Contig-U04328-1
Contig ID Contig-U04328-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04328-1 (Contig-U04328-1Q) /CSM_Contig/Contig-U04328-1Q.Seq.d
CCTCCTATATTTATATAAATTAATTAAAATAATGGATCAATTACCAGAAT
TAGTACCATTTTTACTTGAACCAAAATCAGAAATTAAACTTTTAGCATTA
CAACATCTTTTAGGTGTATCAGATAATCAAGAAGCTAGAGATATTTTAAA
ATCAACACAAATTATTAATAATTGTATTAAATTAATTACAGATTCAAATC
ATGTTGTTGTTAGACACGCATTAACAATCTTAATTAATCTATGTCAAGAT
ACAGATATGTTGAATGATATCGTTAAAAAGAATATCGTACCAAGATTAGT
TGATGGTACAACTGATACAAAAAATAAAATGAGTGAAATTTTTGCAATGC
TTTTATCAAATGTTACTCATACAAAAGAAGGTTGTTTATCATTAATGCAA
TGTGGTAAAGAATTAGAGGCATTCTTTATAATGAAATTAGTTCAAGTGTT
AACAATGGATTCAAATCAAGAAGATTATTTTAAATCAACTAAAAACAATT
GGATTGTTAATATCATTCTAAATGTTACACAAATTCAAGAAGGAAGAAAG
ATTGTATTAGATAAAGAGAATCAAATATTTAAAGAGATTTTACCATTGGT
TAGACATGAAAATGTTATCAAGAGAAGAGGTATCCTTGGTATAATTAGAA
ATTGTTGTTACTNTGAACAACATCNCGATTATTTAATATCNCCAGAAGTT
GATATTCTCACTAAATTATGTTTACCAATTAGAGGTAATGATAAATTGGA
TGATGATGATTTGGTTGGTTTACATATAGATTTACATAATTCTTCTTTAC
CAATTGGTAATGAAAGAGATCAAGATAGAGAATGTAGAAAAATGGTTGTA
GAATCTTTAATCTTTTTAACTGGTACTAAAAAAGGAAGAGTTTCAATGAG
AACTGCTAAAATTTATCCAATTTTAAGAAATTTATTTAATTTTGAAACTG
AAGAAGAATTACGTGATAATGTTGAAAAAGTTGTTGAGTTAATTATTAGA
GATGAAGAAGGTGATCCAACTCCAGAAGAAATTGAACAAATGAATAAAAA
ACAAAAATTAGAAGATGAAGATGCTCAATTTGAAACTGATGAAATTTAAA
TAATATATATAAATAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

Gap no gap
Contig length 1158
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7483603
End point 7482445
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U04328
List of clone(s)

est1=VFG766F,-5,496
est2=SSA193F,9,639
est3=VFG766Z,458,1136
est4=SSA193Z,689,1159
Translated Amino Acid sequence
LLYLYKLIKIMDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIK
LITDSNHVVVRHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSN
VTHTKEGCLSLMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQE
GRKIVLDKENQIFKEILPLVRHENVIKRRGILGIIRNCCYXEQHXDYLISPEVDILTKLC
LPIRGNDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMR
TAKIYPILRNLFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQF
ETDEI*iiyinkikkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ppifi*in*nngsitristift*tkirn*tfsittsfrcir*srs*ryfkintny**ly*
inyrfksccc*trinnln*smsryryve*yr*keyrtkis*wyn*ykk*ne*nfcnafik
cysykrrlfiinamw*rirgilyneisssvnngfksrrlf*in*kqldc*yhskcytnsr
rkkdcir*resni*rdftig*t*kcyqekrypwyn*kllll*ttsrlfnixrs*ysh*im
ftn*r***ig***fgwftyrft*ffftnw**krsr*rm*kngcrifnlfnwy*krksfne
nc*nlsnfkkfi*f*n*rrit**c*ksc*vny*r*rr*snsrrn*tne*ktkirr*rcsi
*n**nlnniyk*nkkkkkkkkkkkkk


Frame B:
LLYLYKLIKIMDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIK
LITDSNHVVVRHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSN
VTHTKEGCLSLMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQE
GRKIVLDKENQIFKEILPLVRHENVIKRRGILGIIRNCCYXEQHXDYLISPEVDILTKLC
LPIRGNDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMR
TAKIYPILRNLFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQF
ETDEI*iiyinkikkkkkkkkkkkk


Frame C:
syiyin*lk*winyqn*yhfylnqnqklnf*hynif*vyqiikkleif*nqhklliivln
*lqiqimllldth*qs*liyvkiqic*mislkrisyqd*lmvqliqkik*vkflqcfyqm
lliqkkvvyh*cnvvkn*rhsl**n*fkc*qwiqikkiilnqlktigllisf*mlhkfkk
eerly*ikrikylkrfyhwldmkmlsreevslv*leivvtxnnixii*yxqklifslnyv
yqlevminwmmmiwlvyi*iyiillyqlvmkeikienvekwl*nl*sf*lvlkkeefq*e
llkfiqf*eiylilklkknyvimlkklls*llemkkviqlqkklnk*iknkn*kmkmlnl
klmkfk*yi*ik*kkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04328-1 (Contig-U04328-1Q)
/CSM_Contig/Contig-U04328-1Q.Seq.d
(1158 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04328-1 (Contig-U04328-1Q) /CSM_Contig/Conti... 2129 0.0
Contig-U04168-1 (Contig-U04168-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U07005-1 (Contig-U07005-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U14717-1 (Contig-U14717-1Q) /CSM_Contig/Conti... 36 0.082
Contig-U14356-1 (Contig-U14356-1Q) /CSM_Contig/Conti... 36 0.082
Contig-U13882-1 (Contig-U13882-1Q) /CSM_Contig/Conti... 36 0.082
Contig-U13857-1 (Contig-U13857-1Q) /CSM_Contig/Conti... 36 0.082
Contig-U13343-1 (Contig-U13343-1Q) /CSM_Contig/Conti... 36 0.082
Contig-U13289-1 (Contig-U13289-1Q) /CSM_Contig/Conti... 36 0.082
Contig-U01598-1 (Contig-U01598-1Q) /CSM_Contig/Conti... 32 1.3

>Contig-U04328-1 (Contig-U04328-1Q) /CSM_Contig/Contig-U04328-1Q.Seq.d
Length = 1158

