Contig-U04312-1
Contig ID Contig-U04312-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Contig-U04312-1Q.Seq.d
GTAAAAATAAATAAACAAACAAATAAAATTTTATAAATTTCACAATTCTA
GTTAATAAACATTCACCACAACATAATATAAAATAAAATAAAATAAAAAA
GATAAAAAATAAAAAATAATAAAAAAATGACAAAAACAGAAACTAAAGTA
GAACCAAAAGCAGAGGTCAAACCAAAAGAAGATAATGTAGAAGTTATTGA
AGATGATGAATTTGAAGAGTTTGAAGATAATATGGCCGAAGGCGAAGATA
ACTCAAAAGAACAATGGGAAGATGATTGGGATACTGATAAAATTGATGAC
GATTTTTCAAAACAATTAAGAGCTGAAATTGAATCCCACTCAACCATGAA
ATCATAAATAGAAATAATAATAAAAAAAAATATAGGAATAAAAAAAAAAT
AAAAAAAATAAAAAAAAAAAGAAAAAACTAAAAAATATAAATTGTAAAAA
AAAAAAAAAA

Gap no gap
Contig length 460
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 530520
End point 530980
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U04312
List of clone(s)

est1=SSA127E,1,461
est2=SSM569E,1,403
Translated Amino Acid sequence
vkinkqtnkil*isqf*linihhnii*nkik*kr*KIKNNKKMTKTETKVEPKAEVKPKE
DNVEVIEDDEFEEFEDNMAEGEDNSKEQWEDDWDTDKIDDDFSKQLRAEIESHSTMKS*i
eiiikknigikkk*kk*kkkektkkykl*kkkk


Translated Amino Acid sequence (All Frames)
Frame A:
vkinkqtnkil*isqf*linihhnii*nkik*kr*KIKNNKKMTKTETKVEPKAEVKPKE
DNVEVIEDDEFEEFEDNMAEGEDNSKEQWEDDWDTDKIDDDFSKQLRAEIESHSTMKS*i
eiiikknigikkk*kk*kkkektkkykl*kkkk


Frame B:
*k*inkqikfykfhnss**tfttt*ykik*nkkdkk*kiikk*qkqklk*nqkqrsnqkk
im*kllkmmnlkslkiiwpkakitqknngkmigiliklmtifqnn*elklnptqp*nhk*
k***kki*e*kknkknkkkkkklkninckkkkk


Frame C:
knk*tnk*nfinftilvnkhspqhnik*nkikkiknkk**kndknrn*srtksrgqtkrr
*crsy*r**i*rv*r*ygrrrr*lkrtmgr*lgy**n**rffktiks*n*iplnheiinr
nnnkkkyrnkkkikkikkkrkn*ki*ivkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04312-1 (Contig-U04312-1Q)
/CSM_Contig/Contig-U04312-1Q.Seq.d
(460 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Conti... 466 e-131
Contig-U11185-1 (Contig-U11185-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U12590-1 (Contig-U12590-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U11089-1 (Contig-U11089-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U09703-1 (Contig-U09703-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U04016-1 (Contig-U04016-1Q) /CSM_Contig/Conti... 36 0.032

>Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Contig-U04312-1Q.Seq.d
Length = 460

Score = 466 bits (235), Expect = e-131
Identities = 235/235 (100%)
Strand = Plus / Plus


Query: 137 cagaaactaaagtagaaccaaaagcagaggtcaaaccaaaagaagataatgtagaagtta 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cagaaactaaagtagaaccaaaagcagaggtcaaaccaaaagaagataatgtagaagtta 196


Query: 197 ttgaagatgatgaatttgaagagtttgaagataatatggccgaaggcgaagataactcaa 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttgaagatgatgaatttgaagagtttgaagataatatggccgaaggcgaagataactcaa 256


Query: 257 aagaacaatgggaagatgattgggatactgataaaattgatgacgatttttcaaaacaat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagaacaatgggaagatgattgggatactgataaaattgatgacgatttttcaaaacaat 316


Query: 317 taagagctgaaattgaatcccactcaaccatgaaatcataaatagaaataataat 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taagagctgaaattgaatcccactcaaccatgaaatcataaatagaaataataat 371


Score = 67.9 bits (34), Expect = 9e-12
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 39 ttcacaattctagttaataaacattcaccacaac 72
||||||||||||||||||||||||||||||||||
Sbjct: 39 ttcacaattctagttaataaacattcaccacaac 72


>Contig-U11185-1 (Contig-U11185-1Q) /CSM_Contig/Contig-U11185-1Q.Seq.d
Length = 961

Score = 44.1 bits (22), Expect = 1e-04
Identities = 25/26 (96%)
Strand = Plus / Minus


Query: 201 agatgatgaatttgaagagtttgaag 226
|||||| |||||||||||||||||||
Sbjct: 695 agatgaagaatttgaagagtttgaag 670


>Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Contig-U03115-1Q.Seq.d
Length = 1397

Score = 44.1 bits (22), Expect = 1e-04
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 197 ttgaagatgatgaatttgaaga 218
||||||||||||||||||||||
Sbjct: 1270 ttgaagatgatgaatttgaaga 1249


