CH241-514O20, WORKING DRAFT ... 46 2.6 1
(AC211095) Equus caballus clone CH241-453F6, WORKING DRAFT S... 46 2.6 1
(AC197602) Zea mays chromosome 2 clone CH201-236F9; ZMMBBc02... 46 2.6 1
(AC196784) Gallus gallus chromosome 22 clone CH261-108E18, *... 46 2.6 1
(AC194789) Pan troglodytes chromosome X clone CH251-611B2, W... 46 2.6 1
(AC191627) Zea mays chromosome 2 clone CH201-122P7; ZMMBBc01... 46 2.6 1
(AC184346) Strongylocentrotus purpuratus clone R3-45N2, WORK... 46 2.6 1
(AC179084) Strongylocentrotus purpuratus clone R3-4009J08, W... 46 2.6 1
(AQ203669) HS_3095_B2_E04_T7 CIT Approved Human Genomic Sper... 46 2.6 1
(AQ102211) HS_3035_A1_H10_MF CIT Approved Human Genomic Sper... 46 2.6 1
(EF860339) Mus musculus C57BL/6N IST11934D6HMF1 gene trap em... 46 2.6 1
(DH761517) Rattus norvegicus DNA, BAC clone: RNB1-343C18, 5'... 46 2.6 1
(CU129010) Equus caballus GSS, BAC clone CH241-248N20, SP6 e... 46 2.6 1
(CD038602) UTPPI009_F07 USDA-Tifton Peanut Immature Pod cDNA... 46 2.6 1
(GO176945) CAGA5039.fwd CAGA Alvinella pompejana Normalized ... 46 2.6 1
(GO175568) CAGA46216.fwd CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO175567) CAGA46216.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO174169) CAGA45558.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO151139) CAGA34694.fwd CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO151138) CAGA34694.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO149939) CAGA34125.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO141828) CAGA29606.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO133295) CAGA25598.fwd CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO133294) CAGA25598.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO132074) CAGA25015.fwd CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO117709) CAGA18166.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO117676) CAGA18149.fwd CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO117675) CAGA18149.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(GO116108) CAGA17350.rev CAGA Alvinella pompejana Normalized... 46 2.6 1
(FF432605) G142P60150RG10.T0 Acorn worm juvenile pCMVSport6 ... 46 2.6 1
(FD370212) CBPN47257.b1 CBPN: Subtracted channel catfish cDN... 46 2.6 1
(FD341404) CBPN22165.b1 CBPN: Subtracted channel catfish cDN... 46 2.6 1
(FD330002) CBPN15354.b1 CBPN: Subtracted channel catfish cDN... 46 2.6 1
(FD279263) CBFA23522.b1 CBFA: Normalized cDNA library made f... 46 2.6 1
(FD119705) CBZB1934.b1 CBZB: Normalized channel catfish cDNA... 46 2.6 1
(FD065826) CBPO9397.b1 CBPO: Normalized channel catfish cDNA... 46 2.6 1
(FD054323) CBPO3016.b1 CBPO: Normalized channel catfish cDNA... 46 2.6 1
(FD047670) CBPO17574.b1 CBPO: Normalized channel catfish cDN... 46 2.6 1
(FD043857) CBPO12522.b1 CBPO: Normalized channel catfish cDN... 46 2.6 1
(FD026119) CBCZ1178.b1 CBCZ: cDNA library made from Channel ... 46 2.6 1
(ES761494) ISBL_9_F07_E003.g1 USDA-Tifton Peanut Library ISB... 46 2.6 1
(GC697965) Sequence 13210 from patent US 6812339. 42 2.6 5
(AL132988) Human chromosome 14 DNA sequence BAC R-320M16 of ... 38 2.6 5
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 38 2.6 7