Score = 2129 bits (1074), Expect = 0.0
Identities = 1107/1119 (98%)
Strand = Plus / Plus


Query: 1 cctcctatatttatataaattaattaaaataatggatcaattaccagaattagtaccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctcctatatttatataaattaattaaaataatggatcaattaccagaattagtaccatt 60


Query: 61 tttacttgaaccaaaatcagaaattaaacttttagcattacaacatcttttaggtgtatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttacttgaaccaaaatcagaaattaaacttttagcattacaacatcttttaggtgtatc 120


Query: 121 agataatcaagaagctagagatattttaaaatcaacacaaattattaataattgtattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agataatcaagaagctagagatattttaaaatcaacacaaattattaataattgtattaa 180


Query: 181 attaattacagattcaaatcatgttgttgttagacacgcattaacaatcttaattaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attaattacagattcaaatcatgttgttgttagacacgcattaacaatcttaattaatct 240


Query: 241 atgtcaagatacagatatgttgaatgatatcgttaaaaagaatatcgtaccaagattagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgtcaagatacagatatgttgaatgatatcgttaaaaagaatatcgtaccaagattagt 300


Query: 301 tgatggtacaactgatacaaaaaataaaatgagtgaaatttttgcaatgcttttatcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatggtacaactgatacaaaaaataaaatgagtgaaatttttgcaatgcttttatcaaa 360


Query: 361 tgttactcatacaaaagaaggttgtttatcattaatgcaatgtggtaaagaattagaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgttactcatacaaaagaaggttgtttatcattaatgcaatgtggtaaagaattagaggc 420


Query: 421 attctttataatgaaattagttcaagtgttaacaatggattcaaatcaagaagattattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attctttataatgaaattagttcaagtgttaacaatggattcaaatcaagaagattattt 480


Query: 481 taaatcaactaaaaacaattggattgttaatatcattctaaatgttacacaaattcaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taaatcaactaaaaacaattggattgttaatatcattctaaatgttacacaaattcaaga 540


Query: 541 aggaagaaagattgtattagataaagagaatcaaatatttaaagagattttaccattggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggaagaaagattgtattagataaagagaatcaaatatttaaagagattttaccattggt 600


Query: 601 tagacatgaaaatgttatcaagagaagaggtatccttggtataattagaaattgttgtta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tagacatgaaaatgttatcaagagaagaggtatccttggtataattagaaattgttgtta 660


Query: 661 ctntgaacaacatcncgattatttaatatcnccagaagttgatattctcactaaattatg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctntgaacaacatcncgattatttaatatcnccagaagttgatattctcactaaattatg 720


Query: 721 tttaccaattagaggtaatgataaattggatgatgatgatttggttggtttacatataga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tttaccaattagaggtaatgataaattggatgatgatgatttggttggtttacatataga 780


Query: 781 tttacataattcttctttaccaattggtaatgaaagagatcaagatagagaatgtagaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tttacataattcttctttaccaattggtaatgaaagagatcaagatagagaatgtagaaa 840


Query: 841 aatggttgtagaatctttaatctttttaactggtactaaaaaaggaagagtttcaatgag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aatggttgtagaatctttaatctttttaactggtactaaaaaaggaagagtttcaatgag 900


Query: 901 aactgctaaaatttatccaattttaagaaatttatttaattttgaaactgaagaagaatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aactgctaaaatttatccaattttaagaaatttatttaattttgaaactgaagaagaatt 960


Query: 961 acgtgataatgttgaaaaagttgttgagttaattattagagatgaagaaggtgatccaac 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 acgtgataatgttgaaaaagttgttgagttaattattagagatgaagaaggtgatccaac 1020


Query: 1021 tccagaagaaattgaacaaatgaatnnnnnnnnnnnnttagaagatgaagatgctcaatt 1080
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1021 tccagaagaaattgaacaaatgaataaaaaacaaaaattagaagatgaagatgctcaatt 1080


Query: 1081 tgaaactgatgaaatttaaataatatatataaataaaat 1119
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tgaaactgatgaaatttaaataatatatataaataaaat 1119


>Contig-U04168-1 (Contig-U04168-1Q) /CSM_Contig/Contig-U04168-1Q.Seq.d
Length = 382

Score = 40.1 bits (20), Expect = 0.005
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 873 gtactaaaaaaggaagagtttcaa 896
||||||||||||||||| ||||||
Sbjct: 97 gtactaaaaaaggaagactttcaa 120


>Contig-U07005-1 (Contig-U07005-1Q) /CSM_Contig/Contig-U07005-1Q.Seq.d
Length = 271

Score = 38.2 bits (19), Expect = 0.021
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 920 attttaagaaatttatttaattt 942
||||||| |||||||||||||||
Sbjct: 199 attttaacaaatttatttaattt 221