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4112
Number of Sequences: 6905
Number of extensions: 4112
Number of successful extensions: 580
Number of sequences better than 10.0: 209
length of query: 460
length of database: 5,674,871
effective HSP length: 16
effective length of query: 444
effective length of database: 5,564,391
effective search space: 2470589604
effective search space used: 2470589604
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.15
Homology vs DNA
Query= Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Contig-U04312-1Q.Seq.d
(460 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C93113) Dictyostelium discoideum slug cDNA, clone SSM569. 329 5e-86 1
(C24629) Dictyostelium discoideum slug cDNA, clone SL-X027. 208 3e-79 2
(DY835432) CTOZ2177.b1_A18.ab1 CTO(XYZ) dandelion Taraxacum ... 46 2e-06 2
(CA910640) PCSC10898 Scarlet Runner Bean Suspensor Region Tr... 48 5e-06 2
(CK721143) tad66a08.y2 Hydra EST -Kiel 1 Hydra vulgaris cDNA... 46 5e-06 2
(CB895107) EST647899 HOGA Medicago truncatula cDNA clone HOG... 48 5e-06 2
(CN564215) tag17f04.x1 Hydra EST -Kiel 1 Hydra vulgaris cDNA... 46 6e-06 2
(EL409148) CFFS6814.b1_K24.ab1 CFF(LMS) safflower Carthamus ... 46 6e-06 2
(DY615602) AC0686 NOLLY Medicago truncatula cDNA 5', mRNA se... 48 6e-06 2
(GE349477) MEUAC47TR JCVI-MT2 Medicago truncatula cDNA 3', m... 48 7e-06 2
(GE344401) MEUAC47TF JCVI-MT2 Medicago truncatula cDNA 5', m... 48 7e-06 2
(AL380179) Medicago truncatula EST MtBB50H07F1 : T3 end of c... 48 7e-06 2
(AL388500) Medicago truncatula EST MtBC48H09F2 : T3 end of c... 48 7e-06 2
(BF638157) NF044F09PL1F1077 Phosphate starved leaf Medicago ... 48 7e-06 2
(BG456468) NF081A11PL1F1083 Phosphate starved leaf Medicago ... 48 7e-06 2
(AL380180) Medicago truncatula EST MtBB50H07R1 : T7 end of c... 48 7e-06 2
(BE941765) EST421344 MGHG Medicago truncatula cDNA clone pMG... 48 8e-06 2
(BG453719) NF100F12LF1F1096 Developing leaf Medicago truncat... 48 8e-06 2
(BG582859) EST484605 GVN Medicago truncatula cDNA clone pGVN... 48 8e-06 2
(EV260465) MTYE805TF JCVI-MT1 Medicago truncatula cDNA 5', m... 48 8e-06 2
(AL387903) Medicago truncatula EST MtBC45E04R1 : T7 end of c... 48 8e-06 2
(BT050990) Medicago truncatula clone MTYFD_FE_FF_FG1G-K-22 m... 48 8e-06 2
(DY616263) AC1719 NOLLY Medicago truncatula cDNA 5', mRNA se... 48 8e-06 2
(AL388501) Medicago truncatula EST MtBC48H09R1 : T7 end of c... 48 8e-06 2
(BE997860) EST429583 GVSN Medicago truncatula cDNA clone pGV... 48 8e-06 2
(EV256483) MTYCX44TF JCVI-MT1 Medicago truncatula cDNA 5', m... 48 8e-06 2
(BE943040) EST422619 MGHG Medicago truncatula cDNA clone pMG... 48 9e-06 2
(BG452259) NF085D06LF1F1058 Developing leaf Medicago truncat... 48 9e-06 2
(BG584880) EST486641 MHAM Medicago truncatula/Glomus versifo... 48 9e-06 2
(BI263710) NF089D11PL1F1094 Phosphate starved leaf Medicago ... 48 9e-06 2
(BE941306) EST420885 MGHG Medicago truncatula cDNA clone pMG... 48 1e-05 2
(BQ150203) NF012A06LF1F1040 Developing leaf Medicago truncat... 48 1e-05 2
(DY839008) CTOZ563.b1_F21.ab1 CTO(XYZ) dandelion Taraxacum o... 46 2e-05 3
(DY836723) CTOZ3485.b1_I07.ab1 CTO(XYZ) dandelion Taraxacum ... 46 2e-05 3
(CA910641) PCSC17517 Scarlet Runner Bean Suspensor Region Tr... 44 7e-05 2
(EB698619) NecGex_351D02 Ornamental tobacco (LxS8) post-fert... 42 1e-04 2
(EB689177) NecGex_116E09 Ornamental tobacco (LxS8) Stage 6 F... 42 1e-04 2
(EL565621) Physarum05698 Physarum polycephalum starvation st... 42 3e-04 2
(EH708675) CCIS7974.b1_L02.ab1 CCI(LMS) chicory Cichorium in... 46 3e-04 2
(EH750410) CNMS9761.b1_B17.ab1 CNM(LMS) spotted knapweed Cen... 46 4e-04 2
(EH738690) CNMS12121.b1_A08.ab1 CNM(LMS) spotted knapweed Ce... 46 5e-04 2
(EH746662) CNMS6140.b1_H24.ab1 CNM(LMS) spotted knapweed Cen... 46 5e-04 2
(EH738263) CNMS11731.b1_E06.ab1 CNM(LMS) spotted knapweed Ce... 46 5e-04 2
(FG230217) pvreabc010006_G11_M13rev_phred13_vc root hairs of... 48 8e-04 2
(FG230158) pvreabc010006_D12_M13rev_phred13_vc root hairs of... 48 8e-04 2
(FG230081) pvreabc010005_P19_M13rev_phred13_vc root hairs of... 48 8e-04 2
(FG230078) pvreabc010005_P15_M13rev_phred13_vc root hairs of... 48 8e-04 2
(FG229998) pvreabc010005_L15_M13rev_phred13_vc root hairs of... 48 8e-04 2
(DN250842) ACAB-aab18m03.g1 Hydra UCI6- barcoded EST's Hydra... 40 9e-04 2