(AC024519) Homo sapiens chromosome 13 clone RP11-170D1 map 1... 30 2.7 10
(AL954831) Zebrafish DNA sequence from clone DKEY-12H9 in li... 44 2.7 5
(AC135288) Solanum demissum chromosome 5 BAC PGEC219 genomic... 36 2.8 7
(AC010176) Homo sapiens 12 BAC RP11-711K1 (Roswell Park Canc... 36 2.8 7
(AC214072) MACACA MULATTA BAC clone CH250-123M13 from chromo... 38 2.8 4
(AC093285) Homo sapiens chromosome 5 clone RP11-454P18, WORK... 40 2.8 3
(BQ938970) AGENCOURT_8926877 NCI_CGAP_Co24 Mus musculus cDNA... 42 3.0 2
(AC216544) Populus trichocarpa clone POP016-D10, complete se... 38 3.0 6
(AC180715) Strongylocentrotus purpuratus clone R3-3085G16, W... 38 3.0 6
(BX072573) Zebrafish DNA sequence from clone DKEY-16I6. 38 3.2 7
(AC151388) Callithrix jacchus clone CH259-59J18, WORKING DRA... 34 3.3 6
(AC157351) Mus musculus chromosome 5, clone RP23-219K16, com... 34 3.4 8
(BM167290) EST569813 PyBS Plasmodium yoelii yoelii cDNA clon... 32 3.6 3
(AP010874) Lotus japonicus genomic DNA, clone: LjB14J02, BM2... 38 3.7 4
(AC213417) Populus trichocarpa clone POP018-J23, complete se... 32 4.0 7
(AX344572) Sequence 23 from Patent WO0200932. 36 4.1 6
(AC099308) Drosophila melanogaster clone BACR11M14, complete... 38 4.1 7
(BZ121346) CH230-411N23.TJ CHORI-230 Segment 2 Rattus norveg... 34 4.2 3
(AM454286) Vitis vinifera contig VV78X088078.7, whole genome... 38 4.3 2
(DC232051) Plasmodium berghei strain ANKA cDNA clone:SG02367... 36 4.6 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 4.7 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 4.8 20
(BX005364) Zebrafish DNA sequence from clone DKEY-222L20 in ... 34 4.9 2
(BX640470) Zebrafish DNA sequence from clone CH211-205H10 in... 34 4.9 2
(EY331235) CAWY404.fwd CAWY Helobdella robusta Subtracted Ea... 34 5.0 2
(AC180402) Strongylocentrotus purpuratus clone R3-3110L17, W... 34 5.0 8
(AC009992) Arabidopsis thaliana chromosome III BAC T4P3 geno... 32 5.0 2
(AR777048) Sequence 203 from patent US 6972197. 32 5.0 2
(CU463279) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 5.0 6
(CR933737) Zebrafish DNA sequence from clone DKEY-35B9 in li... 34 5.1 2
(AL049797) Human DNA sequence from clone RP4-661G12 on chrom... 36 5.2 7
(AC160555) Mus musculus chromosome 5, clone RP23-387L12, com... 38 5.2 5
(BX248402) Zebrafish DNA sequence from clone CH211-226P14 in... 42 5.2 5
(FP016249) Zebrafish DNA sequence from clone CH73-248C21 in ... 42 5.2 4
(AL845456) Mouse DNA sequence from clone RP23-90C6 on chromo... 44 5.3 3
(DD000812) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH... 32 5.3 2
(AX059497) Sequence 230 from Patent WO0055325. 32 5.3 2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 5.4 11
(AP010345) Lotus japonicus genomic DNA, chromosome 2, clone:... 40 5.4 3
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 32 5.4 11
(BM275729) PfESToaa56g03.y1 Plasmodium falciparum 3D7 gameto... 34 5.5 2
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 36 5.6 21
(AM443089) Vitis vinifera contig VV78X230441.2, whole genome... 34 5.6 2
(AC099321) Danio rerio clone 35K4, complete sequence. 30 5.6 7
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d... 32 5.6 2