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,459
Number of Sequences: 6905
Number of extensions: 31459
Number of successful extensions: 3685
Number of sequences better than 10.0: 460
length of query: 1158
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1142
effective length of database: 5,564,391
effective search space: 6354534522
effective search space used: 6354534522
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.16
Homology vs DNA
Query= Contig-U04328-1 (Contig-U04328-1Q) /CSM_Contig/Contig-U04328-1Q.Seq.d
(1158 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ431538) Dictyostelium discoideum cDNA clone:ddv14d17, 3' ... 1136 0.0 2
(C24685) Dictyostelium discoideum slug cDNA, clone SL-X093. 1090 0.0 3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 999 0.0 5
(BJ413190) Dictyostelium discoideum cDNA clone:ddv14d17, 5' ... 983 0.0 1
(AU075951) Dictyostelium discoideum slug cDNA, clone SSA193. 630 0.0 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 8e-04 17
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.003 13
(CG680708) 80L24_39T7 Carica papaya BAC library Carica papay... 56 0.003 1
(CP000993) Borrelia recurrentis A1, complete genome. 36 0.003 19
(AM482902) Vitis vinifera contig VV78X100283.5, whole genome... 38 0.005 6
(CP000976) Borrelia duttonii Ly, complete genome. 36 0.009 19
(AC134766) Rattus norvegicus clone CH230-157E20, *** SEQUENC... 54 0.012 1
(CV182421) tai86e12.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 54 0.012 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 42 0.013 18
(EF710654) Glyptapanteles indiensis clone BAC 10J2, complete... 42 0.017 8
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.017 13
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 42 0.032 18
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.049 11
(FF298249) 279321698 Pea aphid whole body normalized full le... 52 0.049 1
(EJ603652) 1092961214796 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.067 2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 0.085 14
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 0.10 10
(DQ145710) Strongyloides stercoralis 28S ribosomal RNA gene,... 46 0.11 2
(EJ266545) 1095351016815 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.13 3
(EF158072) Plasmodium falciparum erythrocyte membrane protei... 34 0.13 5
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 0.14 18
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.14 14
(ER317157) 1092344152176 Global-Ocean-Sampling_GS-34-01-01-1... 36 0.15 3
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 38 0.16 11
(AL440188) T7 end of clone BD0AA010F05 of library BD0AA from... 38 0.17 3
(EJ802008) 1093017433508 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.18 3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.19 19
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 32 0.19 19
(EJ881471) 1093018398208 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.19 3
(BX469896) Zebrafish DNA sequence from clone DKEY-52L6 in li... 50 0.19 1
(CJ418147) Molgula tectiformis cDNA, larva clone:mtlv029k07,... 48 0.21 2
(AC152818) Medicago truncatula clone mth2-85g12, complete se... 42 0.21 9
(DU084615) 281472 Tomato HindIII BAC Library Solanum lycoper... 48 0.24 2
(AC144484) Medicago truncatula clone mth2-30o16, complete se... 42 0.25 8
(EU912438) Vaucheria litorea chloroplast, complete genome. 32 0.36 10
(AY515252) Medicago truncatula clone mth2-50E03, *** SEQUENC... 46 0.39 5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.40 12
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome. 46 0.40 19
(EK440591) 1095522086760 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.43 3
(AL035476) Plasmodium falciparum MAL4P3. 44 0.50 11
(AX926714) Sequence 4 from Patent WO03084989. 34 0.50 11
(AC225681) Tachyglossus aculeatus clone TA_Ba-517L8, WORKING... 40 0.59 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.60 17
(AM644097) Entamoeba moshkovskii FIC GSS, clone mosh006e04.q1k. 46 0.60 2
(AC092876) Homo sapiens chromosome 3 clone RP11-101H7, WORKI... 36 0.68 11
(EF575697) Gallus gallus clone 1_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575696) Gallus gallus clone 1_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575695) Gallus gallus clone 2_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575694) Gallus gallus clone 2_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575693) Gallus gallus clone 3_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575692) Gallus gallus clone 3_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575691) Gallus gallus clone 4_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575690) Gallus gallus clone 4_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575689) Gallus gallus clone 5_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575688) Gallus gallus clone 5_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575687) Gallus gallus clone 6_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575686) Gallus gallus clone 6_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575685) Gallus gallus clone 7_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575684) Gallus gallus clone 7_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575683) Gallus gallus clone 8_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575682) Gallus gallus clone 8_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575681) Gallus gallus clone 9_inclTding_gaps.seq_Y Mx gen... 48 0.76 1
(EF575680) Gallus gallus clone 9_inclTding_gaps.seq_X Mx gen... 48 0.76 1
(EF575679) Gallus gallus clone 10_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575678) Gallus gallus clone 10_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575677) Gallus gallus clone 11_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575676) Gallus gallus clone 11_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575675) Gallus gallus clone 12_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575674) Gallus gallus clone 12_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575672) Gallus gallus clone 13_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575671) Gallus gallus clone 14_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575670) Gallus gallus clone 14_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575669) Gallus gallus clone 15_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575668) Gallus gallus clone 15_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575667) Gallus gallus clone 16_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575666) Gallus gallus clone 