(BP748741) Nicotiana sylvestris mRNA, expressed in leaf, clo... 42 0.001 2
(CN559205) tad69a08.y1 Hydra EST Darmstadt I Hydra magnipapi... 40 0.001 2
(DY841184) CTOZ7650.b1_D18.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(BP523663) Hydra magnipapillata cDNA, clone:hmp_21864. 40 0.001 2
(DB927148) Manihot esculenta mRNA, clone: CAS01_020_L03, 5'end. 40 0.001 2
(BP509881) Hydra magnipapillata cDNA, clone:hmp_04993. 40 0.001 2
(BP512675) Hydra magnipapillata cDNA, clone:hmp_08492. 40 0.001 2
(BP512481) Hydra magnipapillata cDNA, clone:hmp_08216. 40 0.001 2
(BP521476) Hydra magnipapillata cDNA, clone:hmp_19123. 40 0.001 2
(BP512850) Hydra magnipapillata cDNA, clone:hmp_08744. 40 0.001 2
(BP520640) Hydra magnipapillata cDNA, clone:hmp_18072. 40 0.001 2
(DW164148) CLVY2673.b1_B22.ab1 CLV(XYZ) lettuce virosa Lactu... 46 0.001 2
(DW163972) CLVY2495.b1_N23.ab1 CLV(XYZ) lettuce virosa Lactu... 46 0.001 2
(BP509057) Hydra magnipapillata cDNA, clone:hmp_03752. 40 0.001 2
(DW105114) CLRX2929.b1_A14.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.001 2
(DB921263) Manihot esculenta mRNA, clone: CAS01_004_G13, 5'end. 40 0.001 2
(DY836915) CTOZ3683.b1_E10.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(DV442681) CV01007B2E05.f1 CV01-normalized library Manihot e... 40 0.001 2
(DY835551) CTOZ2298.b1_D24.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(DY811136) CTOX19831.b1_M14.ab1 CTO(XYZ) dandelion Taraxacum... 46 0.001 2
(DR989017) HDI_F_25.esd Horsegram (VZM-1) drought stressed s... 48 0.001 2
(DY840529) CTOZ7052.b1_H11.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(DY838415) CTOZ5084.b1_G23.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(DV448400) CV01024B1F01.f1 CV01-normalized library Manihot e... 40 0.001 2
(DY838992) CTOZ5615.b1_M12.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(EC609007) LatexY03C11 YLX600 Hevea brasiliensis cDNA clone ... 40 0.001 2
(DW000900) KL4B.109F05F.051105T7 KL4B Nicotiana tabacum cDNA... 42 0.001 2
(DY810966) CTOX19663.b1_M19.ab1 CTO(XYZ) dandelion Taraxacum... 46 0.001 2
(DY840892) CTOZ7383.b1_M21.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.001 2
(DB930067) Manihot esculenta mRNA, clone: CAS01_028_M12, 5'end. 40 0.001 2
(GE650032) UCRVU08_CCNS491_g1 Cowpea IT97K-461-4 Mixed Tissu... 48 0.001 2
(DW068621) CLLY8404.b1_H14.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.001 2
(EB432197) KL5B.116L18F.060217T7 KL5B Nicotiana tabacum cDNA... 42 0.001 2
(DB950291) Manihot esculenta mRNA, clone: CAS01_036_K13, 3'end. 40 0.001 2
(DB939193) Manihot esculenta mRNA, clone: CAS01_002_C13, 3'end. 40 0.001 2
(DW071714) CLLZ3119.b1_M11.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.001 2
(DW069105) CLLY8904.b1_O17.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.001 2
(DW068789) CLLY8579.b2_F09.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.001 2
(DB931941) Manihot esculenta mRNA, clone: CAS01_033_O05, 5'end. 40 0.001 2
(DW161065) CLVY1310.b1_L15.ab1 CLV(XYZ) lettuce virosa Lactu... 46 0.001 2
(DW144033) CLSZ3300.b1_G10.ab1 CLS(XYZ) lettuce sativa Lactu... 46 0.001 2
(DW069415) CLLY9223.b1_M01.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.001 2
(DW103216) CLPZ583.b1_M02.ab1 CLP(XYZ) lettuce perennis Lact... 46 0.001 2
(CV699959) PJS-02-H12-T7 Subtractive cDNA library specific f... 46 0.001 2
(DB942071) Manihot esculenta mRNA, clone: CAS01_011_C04, 3'end. 40 0.001 2
(DB923704) Manihot esculenta mRNA, clone: CAS01_011_C04, 5'end. 40 0.001 2
(DW075045) CLPX10793.b1_A11.ab1 CLP(XYZ) lettuce perennis La... 46 0.001 2
(DW146308) CLVX11422.b1_K24.ab1 CLV(XYZ) lettuce virosa Lact... 46 0.001 2
(EV520229) JB2_19_H07 Castor seed endosperm Ricinus communis... 40 0.001 2
(DB932605) Manihot esculenta mRNA, clone: CAS01_035_L10, 5'end. 40 0.001 2
(DY983977) CLSS6570.b1_C11.ab1 CLS(LMS) lettuce sativa Lactu... 46 0.001 2
(DB920463) Manihot esculenta mRNA, clone: CAS01_002_C13, 5'end. 40 0.001 2
(DB946379) Manihot esculenta mRNA, clone: CAS01_024_J19, 3'end. 40 0.001 2
(DB953943) Manihot esculenta mRNA, clone: CAS01_048_C15, 3'end. 40 0.001 2
(DB945176) Manihot esculenta mRNA, clone: CAS01_020_L03, 3'end. 40 0.001 2
(DW118096) CLRY6765.b1_I12.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.002 2