(AC123894) Rattus norvegicus clone CH230-43C21, *** SEQUENCI... 40 5.9 5
(AC196916) Dasypus novemcinctus clone VMRC5-194A12, WORKING ... 34 6.1 7
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 30 6.2 7
(BJ422876) Dictyostelium discoideum cDNA clone:ddv47f11, 5' ... 38 6.2 2
(AC168377) Strongylocentrotus purpuratus clone R3-4013G18, W... 34 6.2 7
(AC206545) Pongo abelii BAC clone CH276-487H8 from chromosom... 42 6.3 5
(FB571321) Sequence 188 from Patent EP1865317. 34 6.3 6
(AC214598) Populus trichocarpa clone POP052-F04, complete se... 38 6.3 8
(AG041233) Pan troglodytes DNA, clone: PTB-018O03.F. 42 6.4 2
(BX548174) Prochlorococcus marinus MED4 complete genome. 40 6.4 19
(BU767726) SJEBCC03 SJE Schistosoma japonicum cDNA, mRNA seq... 34 6.6 2
(AL844507) Plasmodium falciparum chromosome 8. 38 6.6 14
(DX461963) Cpl03681 Papaya Genomic DNA BAC Library Carica pa... 34 6.6 2
(CT549007) A BAC library has been constructed from cultivar ... 32 6.6 2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 6.7 14
(CR376851) Zebrafish DNA sequence from clone DKEY-48N5 in li... 38 6.7 2
(AC180092) Strongylocentrotus purpuratus clone R3-4007M3, WO... 38 6.9 4
(CR628406) Zebrafish DNA sequence from clone CH211-146A2 in ... 38 7.0 4
(EF505887) Uncultured endophytic fungus clone 57-11-04 18S r... 38 7.0 2
(EF505671) Uncultured endophytic fungus clone 33-6-72 18S ri... 38 7.0 2
(AC165186) Saimiri boliviensis boliviensis clone CH254-282K1... 42 7.1 3
(CU694381) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 7.3 7
(AC131892) Atelerix albiventris clone LB4-341P7, WORKING DRA... 40 7.3 5
(CK528416) rswfa0_007218.y1 swf Bombyx mori cDNA, mRNA seque... 32 7.5 3
(AP005672) Physcomitrella patens subsp. patens chloroplast D... 42 7.5 7
(EJ282796) 1095368001257 Global-Ocean-Sampling_GS-27-01-01-1... 38 7.6 2
(CR388039) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 7.6 7
(ED005521) MUGQ_CH252P089C15T7_CP112_062 CHORI-252 Vervet Mo... 36 7.7 2
(BX571796) Zebrafish DNA sequence from clone DKEY-180P18 in ... 38 7.9 6
(DE932303) Macropus eugenii DNA, BAC clone: MEB1-123J24_F, 5... 42 8.0 2
(CR788287) Mouse DNA sequence from clone RP23-362B9 on chrom... 44 8.0 3
(CU695304) Brassica rapa subsp. pekinensis clone KBrH056E23,... 32 8.2 7
(AC168379) Strongylocentrotus purpuratus clone R3-4013F5, WO... 36 8.7 7
(CP000033) Lactobacillus acidophilus NCFM, complete genome. 36 8.7 19
(CT774055) Paramecium tetraurelia 5-PRIME EST from clone LK0... 38 8.7 2
(AC203552) Medicago truncatula clone mth2-171k22, complete s... 34 8.8 7
(X17485) Plasmodium falciparum mRNA for asparagine-rich anti... 36 8.8 2
(AL929176) Zebrafish DNA sequence from clone XX-187G17 in li... 40 8.8 6
(AL954149) Zebrafish DNA sequence from clone CH211-146G19 in... 38 9.0 5
(AU073540) Dictyostelium discoideum slug cDNA, clone SSH493. 38 9.1 2
(AY552098) Homo sapiens phospholipase A2, group IVA (cytosol... 36 9.2 7
(FC751298) CBBI5664.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 32 9.6 3
(CU856197) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.7 5
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 38 9.8 21
(CR391934) Zebrafish DNA sequence from clone DKEY-279E7 in l... 36 9.9 6