16_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575665) Gallus gallus clone 17_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575664) Gallus gallus clone 17_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575663) Gallus gallus clone 18_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575662) Gallus gallus clone 18_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575661) Gallus gallus clone 19_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575660) Gallus gallus clone 19_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575659) Gallus gallus clone 20_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575658) Gallus gallus clone 20_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575657) Gallus gallus clone 21_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575656) Gallus gallus clone 21_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575655) Gallus gallus clone 22_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575654) Gallus gallus clone 22_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575653) Gallus gallus clone 23_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575652) Gallus gallus clone 23_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575651) Gallus gallus clone 24_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575650) Gallus gallus clone 24_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(EF575649) Gallus gallus clone 25_inclTding_gaps.seq_Y Mx ge... 48 0.76 1
(EF575648) Gallus gallus clone 25_inclTding_gaps.seq_X Mx ge... 48 0.76 1
(DQ788616) Gallus gallus isolate 17 breed Rhode Island Red M... 48 0.76 1
(DQ788615) Gallus gallus isolate 25 breed White Leghorn MX (... 48 0.76 1
(DQ788614) Gallus gallus isolate 7 breed Silkie MX (MX) gene... 48 0.76 1
(DQ788613) Gallus gallus isolate 16 breed Rhode Island Red M... 48 0.76 1
(AM466627) Vitis vinifera contig VV78X164788.12, whole genom... 48 0.76 1
(AM437371) Vitis vinifera, whole genome shotgun sequence, co... 48 0.76 1
(DL005696) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 48 0.76 1
(CS459621) Sequence 102 from Patent WO2006117596. 48 0.76 1
(DQ225333) Mesocheira sp. DS-2005 cytochrome c oxidase subun... 48 0.76 1
(AF300523) Diadasia afflicta cytochrome oxidase subunit I ge... 48 0.76 1
(AC092545) Homo sapiens BAC clone RP11-586A2 from 4, complet... 48 0.76 1
(AC084839) Homo sapiens chromosome 4 clone CTD-2050C12 map 4... 48 0.76 1
(AC182529) Oryctolagus cuniculus clone LB1-245J12, WORKING D... 48 0.76 1
(AC006553) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 48 0.76 1
(AQ781116) HS_3104_A1_B04_MR CIT Approved Human Genomic Sper... 48 0.76 1
(EJ037056) 1095454076098 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.76 1
(AJ562644) Cryptosporidium parvum GSS, PAC clone pica_0010_b... 48 0.76 1
(CT500693) A BAC library has been constructed from cultivar ... 48 0.76 1
(CJ427388) Molgula tectiformis cDNA, larva clone:mtlv029k07,... 48 0.76 1
(CJ425343) Molgula tectiformis cDNA, larva clone:mtlv023k11,... 48 0.76 1
(CF390476) RTDR2_19_A09.g1_A021 Loblolly pine roots recoveri... 48 0.76 1
(BW374624) Ciona intestinalis cDNA, clone:cidg805d06, 3'end,... 48 0.76 1
(BW372807) Ciona intestinalis cDNA, clone:cidg812p12, 3'end,... 48 0.76 1
(BW318906) Ciona intestinalis cDNA, clone:cidg812p12, 5'end,... 48 0.76 1
(FF940018) CBWU74362.g1 Yutaka Satou unpublished cDNA librar... 48 0.76 1
(EV830970) TT1DI01TH Tetrahymena thermophila SB210 cDNA libr... 48 0.76 1
(AC234726) Brassica rapa subsp. pekinensis chromosome Linkag... 38 0.78 9
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 36 0.78 21
(EK429503) 1095516110983 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.80 2
(EI823790) POTJ234TR Solanum tuberosum RHPOTKEY BAC ends Sol... 40 0.80 2
(DQ529237) Campodea lubbocki mitochondrion, complete genome. 34 0.87 5
(ER468703) 1092963941451 Global-Ocean-Sampling_GS-35-01-01-1... 44 0.91 2
(CP000393) Trichodesmium erythraeum IMS101, complete genome. 38 0.91 19
(CP000382) Clostridium novyi NT, complete genome. 38 0.93 16
(AC180907) Strongylocentrotus purpuratus clone R3-3064J10, W... 36 0.98 11
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 34 1.0 11
(CR940352) Theileria annulata genomic DNA chromosome 3. 34 1.1 21
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 1.1 8
(EY360948) CAWZ7455.rev CAWZ Helobdella robusta Primary Late... 36 1.2 3
(AC216664) Solanum lycopersicum chromosome 6 clone C06SLm006... 32 1.2 7
(AC147805) Mus musculus chromosome 5 clone RP24-239F18 map 5... 40 1.2 4
(AC122610) Rattus norvegicus clone CH230-44D1, WORKING DRAFT... 34 1.2 9
(AY689436) Deerpox virus W-848-83, complete genome. 38 1.4 10
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 40 1.4 13
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 1.4 17
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 1.4 12
(CT009682) Mouse DNA sequence from clone RP23-136H15 on chro... 32 1.5 2
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 42 1.5 18
(AC118603) Mus musculus chromosome 16, clone RP24-79L6, comp... 32 1.5 2
(BX470262) Zebrafish DNA sequence from clone CH211-120K20 in... 36 1.6 2
(GF005901) pRRL2:Newb:20080411:386091 USMARC Pig Breed SNP D... 36 1.6 2
(BV962067) pRRL2:Newb:20080411:342330 USMARC Pig Breed SNP D... 42 1.6 2
(AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 1.6 8
(AC162312) Mus musculus clone RP23-453L16, WORKING DRAFT SEQ... 34 1.7 7
(AY689437) Deerpox virus W-1170-84, complete genome. 38 1.7 9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 1.8 17
(EJ724179) 1092959482379 Global-Ocean-Sampling_GS-30-02-01-1... 40 1.8 3
(AB084763) Drosophila sechellia mitochondrial DNA, strain:SS... 44 1.9 2
(AC175535) Bos taurus clone CH240-381G13, WORKING DRAFT SEQU... 38 2.0 5
(AC171130) Helobdella robusta clone CH306-1A12, complete seq... 32 2.1 9
(AC136754) Mus musculus chromosome 1, clone RP23-176K16, com... 36 2.2 9
(DU443794) 1098421114016 CHORI-243 Ovis aries genomic clone ... 36 2.2 2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 2.2 13
(AE017263) Mesoplasma florum L1 complete genome. 34 2.3 19
(BS000045) Pan troglodytes chromosome 22 clone:RP43-179P23, ... 34 2.3 9
(CR954964) Mouse DNA sequence from clone RP24-201A22 on chro... 40 2.3 5
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 2.4 12
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 30 2.4 12
(AE017245) Mycoplasma synoviae 53, complete genome. 32 2.4 18
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 2.5 13
(BH939393) odd83d12.g1 B.oleracea002 Brassica oleracea genom... 38 2.5 2
(CT573365) M.truncatula DNA sequence from clone MTH2-89E15 o... 46 2.5 4