(DB949776) Manihot esculenta mRNA, clone: CAS01_035_C12, 3'end. 40 0.002 2
(DB939918) Manihot esculenta mRNA, clone: CAS01_004_G13, 3'end. 40 0.002 2
(DV442988) CV01008B2D09.f1 CV01-normalized library Manihot e... 40 0.002 2
(FG635783) TT-06_O04 Samsun trichome library Nicotiana tabac... 42 0.002 2
(DB950631) Manihot esculenta mRNA, clone: CAS01_037_L14, 3'end. 40 0.002 2
(DB933349) Manihot esculenta mRNA, clone: CAS01_037_L14, 5'end. 40 0.002 2
(BP958802) Euphorbia tirucalli mRNA, clone: ETC065B01, 5' end. 40 0.002 2
(FF764988) XABT69388.fwd Gateway compatible cien cDNA librar... 48 0.002 2
(FF764987) XABT69388.rev Gateway compatible cien cDNA librar... 48 0.002 2
(DW070776) CLLZ2150.b1_K10.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.002 2
(DB953256) Manihot esculenta mRNA, clone: CAS01_045_P24, 3'end. 40 0.002 2
(DB936377) Manihot esculenta mRNA, clone: CAS01_045_P24, 5'end. 40 0.002 2
(DB932955) Manihot esculenta mRNA, clone: CAS01_036_K13, 5'end. 40 0.002 2
(DB928550) Manihot esculenta mRNA, clone: CAS01_024_J19, 5'end. 40 0.002 2
(DB937121) Manihot esculenta mRNA, clone: CAS01_048_C15, 5'end. 40 0.002 2
(DW082642) CLPX5439.b1_M15.ab1 CLP(XYZ) lettuce perennis Lac... 46 0.002 2
(FE670358) mh2_0027_A09 Chickpea leave library Cicer arietin... 48 0.002 2
(DB932403) Manihot esculenta mRNA, clone: CAS01_035_C12, 5'end. 40 0.002 2
(DB949963) Manihot esculenta mRNA, clone: CAS01_035_L10, 3'end. 40 0.002 2
(DW124778) CLSX1260.b1_H03.ab1 CLS(XYZ) lettuce sativa Lactu... 46 0.002 2
(DW050748) CLLX3533.b1_I19.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.002 2
(DW043853) CLLX10280.b1_P02.ab1 CLL(XYZ) lettuce saligna Lac... 46 0.002 2
(FF535649) CASRF85TF CASR Manihot esculenta cDNA 5', mRNA se... 40 0.002 2
(AV860852) Ciona intestinalis cDNA, clone:rcicl21n07, 3' end... 48 0.003 2
(AV849782) Ciona intestinalis cDNA, clone:rcicl13n18, 3' end... 48 0.004 2
(BW199557) Ciona intestinalis cDNA, clone:cicl071i06, 5' end... 48 0.004 2
(BW074694) Ciona intestinalis cDNA, clone:rcieg063i18, 3' en... 48 0.004 2
(BW109236) Ciona intestinalis cDNA, clone:rcicl071i06, 3' en... 48 0.004 2
(DW142643) CLSZ1898.b1_D20.ab1 CLS(XYZ) lettuce sativa Lactu... 46 0.004 2
(AV960201) Ciona intestinalis cDNA, clone:ciad09j05, 5' end,... 48 0.004 2
(DY958482) CHPZ628.b1_G14.ab1 CHP(XYZ) plains sunflower Heli... 38 0.004 2
(DW100730) CLPZ3418.b1_D16.ab1 CLP(XYZ) lettuce perennis Lac... 46 0.004 2
(DW100658) CLPZ3328.b1_O16.ab1 CLP(XYZ) lettuce perennis Lac... 46 0.004 2
(BW063224) Ciona intestinalis cDNA, clone:rciad088g06, 3' en... 48 0.004 2
(BW107053) Ciona intestinalis cDNA, clone:rcicl040i06, 3' en... 48 0.005 2
(BW189713) Ciona intestinalis cDNA, clone:ciad088g06, 5' end... 48 0.005 2
(BW492312) Ciona intestinalis cDNA, clone:cima032g02, 3'end,... 48 0.005 2
(BW490713) Ciona intestinalis cDNA, clone:cima002m07, 3'end,... 48 0.005 2
(BW488822) Ciona intestinalis cDNA, clone:cima001h10, 3'end,... 48 0.005 2
(BW458355) Ciona intestinalis cDNA, clone:cijv028g03, 3'end,... 48 0.005 2
(AV960788) Ciona intestinalis cDNA, clone:cicl13n18, 5' end,... 48 0.005 2
(BW488823) Ciona intestinalis cDNA, clone:cima001h12, 3'end,... 48 0.005 2
(BW210211) Ciona intestinalis cDNA, clone:cieg063i18, 5' end... 48 0.005 2
(DW126947) CLSX3509.b1_I13.ab1 CLS(XYZ) lettuce sativa Lactu... 46 0.005 2
(BW409603) Ciona intestinalis cDNA, clone:cima806l23, 3'end,... 48 0.005 2
(DW174080) CLVZ5078.b1_K21.ab1 CLV(XYZ) lettuce virosa Lactu... 46 0.005 2
(BW151689) Ciona intestinalis cDNA, clone:rcigd016e08, 3' en... 48 0.005 2
(AJ494136) Ciona intestinalis EST, clone CION00614. 48 0.005 2
(BW483484) Ciona intestinalis cDNA, clone:cima032g02, 5'end,... 48 0.005 2
(CD848714) DH0AC010ZD10FM1 HaDevR2 Helianthus annuus cDNA cl... 38 0.005 2
(BW196430) Ciona intestinalis cDNA, clone:cicl039i06, 5' end... 48 0.005 2
(BW198264) Ciona intestinalis cDNA, clone:cicl067b18, 5' end... 48 0.005 2
(AV970467) Ciona intestinalis cDNA, clone:cicl18m12, 5' end,... 48 0.005 2
(AV859280) Ciona intestinalis cDNA, clone:rcicl18m12, 3' end... 48 0.005 2
(BW204188) Ciona intestinalis cDNA, clone:cicl086o02, 5' end... 48 0.005 2
(BW199067) Ciona intestinalis cDNA, clone:cicl069n11, 5' end... 48 0.005 2
(BW121603) Ciona intestinalis cDNA, clone:rcitb091a17, 3' en... 48 0.005 2