>(C92666) Dictyostelium discoideum slug cDNA, clone SSF807.
Length = 677

Score = 1209 bits (610), Expect = 0.0
Identities = 612/613 (99%)
Strand = Plus / Plus


Query: 315 gataatacaaaagtcgatatgagttcaattaaaaaacaacttcgtgattctgaagttcaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gataatacaaaagtcgatatgagttcaattaaaaaacaacttcgtgattctgaagttcaa 60


Query: 375 attaatgaattaaaagaatcaaaaaggaaattagagatggaagcattggcaactagtcca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaatgaattaaaagaatcaaaaaggaaattagagatggaagcattggcaactagtcca 120


Query: 435 agtaaagccaatcttagtggtggaggtatctcttcgttatggggtggtctctcttcgatt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtaaagccaatcttagtggtggaggtatctcttcgttatggggtggtctctcttcgatt 180


Query: 495 tcagagttacgtaaaaagaaattagagtttggtcatcgtagaagtcgttctgtaaccgat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcagagttacgtaaaaagaaattagagtttggtcatcgtagaagtcgttctgtaaccgat 240


Query: 555 caagttgaaaagaatattctaaagaaatcaattaaacctggtttttctttatttgatttt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagttgaaaagaatattctaaagaaatcaattaaacctggtttttctttatttgatttt 300


Query: 615 ggttcttcaaaatcaaataatagtttaaatagttcttcaaataatttacaaacagcttta 674
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggttcttcaaaatcanataatagtttaaatagttcttcaaataatttacaaacagcttta 360


Query: 675 aataataataacaacaatacaaaaacttcacctccaattcaaatatctaaacaaaatagt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aataataataacaacaatacaaaaacttcacctccaattcaaatatctaaacaaaatagt 420


Query: 735 tcaaatagttcaaatagtttaaatagtttagaagttagtagtagtggtggtgaaagtgta 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaaatagttcaaatagtttaaatagtttagaagttagtagtagtggtggtgaaagtgta 480


Query: 795 tcaccaaaaaattatttatcttgtgttggtaattcaatgccatcaactccattaaatggt 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcaccaaaaaattatttatcttgtgttggtaattcaatgccatcaactccattaaatggt 540


Query: 855 atgtccccaatatcttctccaatattatctccacaacctaataatacttcaagtacaaat 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgtccccaatatcttctccaatattatctccacaacctaataatacttcaagtacaaat 600


Query: 915 agtccaagatctt 927
|||||||||||||
Sbjct: 601 agtccaagatctt 613

Score = 48.1 bits (24), Expect(2) = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 728 aaatagttcaaatagttcaaatagttta 755
||||||||||||||||| ||||||||||
Sbjct: 423 aaatagttcaaatagtttaaatagttta 450

Score = 40.1 bits (20), Expect(2) = 1e-05
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 971 caatatcaccataagtaaaa 990
||||||||||||||||||||
Sbjct: 657 caatatcaccataagtaaaa 676

Score = 48.1 bits (24), Expect = 0.65
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 737 aaatagttcaaatagtttaaatagttta 764
||||||||||||||||| ||||||||||
Sbjct: 414 aaatagttcaaatagttcaaatagttta 441