(DQ788104) Bombus simillimus voucher SC243 16S ribosomal RNA... 38 2.5 3
(AM458594) Vitis vinifera contig VV78X201737.11, whole genom... 38 2.5 4
(AM476482) Vitis vinifera contig VV78X091179.12, whole genom... 34 2.6 6
(AC021347) Homo sapiens clone RP11-24K19, LOW-PASS SEQUENCE ... 38 2.6 6
(AY673996) Gracilaria tenuistipitata var. liui chloroplast, ... 38 2.7 9
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 2.7 12
(EJ988520) 1093023029765 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.9 2
(AL591643) Human DNA sequence from clone CTD-2076M15 on chro... 46 2.9 2
(EK334631) 1095467035888 Global-Ocean-Sampling_GS-31-01-01-1... 40 2.9 2
(EJ744919) 1092962046634 Global-Ocean-Sampling_GS-30-02-01-1... 40 2.9 2
(DU032631) 14215 Tomato HindIII BAC Library Solanum lycopers... 40 2.9 2
(EJ959102) 1093018990721 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.9 2
(AM439742) Vitis vinifera contig VV78X173812.6, whole genome... 44 3.0 2
(EJ334218) 1092963465208 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.0 2
(AC116331) Homo sapiens chromosome 5 clone CTD-2037A14, comp... 32 3.0 8
(CR759910) Zebrafish DNA sequence from clone DKEYP-79C4 in l... 46 3.0 1
(AL928943) Mouse DNA sequence from clone RP23-435J15 on chro... 46 3.0 1
(AC123946) Mus musculus BAC clone RP23-97L17 from chromosome... 46 3.0 1
(AC146357) Otolemur garnettii clone CH256-396G19, complete s... 46 3.0 1
(L36897) Saccharomyces cerevisiae mitochondrion oxi3 gene, a... 46 3.0 1
(J01477) Yeast (S.cerevisiae) mitochondrial cox1 gene for cy... 46 3.0 1
(EF436460) Candelaria concolor small subunit ribosomal RNA g... 46 3.0 1
(EF104556) Arabidopsis suecica clone scr_24 genomic sequence. 46 3.0 1
(CU633446) Podospora anserina genomic DNA chromosome 2, supe... 46 3.0 1
(AM484888) Vitis vinifera contig VV78X063253.10, whole genom... 46 3.0 1
(AM468597) Vitis vinifera, whole genome shotgun sequence, co... 46 3.0 1
(AL132957) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 46 3.0 1
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 46 3.0 1
(AC185357) Populus trichocarpa clone Pop1-29F24, complete se... 46 3.0 1
(AC147877) Medicago truncatula clone mth2-9b13, complete seq... 46 3.0 1
(AC134322) Medicago truncatula clone mth2-17i21, complete se... 46 3.0 1
(EA102780) Sequence 163 from patent US 7195870. 46 3.0 1
(BD460512) Diagnosis of Diseases Associated with Cell Cycle. 46 3.0 1
(BD452434) Diagnosis of Diseases Associated with Cell Cycle. 46 3.0 1
(AX323697) Sequence 185 from Patent WO0192565. 46 3.0 1
(AX278000) Sequence 163 from Patent WO0177375. 46 3.0 1
(AX252048) Sequence 309 from Patent WO0168911. 46 3.0 1
(GM996045) Sequence 185 from Patent EP2014776. 46 3.0 1
(CR933454) Paramecium tetraurelia, Small GTPase rab, putativ... 46 3.0 1
(AL162402) Human DNA sequence from clone RP5-1054K23 on chro... 46 3.0 1
(AC149101) Otolemur garnettii clone CH256-516D5, WORKING DRA... 46 3.0 1
(AC148955) Otolemur garnettii clone CH256-382G17, WORKING DR... 46 3.0 1
(CU407240) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1
(CU076061) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1
(CR848046) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.0 1
(AL604030) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 3.0 1
(AC216721) Solanum lycopersicum chromosome 9 clone C09SLe001... 46 3.0 1
(AC169560) Bos taurus clone CH240-220K24, WORKING DRAFT SEQU... 46 3.0 1
(AC167423) Mus musculus chromosome 12 clone CH36-307E19, ***... 46 3.0 1
(AC166424) Bos taurus clone CH240-182F5, WORKING DRAFT SEQUE... 46 3.0 1
(AC164203) Bos taurus clone CH240-142E2, *** SEQUENCING IN P... 46 3.0 1
(FI118996) MUGQ_CH252P492C19T7_CH0192_078 CHORI-252 Vervet M... 46 3.0 1
(ET214976) MUGQ_CH252P417P16Sp6_CP799_050 CHORI-252 Vervet M... 46 3.0 1
(EK272543) 1095462263980 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.0 1
(EJ896423) 1093018467825 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.0 1
(EJ807684) 1093017469429 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.0 1
(AM615946) Entamoeba invadens IP1 GSS, clone inv071g09.q1k. 46 3.0 1
(DX538964) GH_MBb0086B15f GH_MBb Gossypium hirsutum genomic ... 46 3.0 1
(DH057872) Oryzias latipes Fosmid clone:GOLWFno109_k20, reve... 46 3.0 1
(CZ195280) AIAA-aac53l06.g1 Ancylostoma caninum whole genome... 46 3.0 1
(CW951400) TcB36.4_E07_SP6 Tribolium BAC library Tribolium c... 46 3.0 1
(CW796067) WiscDsLox421D8 Arabidopsis thaliana T-DNA inserti... 46 3.0 1
(CL347194) RPCI44_272G21.r RPCI-44 Sus scrofa genomic clone ... 46 3.0 1
(CC885431) SALK_147061.43.10.x Arabidopsis thaliana TDNA ins... 46 3.0 1
(CC271952) CH261-37I16_Sp6.2 CH261 Gallus gallus genomic clo... 46 3.0 1
(EH933651) EBENXNS01CGKZL 8-day Arabidopsis seedlings, aeria... 46 3.0 1
(EH010703) USDA-FP_183776 Lysiphlebus testaceipes adult whol... 46 3.0 1
(BU966314) kk81c08.y1 Ascaris suum embryo pAMP1 v2 Ascaris s... 46 3.0 1
(BJ394063) Dictyostelium discoideum cDNA clone:dds33l17, 5' ... 46 3.0 1
(BG227552) kq10f01.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BG227203) kp98e10.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BF015272) kq61g09.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BF015221) kq65h07.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BE582025) kq57h09.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BE581736) kq51e08.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BE581239) kq44b02.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(BE579267) kq24h10.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 3.0 1
(FM013454) Dicentrarchus labrax EST, clone cDN28P0001P24, 5'... 46 3.0 1
(EX531272) MTGland_B021_2007-05-17/MTGlandB021_E12_044_1 Med... 46 3.0 1
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ... 46 3.0 1
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet... 46 3.0 1
(CP001098) Halothermothrix orenii H 168, complete genome. 46 3.0 1
(EJ913711) 1093018548847 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.0 2
(CT472064) Sus scrofa genomic clone CH242-511I6, genomic sur... 38 3.0 2
(AC125369) Mus musculus BAC clone RP24-380D10 from 8, comple... 36 3.0 7
(AL034557) Plasmodium falciparum MAL4P1. 36 3.1 15
(BY932107) Bombyx mori cDNA, clone:E_EL_ovS0_32D12_R_0, 3' e... 38 3.1 2
(EK353938) 1095468342899 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.2 2
(ER286903) 1092343575947 Global-Ocean-Sampling_GS-34-01-01-1... 44 3.2 2
(EK397730) 1095469527372 Global-Ocean-Sampling_GS-31-01-01-1... 44 3.2 2
(EK264094) 1095462204619 Global-Ocean-Sampling_GS-31-01-01-1... 44 3.3 2
(FJ416603) Leishmania donovani isolate MHOM/SD/62/1S-Cl2D ma... 40 3.4 2