(AV967291) Ciona intestinalis cDNA, clone:cicl11c15, 5' end,... 48 0.005 2
(BW475768) Ciona intestinalis cDNA, clone:cima001h10, 5'end,... 48 0.005 2
(EL490367) CHUS5456.b1_O19.ab1 CHU(LMS) puzzle sunflower Hel... 38 0.005 2
(BW434288) Ciona intestinalis cDNA, clone:cijv028g03, 5'end,... 48 0.005 2
(BW195209) Ciona intestinalis cDNA, clone:cicl034i21, 5' end... 48 0.005 2
(FF994286) CBWU111142.b1 Yutaka Satou unpublished cDNA libra... 48 0.005 2
(BW154392) Ciona intestinalis cDNA, clone:rcigd023g08, 3' en... 48 0.005 2
(DW156997) CLVX9058.b1_C10.ab1 CLV(XYZ) lettuce virosa Lactu... 46 0.005 2
(EV520190) JB2_54_B01 Castor seed endosperm Ricinus communis... 40 0.005 2
(BW420737) Ciona intestinalis cDNA, clone:cima838b15, 3'end,... 48 0.005 2
(BW281215) Ciona intestinalis cDNA, clone:cigd016e08, 5' end... 48 0.005 2
(DY955481) CHPZ3010.b1_D10.ab1 CHP(XYZ) plains sunflower Hel... 38 0.005 2
(FG001241) CBWU116604.b1 Yutaka Satou unpublished cDNA libra... 48 0.005 2
(BW251740) Ciona intestinalis cDNA, clone:citb091a17, 5' end... 48 0.005 2
(BW492722) Ciona intestinalis cDNA, clone:cima033o13, 3'end,... 48 0.005 2
(DW081352) CLPX424.b1_O09.ab1 CLP(XYZ) lettuce perennis Lact... 46 0.005 2
(BW168788) Ciona intestinalis cDNA, clone:rcinc003d05, 3' en... 48 0.005 2
(BP015533) Ciona intestinalis cDNA, clone:ciad80o19, 5' end,... 48 0.005 2
(AV904930) Ciona intestinalis cDNA, clone:rciad80o19, 3' end... 48 0.005 2
(BW412142) Ciona intestinalis cDNA, clone:cima813p04, 3'end,... 48 0.005 2
(CD848681) DH0AC009ZH12FM1 HaDevR2 Helianthus annuus cDNA cl... 38 0.005 2
(BW499052) Ciona intestinalis cDNA, clone:cima048e03, 3'end,... 48 0.005 2
(BW420238) Ciona intestinalis cDNA, clone:cima836l08, 3'end,... 48 0.005 2
(AV978168) Ciona intestinalis cDNA, clone:cieg47m03, 5' end,... 48 0.005 2
(BW171588) Ciona intestinalis cDNA, clone:rcinc019g04, 3' en... 48 0.005 2
(BW476058) Ciona intestinalis cDNA, clone:cima002m07, 5'end,... 48 0.005 2
(BW399861) Ciona intestinalis cDNA, clone:ciem831j06, 3'end,... 48 0.005 2
(DW122576) CLRZ5005.b1_I03.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.005 2
(BW385973) Ciona intestinalis cDNA, clone:cidg840j13, 3'end,... 48 0.005 2
(BW355406) Ciona intestinalis cDNA, clone:cima806l23, 5'end,... 48 0.005 2
(BW173430) Ciona intestinalis cDNA, clone:rcinc027a21, 3' en... 48 0.005 2
(DW114443) CLRY2559.b1_M16.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.005 2
(CD852978) DH0AMM11ZC04ZZM1 HaDevR6 Helianthus annuus cDNA c... 38 0.005 2
(AV676333) Ciona intestinalis cDNA clone:rcitb4i21 : 3' end,... 48 0.005 2
(BW108830) Ciona intestinalis cDNA, clone:rcicl069n11, 3' en... 48 0.005 2
(BW404804) Ciona intestinalis cDNA, clone:ciem846i06, 3'end,... 48 0.006 2
(BW125162) Ciona intestinalis cDNA, clone:rcicl035c19, 3' en... 48 0.006 2
(AV879007) Ciona intestinalis cDNA, clone:rcicl56m15, 3' end... 48 0.006 2
(DW101305) CLPZ3998.b1_L15.ab1 CLP(XYZ) lettuce perennis Lac... 46 0.006 2
(BW453394) Ciona intestinalis cDNA, clone:cijv002l08, 3'end,... 48 0.006 2
(BW106809) Ciona intestinalis cDNA, clone:rcicl039i06, 3' en... 48 0.006 2
(AV990167) Ciona intestinalis cDNA, clone:cicl56m15, 5' end,... 48 0.006 2
(AV992603) Ciona intestinalis cDNA, clone:cicl59k01, 5' end,... 48 0.006 2
(BW483827) Ciona intestinalis cDNA, clone:cima033o13, 5'end,... 48 0.006 2
(BW255213) Ciona intestinalis cDNA, clone:cicl035c19, 5' end... 48 0.006 2
(BW158511) Ciona intestinalis cDNA, clone:rcigd035a09, 3' en... 48 0.006 2
(BW151830) Ciona intestinalis cDNA, clone:rcigd016k23, 3' en... 48 0.006 2
(BW066734) Ciona intestinalis cDNA, clone:rcicl100g14, 3' en... 48 0.006 2
(AV866758) Ciona intestinalis cDNA, clone:rcieg47m03, 3' end... 48 0.006 2
(AV863549) Ciona intestinalis cDNA, clone:rcieg36b16, 3' end... 48 0.006 2
(BW140499) Ciona intestinalis cDNA, clone:rcign038g20, 3' en... 48 0.006 2
(BW134935) Ciona intestinalis cDNA, clone:rcign039g20, 3' en... 48 0.006 2
(AV904746) Ciona intestinalis cDNA, clone:rciad80f23, 3' end... 48 0.006 2
(BW144781) Ciona intestinalis cDNA, clone:rcign069k22, 3' en... 48 0.006 2
(BW484876) Ciona intestinalis cDNA, clone:cima048e03, 5'end,... 48 0.006 2
(BW193315) Ciona intestinalis cDNA, clone:cicl100g14, 5' end... 48 0.006 2