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,439,438,842
Number of extensions: 94830950
Number of successful extensions: 8345365
Number of sequences better than 10.0: 280
Length of query: 990
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 966
Effective length of database: 99,340,224,878
Effective search space: 95962657232148
Effective search space used: 95962657232148
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04339-1 (Contig-U04339-1Q) /CSM_Contig/Contig-U04339-1Q.Seq.d
(990 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP000575_1197(CP000575|pid:none) Staphylothermus marinus F1, com... 44 0.007
S07537(S07537;S10449)myosin heavy chain, smooth muscle, splice f... 42 0.033
X16261_1(X16261|pid:none) Rat mRNA for alternatively spliced smo... 42 0.033
S10450(S10450;S07827) myosin heavy chain, smooth muscle, splice ... 42 0.033
BC026142_1(BC026142|pid:none) Mus musculus myosin, heavy polypep... 41 0.056
A60234(A60234;S14595;A60230) IgA Fc receptor precursor - Strepto... 41 0.073
AB121739_1(AB121739|pid:none) Streptococcus agalactiae cba gene ... 41 0.073
(P27951) RecName: Full=IgA FC receptor; AltName: Full=Beta antig... 41 0.073
FCSOAG(S15330;S20240;S17038)IgA Fc receptor precursor - Streptoc... 41 0.073
AY598359_3(AY598359|pid:none) Streptococcus agalactiae strain 98... 41 0.073
AB221536_3(AB221536|pid:none) Streptococcus agalactiae IS1381-li... 41 0.073
CP000114_132(CP000114|pid:none) Streptococcus agalactiae A909, c... 41 0.073
CP000771_489(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 40 0.13
BT071972_1(BT071972|pid:none) Salmo salar clone ssal-rgf-505-258... 40 0.13
D85924_1(D85924|pid:none) Mus musculus mRNA for myosin, complete... 40 0.16
(P56458) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 40 0.16
(O08638) RecName: Full=Myosin-11; AltName: Full=Myosin heavy cha... 40 0.16
J04833_1(J04833|pid:none) Rabbit smooth muscle myosin heavy chai... 40 0.16
B33501(B33501;A31368) myosin heavy chain 2, smooth muscle - rabb... 40 0.16
AY095512_1(AY095512|pid:none) Drosophila melanogaster AT26524 fu... 40 0.16
AJ748322_32(AJ748322|pid:none) Sulfolobus islandicus plasmid pAR... 39 0.21
(P57550) RecName: Full=Peptidyl-prolyl cis-trans isomerase D; ... 39 0.21
CP001329_323(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 39 0.21
(Q1CRC2) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 39 0.28
(Q90640) RecName: Full=Chromosome-associated kinesin KIF4; ... 39 0.28
CP000923_1007(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 39 0.36
AB020673_1(AB020673|pid:none) Homo sapiens mRNA for KIAA0866 pro... 39 0.36
D10667_1(D10667|pid:none) Homo sapiens mRNA for smooth muscle my... 39 0.36
(Q8RDJ5) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 39 0.36
AF013570_1(AF013570|pid:none) Homo sapiens smooth muscle myosin ... 39 0.36
X69292_1(X69292|pid:none) H.sapiens mRNA for smooth muscle myosin. 39 0.36
AY520816_1(AY520816|pid:none) Homo sapiens smooth muscle myosin ... 39 0.36
AF001548_1(AF001548|pid:none) Human Chromosome 16 BAC clone CIT9... 39 0.36
CP000020_2375(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 39 0.36
(P35749) RecName: Full=Myosin-11; AltName: Full=Myosin heavy cha... 39 0.36
AY520817_1(AY520817|pid:none) Homo sapiens smooth muscle myosin ... 39 0.36
FM178379_2803(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 39 0.36
BC080545_1(BC080545|pid:none) Homo sapiens myosin, heavy chain 1... 39 0.36
(B2UVM6) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 38 0.48
(Q17V90) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 38 0.62
CP000393_1650(CP000393|pid:none) Trichodesmium erythraeum IMS101... 37 0.81
I52860(I52860) smooth muscle myosin heavy chain isoform SM2 - hu... 37 1.1
BC170424_1(BC170424|pid:none) Xenopus laevis nonmuscle myosin II... 37 1.1
CP000673_1966(CP000673|pid:none) Clostridium kluyveri DSM 555, c... 37 1.4
EU841912_1(EU841912|pid:none) Xenopus laevis smooth muscle myosi... 37 1.4
EU841911_1(EU841911|pid:none) Xenopus laevis smooth muscle myosi... 37 1.4