(AC216294) Solanum lycopersicum chromosome 12 clone LE_HBa-2... 36 3.4 5
(EJ752658) 1092963047000 Global-Ocean-Sampling_GS-30-02-01-1... 40 3.4 2
(AC159652) Mus musculus 10 BAC RP24-123H21 (Roswell Park Can... 38 3.5 5
(AM427842) Vitis vinifera contig VV78X017378.17, whole genom... 38 3.5 5
(AY376688) Crinipellis perniciosa mitochondrion, complete ge... 38 3.6 8
(BX538353) Cryptosporidium parvum chromosome 6, complete seq... 40 3.6 9
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 34 3.7 7
(CS468836) Sequence 27 from Patent EP1748080. 32 3.7 7
(CS468835) Sequence 26 from Patent EP1748080. 32 3.7 7
(CS419313) Sequence 27 from Patent WO2006094836. 32 3.7 7
(CS419312) Sequence 26 from Patent WO2006094836. 32 3.7 7
(AC232864) Solanum lycopersicum chromosome 6 clone C06SLm010... 34 3.7 9
(AC188527) Canis Familiaris chromosome 10, clone XX-29J8, co... 40 3.9 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 4.0 16
(BX936354) Mouse DNA sequence from clone RP23-354D7 on chrom... 40 4.3 5
(AL845370) Mouse DNA sequence from clone RP23-272L3 on chrom... 38 4.3 6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 4.4 7
(DJ386672) Diagnosis of Diseases Associated with Metastasis. 36 4.5 3
(AX458614) Sequence 160 from Patent WO0246454. 36 4.5 3
(AX348804) Sequence 262 from Patent WO0202807. 36 4.5 3
(AX346581) Sequence 1652 from Patent WO0200928. 36 4.5 3
(AX281468) Sequence 132 from Patent WO0177376. 36 4.5 3
(AC232878) Solanum tuberosum chromosome 6 clone RHPOTKEY150M... 38 4.6 6
(AC195453) Medicago truncatula clone mth2-43p1, complete seq... 44 4.6 6
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 30 4.7 13
(AC154181) Mus musculus BAC clone RP24-471B11 from chromosom... 36 4.8 7
(AP007664) Lotus japonicus genomic DNA, chromosome 1, clone:... 40 4.8 5
(AP009874) Lotus japonicus genomic DNA, chromosome 4, clone:... 42 4.9 3
(AC215363) Solanum lycopersicum chromosome 2 clone C02HBa003... 36 5.0 4
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 5.2 25
(L34027) Plasmodium falciparum (clone Dd2) heat shock protei... 32 5.4 4
(AC018740) Homo sapiens chromosome 8 clone RP11-449M6, WORKI... 36 5.4 6
(AC220959) Pongo abelii chromosome 5 clone CH276-371K23, WOR... 34 5.6 2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 5.6 17
(BX321900) Zebrafish DNA sequence from clone DKEYP-27C2 in l... 34 5.6 6
(AL606610) Oryza sativa genomic DNA, chromosome 4, BAC clone... 40 5.6 4
(AL592494) Human DNA sequence from clone RP11-344P13 on chro... 34 5.7 2
(CU796164) A BAC library has been constructed from PN40024 g... 34 5.8 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 5.8 11
(AC119967) Mus musculus chromosome 10, clone RP24-473K14, co... 34 5.9 7
(AC216770) Populus trichocarpa clone POP051-A24, complete se... 42 5.9 8
(AC209588) Solanum lycopersicum DNA sequence from clone LE_H... 38 6.1 7
(BE248645) NF022F04DT1F1032 Drought Medicago truncatula cDNA... 42 6.1 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 6.3 17
(AC024328) Homo sapiens clone RP11-30O23, LOW-PASS SEQUENCE ... 40 6.4 3
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 36 6.4 7
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 6.5 10
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 6.6 13
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 34 6.7 19
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 32 7.0 11
(CP000988) Borrelia duttonii Ly plasmid pl41, partial sequence. 34 7.0 5
(CR388214) Zebrafish DNA sequence from clone CH211-269E4 in ... 34 7.1 6
(CU915447) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.2 5
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 7.4 13
(CX535461) s13dNF86F05MJ047_389091 Methyl Jasmonate-Elicited... 42 7.5 2
(ER324679) 1092344201423 Global-Ocean-Sampling_GS-34-01-01-1... 34 7.5 2
(ER331473) 1092344266764 Global-Ocean-Sampling_GS-34-01-01-1... 34 7.6 2
(EJ599095) 1092961119891 Global-Ocean-Sampling_GS-29-01-01-1... 32 7.6 2
(EH683751) CCIL8440.b1_P22.ab1 CCI(LMS) chicory Cichorium in... 34 7.6 2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 36 7.6 11
(BQ138568) NF004F10PH1F1089 Phoma-infected Medicago truncatu... 42 7.8 2
(AC144354) Homo sapiens chromosome 5 clone RP13-841G21, WORK... 36 7.9 10
(CU855875) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 8.0 5
(BD061520) Genome DNA of symbiotic bacteria of aphid. 36 8.0 15
(AR409405) Sequence 1 from patent US 6632935. 36 8.0 15
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 36 8.0 15
(AC141402) Homo sapiens chromosome 16 clone RP11-1250D4, WOR... 34 8.1 6
(EH813723) EBENXNS01BVSOQ 8-day Arabidopsis seedlings, aeria... 36 8.1 2
(AL390883) Human DNA sequence from clone RP11-230N22 on chro... 36 8.1 3
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 36 8.1 15
(AM467461) Vitis vinifera contig VV78X147813.7, whole genome... 34 8.2 4
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 30 8.2 21
(EG314766) MSAM272530_2191_0331 LCM-dissected maize inbred l... 34 8.3 2
(CX528798) s13dNF08C05MJ034_243664 Methyl Jasmonate-Elicited... 42 8.3 2
(AP001537) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 34 8.4 6
(AC190027) Glycine max clone gmp1-134b7, WORKING DRAFT SEQUE... 38 8.5 6
(AC096717) Homo sapiens BAC clone RP11-10O3 from 4, complete... 38 8.5 6
(AM459285) Vitis vinifera contig VV78X047451.5, whole genome... 38 8.6 4
(ET643541) JBVRF43TF JBVR Allium cepa genomic clone JBVRC_RD... 34 8.6 3
(AL512489) Human DNA sequence from clone RP11-447O8 on chrom... 44 8.9 3
(AF270939) Heterodoxus macropus mitochondrion, complete genome. 30 9.0 6
(AC024600) Homo sapiens chromosome 10 clone RP11-179K3, comp... 44 9.0 6
(CU469580) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 9.0 7
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 9.0 13
(AC135313) Medicago truncatula chromosome 8 clone mth2-7n18,... 32 9.1 6
(AM448418) Vitis vinifera contig VV78X244313.7, whole genome... 40 9.3 4
(AE017243) Mycoplasma hyopneumoniae J, complete genome. 34 9.3 19
(BZ398697) EINDJ20TF EI_10_12_KB Entamoeba invadens genomic ... 34 9.4 2
(AC131698) Mus musculus BAC clone RP23-428E12 from 3, comple... 32 9.4 9
(AX458577) Sequence 123 from Patent WO0246454. 34 9.4 7
(AW775082) EST334233 KV3 Medicago truncatula cDNA clone pKV3... 42 9.4 2
(AL954668) Zebrafish DNA sequence from clone BUSM1-179B16 in... 34 9.5 8
(EU850438) Adineta vaga hypothetical protein 18 gene, partia... 34 9.7 4
(CD419904) rj16e04.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel... 32 9.7 3
(AP010205) Lotus japonicus genomic DNA, clone: LjT05D15, TM1... 40 9.8 8
(CP000727) Clostridium botulinum A str. Hall, complete genome. 34 10.0 18