(BW013369) Ciona intestinalis cDNA, clone:rcibd047p21, 3' en... 48 0.006 2
(AV874855) Ciona intestinalis cDNA, clone:rcicl50a06, 3' end... 48 0.006 2
(BW067767) Ciona intestinalis cDNA, clone:rcicl103l16, 3' en... 48 0.006 2
(BP015428) Ciona intestinalis cDNA, clone:ciad80f23, 5' end,... 48 0.006 2
(DW111640) CLRX8544.b1_O23.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.006 2
(AV860563) Ciona intestinalis cDNA, clone:rcicl20o11, 3' end... 48 0.006 2
(AV840514) Ciona intestinalis cDNA, clone:rcicl03j08, 3' end... 48 0.006 2
(BW068352) Ciona intestinalis cDNA, clone:rcicl034i21, 3' en... 48 0.006 2
(AV978971) Ciona intestinalis cDNA, clone:cieg51l24, 5' end,... 48 0.006 2
(AV867249) Ciona intestinalis cDNA, clone:rcieg50o10, 3' end... 48 0.006 2
(AV891803) Ciona intestinalis cDNA, clone:rciad26j04, 3' end... 48 0.006 2
(AV886152) Ciona intestinalis cDNA, clone:rcicl44c08, 3' end... 48 0.006 2
(BW298608) Ciona intestinalis cDNA, clone:cinc003d05, 5' end... 48 0.006 2
(BW274441) Ciona intestinalis cDNA, clone:cign069k22, 5' end... 48 0.006 2
(AV867434) Ciona intestinalis cDNA, clone:rcieg51l24, 3' end... 48 0.006 2
(BW429423) Ciona intestinalis cDNA, clone:cijv002l08, 5'end,... 48 0.006 2
(BW302711) Ciona intestinalis cDNA, clone:cinc027a21, 5' end... 48 0.006 2
(BW300702) Ciona intestinalis cDNA, clone:cinc019g04, 5' end... 48 0.006 2
(AV974807) Ciona intestinalis cDNA, clone:cieg36b16, 5' end,... 48 0.006 2
(BW041839) Ciona intestinalis cDNA, clone:cibd047p21, 5' end... 48 0.006 2
(AV978768) Ciona intestinalis cDNA, clone:cieg50o10, 5' end,... 48 0.006 2
(AV986773) Ciona intestinalis cDNA, clone:cicl50a06, 5' end,... 48 0.006 2
(BW366292) Ciona intestinalis cDNA, clone:cima838b15, 5'end,... 48 0.006 2
(BW194321) Ciona intestinalis cDNA, clone:cicl103l16, 5' end... 48 0.006 2
(BW264810) Ciona intestinalis cDNA, clone:cign039g20, 5' end... 48 0.006 2
(FG000620) CBWU116165.b1 Yutaka Satou unpublished cDNA libra... 48 0.006 2
(FF930402) CBWU67979.g1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(FF930401) CBWU67979.b1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(FF714150) XABT33598.fwd Gateway compatible cien cDNA librar... 48 0.006 2
(FF714149) XABT33598.rev Gateway compatible cien cDNA librar... 48 0.006 2
(FG000621) CBWU116165.g1 Yutaka Satou unpublished cDNA libra... 48 0.006 2
(AV961852) Ciona intestinalis cDNA, clone:cicl20o11, 5' end,... 48 0.006 2
(DW063768) CLLY3437.b1_J20.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.006 2
(FF941953) CBWU75540.g1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(FF941952) CBWU75540.b1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(FG001323) CBWU116662.g1 Yutaka Satou unpublished cDNA libra... 48 0.006 2
(FG001322) CBWU116662.b1 Yutaka Satou unpublished cDNA libra... 48 0.006 2
(FF993665) CBWU110708.b1 Yutaka Satou unpublished cDNA libra... 48 0.006 2
(FF907119) CBWU37966.b1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(FF905505) CBWU37000.g1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(FF905504) CBWU37000.b1 Yutaka Satou unpublished cDNA librar... 48 0.006 2
(BW345775) Ciona intestinalis cDNA, clone:ciem831j06, 5'end,... 48 0.006 2
(BW331871) Ciona intestinalis cDNA, clone:cidg840j13, 5'end,... 48 0.006 2
(BW357819) Ciona intestinalis cDNA, clone:cima813p04, 5'end,... 48 0.006 2
(AK113673) Ciona intestinalis cDNA, clone:cicl003j08, full i... 48 0.006 2
(BW264515) Ciona intestinalis cDNA, clone:cign038g20, 5' end... 48 0.006 2
(BW365804) Ciona intestinalis cDNA, clone:cima836l08, 5'end,... 48 0.006 2
(BW350772) Ciona intestinalis cDNA, clone:ciem846i06, 5'end,... 48 0.006 2
(AV950675) Ciona intestinalis cDNA, clone:cicl03j08, 5' end,... 48 0.006 2
(CD853021) DH0AMM11ZH05ZZM1 HaDevR6 Helianthus annuus cDNA c... 38 0.006 2
(CD852970) DH0AMM11ZB04ZZM1 HaDevR6 Helianthus annuus cDNA c... 38 0.006 2
(DW070195) CLLZ1169.b1_A05.ab1 CLL(XYZ) lettuce saligna Lact... 46 0.006 2
(AV997660) Ciona intestinalis cDNA, clone:cicl45g16, 5' end,... 48 0.006 2
(DW052580) CLLX527.b1_N11.ab1 CLL(XYZ) lettuce saligna Lactu... 46 0.006 2
(AV998633) Ciona intestinalis cDNA, clone:cicl46g08, 5' end,... 48 0.006 2
(CO907064) BJ02012C03 BJ02 Capsicum annuum cDNA 5', mRNA seq... 40 0.007 2
(CX659602) PO01032F10 Poplar SC cDNA library Populus alba x ... 48 0.008 2