(Q9ZJD9) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 37 1.4
DQ011584_1(DQ011584|pid:none) Plasmodium cynomolgi Mulligan reti... 37 1.4
A47297(A47297;A55441) myosin heavy chain form B, nonmuscle - Afr... 37 1.4
BT072044_1(BT072044|pid:none) Salmo salar clone ssal-rgf-508-316... 37 1.4
BC000280_1(BC000280|pid:none) Homo sapiens myosin, heavy chain 1... 36 1.8
BC098465_1(BC098465|pid:none) Mus musculus myosin, heavy polypep... 36 1.8
AL603662_3(AL603662|pid:none) Mouse DNA sequence from clone RP23... 36 1.8
AK147567_1(AK147567|pid:none) Mus musculus cDNA, RIKEN full-leng... 36 1.8
(Q99105) RecName: Full=Myosin heavy chain, embryonic smooth musc... 36 1.8
CP001101_928(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 36 1.8
(Q27991) RecName: Full=Myosin-10; AltName: Full=Myosin heavy cha... 36 1.8
(Q9JLT0) RecName: Full=Myosin-10; AltName: Full=Myosin heavy cha... 36 1.8
(Q61879) RecName: Full=Myosin-10; AltName: Full=Myosin heavy cha... 36 1.8
CP001047_343(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 36 1.8
CP000348_2634(CP000348|pid:none) Leptospira borgpetersenii serov... 36 1.8
(P35580) RecName: Full=Myosin-10; AltName: Full=Myosin heavy cha... 36 1.8
A59252(A59252;B61231;G02055) myosin heavy chain, nonmuscle, form... 36 1.8
BC149013_1(BC149013|pid:none) Bos taurus syncoilin, intermediate... 36 2.4
M93676_3(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 36 2.4
M93676_2(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 36 2.4
CP001047_47(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, c... 36 2.4
B43402(B43402;A43402) myosin heavy chain-B, neuronal - chicken ... 36 2.4
EU686620_8(EU686620|pid:none) Uncultured marine crenarchaeote AD... 36 2.4
AY934530_1(AY934530|pid:none) Danio rerio nonmuscle myosin heavy... 36 2.4
S43597(S43597)coiled-coil protein homolog R07E5.6 - Caenorhabdit... 36 2.4
AM910995_58(AM910995|pid:none) Plasmodium knowlesi strain H chro... 36 2.4
C88427(C88427) protein R07E5.6 [imported] - Caenorhabditis elega... 36 2.4
M93676_4(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 36 2.4
AE010300_1244(AE010300|pid:none) Leptospira interrogans serovar ... 35 3.1
AJ312390_1(AJ312390|pid:none) Mus musculus mRNA for nonmuscle he... 35 3.1
AK148323_1(AK148323|pid:none) Mus musculus B16 F10Y cells cDNA, ... 35 3.1
AE001439_50(AE001439|pid:none) Helicobacter pylori J99, complete... 35 3.1
M31013_1(M31013|pid:none) Human nonmuscle myosin heavy chain (NM... 35 3.1
BC054360_1(BC054360|pid:none) Mus musculus myosin, heavy polypep... 35 3.1
(Q23223) RecName: Full=Uncharacterized helicase W08D2.7; ... 35 3.1
(P35579) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 35 3.1
AE014188_70(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 35 3.1
AK147211_1(AK147211|pid:none) Mus musculus 15 days embryo liver ... 35 3.1
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 35 3.1
(B6JNX8) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 35 3.1
U87265_1(U87265|pid:none) Bos taurus non-muscle myosin heavy cha... 35 3.1
AM180355_1291(AM180355|pid:none) Clostridium difficile 630 compl... 35 4.0
CP001081_89(CP001081|pid:none) Clostridium botulinum Ba4 str. 65... 35 4.0
AC011914_9(AC011914|pid:none) Arabidopsis thaliana chromosome 1 ... 35 4.0
AK027863_1(AK027863|pid:none) Homo sapiens cDNA FLJ14957 fis, cl... 35 4.0
BC118919_1(BC118919|pid:none) Homo sapiens cingulin-like 1, mRNA... 35 4.0
CP000768_968(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 35 4.0
S03166(S03166;A27066;A26045;A36604;A43298) myosin heavy chain, g... 35 4.0
AB051536_1(AB051536|pid:none) Homo sapiens mRNA for KIAA1749 pro... 35 4.0
(A6MN03) RecName: Full=Putative membrane protein ycf1; &EF38035... 35 4.0
AL844505_120(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.0
CP000903_2884(CP000903|pid:none) Bacillus weihenstephanensis KBA... 35 4.0
CP000940_8(CP000940|pid:none) Clostridium botulinum B1 str. Okra... 35 4.0
EU884425_10(EU884425|pid:none) Dermatophagoides pteronyssinus mi... 35 4.0