>(BJ431538) Dictyostelium discoideum cDNA clone:ddv14d17, 3' end,
single read.
Length = 679

Score = 1136 bits (573), Expect(2) = 0.0
Identities = 586/588 (99%)
Strand = Plus / Minus


Query: 458 gattcaaatcaagaagattattttaaatcaactaaaaacaattggattgttaatatcatt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gattcaaatcaagaagattattttaaatcaactaaaaacaattggattgttaatatcatt 620


Query: 518 ctaaatgttacacaaattcaagaaggaagaaagattgtattagataaagagaatcaaata 577
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctaaatgttacncaaattcaagaaggaagaaagattgtattagataaagagaatcaaata 560


Query: 578 tttaaagagattttaccattggttagacatgaaaatgttatcaagagaagaggtatcctt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttaaagagattttaccattggttagacatgaaaatgttatcaagagaagaggtatcctt 500


Query: 638 ggtataattagaaattgttgttactntgaacaacatcncgattatttaatatcnccagaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggtataattagaaattgttgttactntgaacaacatcncgattatttaatatcnccagaa 440


Query: 698 gttgatattctcactaaattatgtttaccaattagaggtaatgataaattggatgatgat 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gttgatattctcactaaattatgtttaccaattagaggtaatgataaattggatgatgat 380


Query: 758 gatttggttggtttacatatagatttacataattcttctttaccaattggtaatgaaaga 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatttggttggtttacatatagatttacataattcttctttaccaattggtaatgaaaga 320


Query: 818 gatcaagatagagaatgtagaaaaatggttgtagaatctttaatctttttaactggtact 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatcaagatagagaatgtagaaaaatggttgtagaatctttaatctttttaactggtact 260


Query: 878 aaaaaaggaagagtttcaatgagaactgctaaaatttatccaattttaagaaatttattt 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaaaaaggaagagtttcaatgagaactgctaaaatttatccaattttaagaaatttattt 200


Query: 938 aattttgaaactgaagaagaattacgtgataatgttgaaaaagttgttgagttaattatt 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aattttgaaactgaagaagaattacgtgataatgttgaaaaagttgttgagttaattatt 140


Query: 998 agagatgaagaaggtgatccaactccagaagaaattgaacaaatgaat 1045
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 139 agagatgaagaaggtgatccaacnccagaagaaattgaacaaatgaat 92

Score = 34.2 bits (17), Expect(2) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1058 ttagaagatgaagatgc 1074
|||||||||||||||||
Sbjct: 79 ttagaagatgaagatgc 63