(CX659594) PO01032E12 Poplar SC cDNA library Populus alba x ... 48 0.008 2
(BW424864) Ciona intestinalis cDNA, clone:cima850b08, 3'end,... 48 0.008 2
(EX282450) 1569544_5_E22_091 PY06 Carica papaya cDNA, mRNA s... 42 0.012 2
(BP530436) Nicotiana tabacum cDNA, clone: BY22071, primer: M... 40 0.013 2
(CA518328) KS10007G10 KS10 Capsicum annuum cDNA, mRNA sequence. 42 0.015 2
(AV971375) Ciona intestinalis cDNA, clone:cicl21n07, 5' end,... 46 0.018 2
(CA518618) KS10011F04 KS10 Capsicum annuum cDNA, mRNA sequence. 42 0.021 2
(AM808021) Nicotiana tabacum EST, clone nt005034026. 40 0.022 2
(BW686772) Solanum lycopersicum cDNA, clone: FC07AE06, 5' en... 38 0.022 2
(BP532662) Nicotiana tabacum cDNA, clone: BY28088, primer: M... 42 0.022 2
(FG634295) TT-37_E13 tobacco leaf library Nicotiana tabacum ... 42 0.023 2
(FD381335) CeSi_F10_T3_E01_007 Ceratonia siliqua flowers cDN... 40 0.026 2
(AK113138) Ciona intestinalis cDNA, clone:ciad009j05, full i... 48 0.032 2
(CD855356) DH0AMM5ZH04ZZM1 HaDevR6 Helianthus annuus cDNA cl... 38 0.041 2
(EX275210) 1456371_5_N09_035 PY06 Carica papaya cDNA, mRNA s... 42 0.042 2
(EX278039) 1564877_5_C11_046 PY06 Carica papaya cDNA, mRNA s... 42 0.044 2
(EX291159) 1579081_5_C07_030 PY06 Carica papaya cDNA, mRNA s... 42 0.044 2
(CO653954) 083d03 HlF HSS cDNA Humulus lupulus cDNA clone 08... 46 0.051 2
(BP532964) Nicotiana tabacum cDNA, clone: BY29014, primer: M... 42 0.058 2
(DW359443) PJ159 Prosopis juliflora leaf cDNA library Prosop... 46 0.065 2
(EH051962) THL24h-1237 cDNA library of Tamarix hispida leave... 40 0.065 2
(DY836478) CTOZ3236.b2_H17.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.067 2
(DY834490) CTOZ1216.b1_O15.ab1 CTO(XYZ) dandelion Taraxacum ... 46 0.069 2
(GD253226) HLUTR3CH_T3_055_A01_02AUG2006_015 HLUTR3CH Humulu... 46 0.069 2
(EH056810) THL52h-2294 cDNA library of Tamarix hispida leave... 40 0.070 2
(DW359694) PJ444 Prosopis juliflora leaf cDNA library Prosop... 46 0.072 2
(EZ033240) TSA: Acropora millepora SeqIndex61983, mRNA seque... 50 0.074 1
(DY587614) GS01YC05 Acropora millepora presettlement library... 50 0.074 1
(DY577582) A015-C4 Acropora millepora postsettlement library... 50 0.074 1
(DR985953) JGI_AOKG1817.fwd AOKG Acropora palmata spawned eg... 50 0.074 1
(DR985952) JGI_AOKG1817.rev AOKG Acropora palmata spawned eg... 50 0.074 1
(AJ792240) Antirrhinum majus EST, clone 018_2_10_p09. 38 0.079 2
(GE515699) CCFU1050.b1_C24.ab1 CCF(STU) sunflower Helianthus... 38 0.080 2
(DV442366) CV01007A1F06.f1 CV01-normalized library Manihot e... 38 0.080 2
(DV458967) CV02028B2E05.f1 CV02-normalized library Manihot e... 38 0.083 2
(FG634144) TT-13_B02 tobacco leaf library Nicotiana tabacum ... 42 0.086 2
(FG643975) TT-14_D06 K326 late senescent leaf library Nicoti... 42 0.087 2
(AM790456) Nicotiana tabacum EST, clone nt002076045. 42 0.089 2
(FG645328) TT-48_I19 K326 late senescent leaf library Nicoti... 42 0.089 2
(FG641599) TT-30_M01 K326 trichome library Nicotiana tabacum... 42 0.090 2
(FG641634) TT-29_J20 K326 trichome library Nicotiana tabacum... 42 0.090 2
(CN563568) tad69a08.x4 Hydra EST Darmstadt I Hydra magnipapi... 40 0.11 2
(GD247552) HLUTR2CH_T3_005_C08_07FEB2006_060 HLUTR2CH Humulu... 46 0.11 2
(FF395843) MOOEC60TR MOO Vigna unguiculata cDNA 3', mRNA seq... 40 0.12 2
(FK270884) 454GmaGlobSeed5516 Soybean Seeds Containing Globu... 40 0.14 2
(DV672248) CGN-7762 Pericarp Coffea canephora cDNA clone ccc... 36 0.22 2
(DV673858) CGN-10106 Pericarp Coffea canephora cDNA clone cc... 36 0.22 2
(FG812787) UCRVU04_CCNI1444_g1 Cowpea 524B Mixed Tissue and ... 40 0.23 2
(FG812786) UCRVU04_CCNI1444_b1 Cowpea 524B Mixed Tissue and ... 40 0.23 2
(DW145442) CLVX10525.b1_J15.ab1 CLV(XYZ) lettuce virosa Lact... 40 0.24 2
(AV677983) Ciona intestinalis cDNA clone:rcitb7d18 : 3' end,... 42 0.24 2
(BU672025) HaF537 Helianthus annuus Flower Helianthus annuus... 38 0.24 2
(BM885320) sal98c02.y1 Gm-c1063 Glycine max cDNA clone SOYBE... 40 0.25 2
(FG230441) pvreacc010001_C15_M13rev_phred13_vc root hairs of... 40 0.25 2
(BE023342) sm70f09.y1 Gm-c1028 Glycine max cDNA clone GENOME... 40 0.25 2
(FF398225) MOOFM56TF MOO Vigna unguiculata cDNA 5', mRNA seq... 40 0.25 2
(FG233779) pvrebbc010002_N14_M1321_phred13_vc root hairs of ... 40 0.26 2