BC097883_1(BC097883|pid:none) Xenopus laevis cDNA clone IMAGE:63... 35 4.0
AM445665_2(AM445665|pid:none) Vitis vinifera contig VV78X005233.... 35 4.0
AM429677_1(AM429677|pid:none) Vitis vinifera contig VV78X000641.... 35 4.0
CP000496_685(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 35 4.0
EU814897_1(EU814897|pid:none) Tetrahymena thermophila Rnf2p (RNF... 35 4.0
BC093827_1(BC093827|pid:none) Homo sapiens cingulin-like 1, mRNA... 35 4.0
CU469464_103(CU469464|pid:none) Candidatus Phytoplasma mali stra... 35 4.0
CU928174_393(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 35 4.0
AY274808_1(AY274808|pid:none) Homo sapiens KIAA1749 protein mRNA... 35 4.0
AB280016_1(AB280016|pid:none) Molgula tectiformis Mt-MHC1-b mRNA... 35 4.0
BC106652_1(BC106652|pid:none) Xenopus laevis cDNA clone IMAGE:50... 35 4.0
CR940347_1055(CR940347|pid:none) Theileria annulata strain Ankar... 35 4.0
BC045033_1(BC045033|pid:none) Xenopus laevis similar to PTPRF in... 35 4.0
(Q0VF96) RecName: Full=Cingulin-like protein 1; AltName: Full=Pa... 35 4.0
AY584531_11(AY584531|pid:none) Helicobacter pylori plasmid pAL20... 35 5.3
CP001581_1906(CP001581|pid:none) Clostridium botulinum A2 str. K... 35 5.3
CU928165_107(CU928165|pid:none) Kluyveromyces thermotolerans str... 35 5.3
BC158061_1(BC158061|pid:none) Mus musculus cingulin-like 1, mRNA... 35 5.3
BC139006_1(BC139006|pid:none) Mus musculus cingulin-like 1, mRNA... 35 5.3
AK173252_1(AK173252|pid:none) Mus musculus mRNA for mKIAA1749 pr... 35 5.3
CP000596_225(CP000596|pid:none) Ostreococcus lucimarinus CCE9901... 35 5.3
AJ627213_5(AJ627213|pid:none) Gallus gallus primary C-C chemokin... 35 5.3
CP001047_455(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 35 5.3
CP000963_152(CP000963|pid:none) Clostridium botulinum A3 str. Lo... 35 5.3
AM910987_170(AM910987|pid:none) Plasmodium knowlesi strain H chr... 35 5.3
AE010300_3605(AE010300|pid:none) Leptospira interrogans serovar ... 35 5.3
BC070854_1(BC070854|pid:none) Xenopus laevis kinesin family memb... 35 5.3
AC114263_13(AC114263|pid:none) Dictyostelium discoideum chromoso... 35 5.3
AE016823_583(AE016823|pid:none) Leptospira interrogans serovar C... 35 5.3
(P08799) RecName: Full=Myosin-2 heavy chain; AltName: Full=Myosi... 34 6.9
AE016796_1223(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 34 6.9
FM204883_393(FM204883|pid:none) Streptococcus equi subsp. equi 4... 34 6.9
CP001129_337(CP001129|pid:none) Streptococcus equi subsp. zooepi... 34 6.9
CP001277_205(CP001277|pid:none) Candidatus Hamiltonella defensa ... 34 6.9
AE004092_1404(AE004092|pid:none) Streptococcus pyogenes M1 GAS, ... 34 6.9
AP010935_1809(AP010935|pid:none) Streptococcus dysgalactiae subs... 34 6.9
S50332(S50332)NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chai... 34 6.9
CP000102_1058(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 34 6.9
CP000924_540(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 34 6.9
AF067943_8(AF067943|pid:none) Caenorhabditis elegans cosmid F59B... 34 6.9
(P32873) RecName: Full=GTPase-activating protein BEM3; AltName: ... 34 6.9
AE014133_1359(AE014133|pid:none) Streptococcus mutans UA159, com... 34 6.9
A26655(A26655;A24728;S00250) myosin heavy chain [similarity] - s... 34 6.9
AM295007_297(AM295007|pid:none) Streptococcus pyogenes Manfredo ... 34 6.9
G89007(G89007)protein F59B1.8 [imported] - Caenorhabditis elegans 34 6.9
CP000107_449(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 34 9.0
AL928875_13(AL928875|pid:none) Zebrafish DNA sequence from clone... 34 9.0
AL844509_394(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.0
AY737035_1(AY737035|pid:none) Oreochromis mossambicus clone Ov09... 34 9.0
CP001056_1175(CP001056|pid:none) Clostridium botulinum B str. Ek... 34 9.0
CP001291_4777(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 34 9.0
(B0K3Y0) RecName: Full=Chaperone protein dnaK; AltName: Full=Hea... 34 9.0
AP006878_172(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 34 9.0
AY673996_153(AY673996|pid:none) Gracilaria tenuistipitata var. l... 34 9.0