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,685,055,674
Number of extensions: 117583892
Number of successful extensions: 10292608
Number of sequences better than 10.0: 363
Length of query: 1158
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1134
Effective length of database: 99,340,224,878
Effective search space: 112651815011652
Effective search space used: 112651815011652
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04328-1 (Contig-U04328-1Q) /CSM_Contig/Contig-U04328-1Q.Seq.d
(1158 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q76NW7) RecName: Full=UPF0570 protein; &AC117075_77(AC117075|p... 698 0.0
(Q6DGR4) RecName: Full=Brain protein 16; &BC076275_1(BC076275|p... 168 4e-40
BC154198_1(BC154198|pid:none) Danio rerio brain protein 16, mRNA... 168 4e-40
(Q6AY79) RecName: Full=Brain protein 16; &BC079158_1(BC079158|p... 145 4e-33
AB041552_1(AB041552|pid:none) Mus musculus brain cDNA, clone MNC... 138 3e-31
(Q66KK3) RecName: Full=Brain protein 16; &BC080354_1(BC080354|p... 131 5e-29
(Q10498) RecName: Full=UPF0570 protein C26F1.12c; &CU329670_213... 125 2e-27
(Q9VBG6) RecName: Full=UPF0570 protein CG6073; &AE014297_4094(A... 124 5e-27
(Q297A7) RecName: Full=UPF0507 protein GA19338; 124 8e-27
CR382139_780(CR382139|pid:none) Debaryomyces hansenii strain CBS... 122 2e-26
CU638744_286(CU638744|pid:none) Podospora anserina genomic DNA c... 119 3e-25
AM920429_78(AM920429|pid:none) Penicillium chrysogenum Wisconsin... 118 4e-25
FN392322_542(FN392322|pid:none) Pichia pastoris GS115 chromosome... 117 1e-24
AC012188_6(AC012188|pid:none) Sequence of BAC F14L17 from Arabid... 113 1e-23
AP007165_83(AP007165|pid:none) Aspergillus oryzae RIB40 genomic ... 111 6e-23
AK117381_1(AK117381|pid:none) Arabidopsis thaliana At1g14300 mRN... 110 7e-23
AE016814_37(AE016814|pid:none) Ashbya gossypii (= Eremothecium g... 109 2e-22
AM432576_1(AM432576|pid:none) Vitis vinifera contig VV78X096190.... 108 5e-22
CR382126_666(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 106 1e-21
FM992691_180(FM992691|pid:none) Candida dubliniensis CD36 chromo... 104 5e-21
EF514212_29(EF514212|pid:none) Solanum tuberosum strain P6/210 c... 103 2e-20
EF514213_13(EF514213|pid:none) Solanum tuberosum strain P6/210 c... 102 3e-20
CR954208_234(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 100 2e-19
CR380950_233(CR380950|pid:none) Candida glabrata strain CBS138 c... 99 2e-19
BT037528_1(BT037528|pid:none) Zea mays full-length cDNA clone ZM... 99 4e-19
CU928174_448(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 98 6e-19
AP008216_560(AP008216|pid:none) Oryza sativa (japonica cultivar-... 91 8e-17
AC149301_15(AC149301|pid:none) Solanum demissum chromosome 5 clo... 90 2e-16
AE017353_78(AE017353|pid:none) Cryptococcus neoformans var. neof... 86 3e-15
FJ746637_1(FJ746637|pid:none) Piriformospora indica DNA binding ... 77 1e-12
AK098226_1(AK098226|pid:none) Homo sapiens cDNA FLJ40907 fis, cl... 60 2e-07
CT005270_242(CT005270|pid:none) Leishmania major strain Friedlin... 52 5e-05
AC024818_1(AC024818|pid:none) Caenorhabditis elegans cosmid Y54H... 45 0.005
BT045980_1(BT045980|pid:none) Salmo salar clone ssal-rgf-538-157... 45 0.006
AY952205_1(AY952205|pid:none) Aplysia californica beta-catenin m... 40 0.21
AY539935_1(AY539935|pid:none) Rattus norvegicus LRRGT00184 mRNA,... 38 0.60
AM494970_233(AM494970|pid:none) Leishmania braziliensis chromoso... 38 0.60
AC146571_10(AC146571|pid:none) Medicago truncatula clone mth2-10... 38 0.60
(Q26626) RecName: Full=Kinesin-associated protein 3; AltName: Fu... 38 0.79
(Q02453) RecName: Full=Armadillo segment polarity protein; &L04... 37 1.0
AC004255_16(AC004255|pid:none) Arabidopsis thaliana BAC T1F9 chr... 37 1.0
AE014298_297(AE014298|pid:none) Drosophila melanogaster chromoso... 37 1.0
(P18824) RecName: Full=Armadillo segment polarity protein; &AE0... 37 1.0
(Q29I35) RecName: Full=Armadillo segment polarity protein; 37 1.0
FB813759_1(FB813759|pid:none) Sequence 33032 from Patent WO20080... 37 1.3
AK220690_1(AK220690|pid:none) Arabidopsis thaliana mRNA for hypo... 37 1.3
AK017008_1(AK017008|pid:none) Mus musculus adult male testis cDN... 37 1.8
AB120624_1(AB120624|pid:none) Achaearanea tepidariorum arm mRNA ... 37 1.8
CP000745_468(CP000745|pid:none) Methanococcus maripaludis C7, co... 37 1.8
CP000609_364(CP000609|pid:none) Methanococcus maripaludis C5, co... 36 2.3
BX950229_1226(BX950229|pid:none) Methanococcus maripaludis strai... 36 3.0
AE017262_764(AE017262|pid:none) Listeria monocytogenes str. 4b F... 36 3.0
(Q922E6) RecName: Full=FAST kinase domain-containing protein 2; ... 35 3.9
AY809250_1(AY809250|pid:none) Schistosoma japonicum SJCHGC08850 ... 35 3.9
AK297368_1(AK297368|pid:none) Homo sapiens cDNA FLJ54024 complet... 35 5.1
(Q7QHW5) RecName: Full=Armadillo segment polarity protein; 35 5.1
AK133957_1(AK133957|pid:none) Mus musculus 8 days embryo whole b... 35 5.1
(Q9BT43) RecName: Full=DNA-directed RNA polymerase III subunit R... 35 5.1
AP003512_10(AP003512|pid:none) Oryza sativa Japonica Group genom... 35 5.1
CR859569_1(CR859569|pid:none) Pongo abelii mRNA; cDNA DKFZp459D0... 35 5.1
AK301912_1(AK301912|pid:none) Homo sapiens cDNA FLJ53234 complet... 35 5.1
CP000813_1909(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 35 5.1
BC105229_1(BC105229|pid:none) Bos taurus kinesin-associated prot... 35 5.1
(P70188) RecName: Full=Kinesin-associated protein 3; Sh... 35 5.1
AL121714_1(AL121714|pid:none) Human DNA sequence from clone RP1-... 35 5.1
AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 35 6.7
AE017245_319(AE017245|pid:none) Mycoplasma synoviae 53, complete... 35 6.7
BA000028_1756(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 34 8.7
AM270324_15(AM270324|pid:none) Aspergillus niger contig An14c017... 34 8.7
CR860397_1(CR860397|pid:none) Pongo abelii mRNA; cDNA DKFZp459J0... 34 8.7

>(Q76NW7) RecName: Full=UPF0570 protein;
&AC117075_77(AC117075|pid:none)
Length = 355

Score = 698 bits (1802), Expect = 0.0
Identities = 352/354 (99%), Positives = 352/354 (99%)
Frame = +2

Query: 32 MDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIKLITDSNHVVV 211
MDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIKLITDSNHVVV
Sbjct: 1 MDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIKLITDSNHVVV 60

Query: 212 RHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLS 391
RHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLS
Sbjct: 61 RHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLS 120

Query: 392 LMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQEGRKIVLDKEN 571
LMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQEGRKIVLDKEN
Sbjct: 121 LMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQEGRKIVLDKEN 180

Query: 572 QIFKEILPLVRHENVIKRRGILGIIRNCCYXEQHXDYLISPEVDILTKLCLPIRGNDKLD 751
QIFKEILPLVRHENVIKRRGILGIIRNCCY EQH DYLISPEVDILTKLCLPIRGNDKLD
Sbjct: 181 QIFKEILPLVRHENVIKRRGILGIIRNCCYSEQHHDYLISPEVDILTKLCLPIRGNDKLD 240

Query: 752 DDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMRTAKIYPILRN 931
DDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMRTAKIYPILRN
Sbjct: 241 DDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMRTAKIYPILRN 300

Query: 932 LFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQFETDE 1093
LFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQFETDE
Sbjct: 301 LFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQFETDE 354

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,273,728,861
Number of extensions: 22554402
Number of successful extensions: 76547
Number of sequences better than 10.0: 70
Number of HSP's gapped: 75473
Number of HSP's successfully gapped: 71
Length of query: 386
Length of database: 1,061,185,681
Length adjustment: 130
Effective length of query: 256
Effective length of database: 636,287,441
Effective search space: 162889584896
Effective search space used: 162889584896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.65 gvh: 0.53 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U04328-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0