>CP000575_1197(CP000575|pid:none) Staphylothermus marinus F1,
complete genome.
Length = 519

Score = 44.3 bits (103), Expect = 0.007
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Frame = +3

Query: 201 IQERHKTSIRTLEKLESLILMEEKSKEVLIEYQKMAKKDNT--KVDMSSIKKQLRDSEVQ 374
I+ERHK +I T+EK I E K+ E IE K KD + K ++ +KK L+D E
Sbjct: 259 IKERHKPTIETIEKRIDEIKSEIKTIEEEIEKAKQYGKDTSDLKKKLNDLKKTLKDLE-- 316

Query: 375 INELKESKRKLEMEALATSPSKANXXXXXXXXXXXXXXXXXELRKKKLEFGHRRSRSVTD 554
EL+E+ +++E E + + + E + +LE + + + D
Sbjct: 317 -EELREANKRMEDE-IESVQKRYKEMIESENEKIKRLYNEREKLRLELEALEKEANTRYD 374

Query: 555 QVEKNILK 578
+ KN++K
Sbjct: 375 SIRKNLMK 382

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,059,652,108
Number of extensions: 16245569
Number of successful extensions: 55318
Number of sequences better than 10.0: 154
Number of HSP's gapped: 55158
Number of HSP's successfully gapped: 155
Length of query: 330
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 201
Effective length of database: 639,555,889
Effective search space: 128550733689
Effective search space used: 128550733689
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.36 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U04339-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0