(FF390462) MOOBR63TF MOO Vigna unguiculata cDNA 5', mRNA seq... 40 0.26 2
(CV718856) UCRCS08_0011B17_r Parent Washington Navel Orange ... 36 0.26 2
(CA800884) sat26b02.y1 Gm-c1056 Glycine soja cDNA clone SOYB... 40 0.26 2
(FG825814) UCRVU04_CCNI8974_b1 Cowpea 524B Mixed Tissue and ... 40 0.26 2
(CA910643) PCSC11992 Scarlet Runner Bean Suspensor Region Tr... 40 0.27 2
(CV718855) UCRCS08_0011B17_f Parent Washington Navel Orange ... 36 0.27 2
(FG871445) UCRVU07_CCNP7345_g1 Cowpea UCR 779 Mixed Tissue a... 40 0.27 2
(FG871444) UCRVU07_CCNP7345_b1 Cowpea UCR 779 Mixed Tissue a... 40 0.27 2
(FG855510) UCRVU05_CCNN20148_g1 Cowpea IT84S-2049 Mixed Tiss... 40 0.27 2
(FG855509) UCRVU05_CCNN20148_b1 Cowpea IT84S-2049 Mixed Tiss... 40 0.27 2
(FG825815) UCRVU04_CCNI8974_g1 Cowpea 524B Mixed Tissue and ... 40 0.27 2
(FC459319) UCRVU08_CCNS491_b1 Cowpea IT97K-461-4 Mixed Tissu... 40 0.27 2
(FF555978) MOPFY61TF MOP Vigna unguiculata cDNA 5', mRNA seq... 40 0.27 2
(BI468772) sai03c10.y1 Gm-c1050 Glycine max cDNA clone GENOM... 40 0.27 2
(DC887435) Citrus sinensis mRNA, clone: EIC0371, 5'-end sequ... 36 0.27 2
(AW101496) sd79a07.y1 Gm-c1009 Glycine max cDNA clone GENOME... 40 0.27 2
(AJ768207) Populus euphratica EST, clone P0000100015C06F1. 36 0.27 2
(FG941093) UCRVU09_CCNT17246_b1 Cowpea UCR 707 Mixed Tissue ... 40 0.27 2
(FG941094) UCRVU09_CCNT17246_g1 Cowpea UCR 707 Mixed Tissue ... 40 0.28 2
(FF545603) MOPCB06TF MOP Vigna unguiculata cDNA 5', mRNA seq... 40 0.28 2
(FG869374) UCRVU07_CCNP6043_b5 Cowpea UCR 779 Mixed Tissue a... 40 0.28 2
(FF387346) MOOCH33TF MOO Vigna unguiculata cDNA 5', mRNA seq... 40 0.28 2
(DY954047) CHPZ1536.b1_P24.ab1 CHP(XYZ) plains sunflower Hel... 38 0.28 2
(FG818656) UCRVU04_CCNI4851_g1 Cowpea 524B Mixed Tissue and ... 40 0.28 2
(FG818655) UCRVU04_CCNI4851_b1 Cowpea 524B Mixed Tissue and ... 40 0.28 2
(CK934632) CGF1004228_F10 Developing fruit peel at 38 DAFB C... 36 0.28 2
(FG827345) UCRVU04_CCNI9779_b1 Cowpea 524B Mixed Tissue and ... 40 0.28 2
(CA910644) PCSC19295 Scarlet Runner Bean Suspensor Region Tr... 40 0.29 2
(CA899007) PCEP00591 Scarlet Runner Bean Embryo-Proper Regio... 40 0.29 2
(FF553844) MOPFB19TF MOP Vigna unguiculata cDNA 5', mRNA seq... 40 0.29 2
(CF922409) gmrhRww24-10-T7_H04_1_018 Soybean root hair subtr... 40 0.29 2
(EI450367) PV_GBa0049K07.r PV_GBa Phaseolus vulgaris genomic... 48 0.29 1
(EI448257) PV_GBa0046M10.f PV_GBa Phaseolus vulgaris genomic... 48 0.29 1
(EI430980) PV_GBa0022O18.r PV_GBa Phaseolus vulgaris genomic... 48 0.29 1
(AV673200) Ciona intestinalis cDNA clone:citb7d18 : 5' end, ... 48 0.29 1
(AV671495) Ciona intestinalis cDNA clone:citb4i21 : 5' end, ... 48 0.29 1
(DY475473) U456 Chickpea (ICC3996) post-inoculation EST libr... 48 0.29 1
(DB828899) Nilaparvata lugens mRNA, EST clone:NLNB3517, 5' e... 48 0.29 1
(AM873376) Venerupis (Ruditapes) philippinarum EST, 5' end s... 48 0.29 1
(CO821548) LM_GB5_001874 Locusta migratoria gregarious phase... 48 0.29 1
(BW291346) Ciona intestinalis cDNA, clone:cigd044c15, 5' end... 48 0.29 1
(BW288000) Ciona intestinalis cDNA, clone:cigd035a09, 5' end... 48 0.29 1
(BW283915) Ciona intestinalis cDNA, clone:cigd023g08, 5' end... 48 0.29 1
(BW281328) Ciona intestinalis cDNA, clone:cigd016k23, 5' end... 48 0.29 1
(BP002505) Ciona intestinalis cDNA, clone:ciad26j04, 5' end,... 48 0.29 1
(GD642560) 454PCS0270254 Scarlet Runner Bean globular-stage ... 48 0.29 1
(GD573363) 454PCS0201054 Scarlet Runner Bean globular-stage ... 48 0.29 1
(GD444973) 454PCS0072665 Scarlet Runner Bean globular-stage ... 48 0.29 1
(GD412816) 454PCS0040507 Scarlet Runner Bean globular-stage ... 48 0.29 1
(FL644801) TS43-C8 Reticulitermes flavipes symbiont library ... 48 0.29 1
(AV880904) Ciona intestinalis cDNA, clone:rcicl59k01, 3' end... 48 0.29 1
(FG094495) s13dLA86C11RT046_531761 Lupinus albus L. (white l... 40 0.30 2
(BW161906) Ciona intestinalis cDNA, clone:rcigd044c15, 3' en... 42 0.30 2
(DR909452) USDA-FP_17580 Citrus sinensis phloem Citrus sinen... 36 0.30 2
(EY846740) CA26-C1-002-053-E07-CT.F Sour orange leaf, field ... 36 0.30 2
(CA910642) PCS02746 Scarlet Runner Bean Suspensor Region Tri... 40 0.30 2
(BG838184) Gc01_06e02_R Gc01_AAFC_ECORC_cold_stressed_Glycin... 40 0.30 2
(CX074290) UCRCS08_38C09_g Parent Washington Navel Orange Ca... 36 0.30 2
(BP958803) Euphorbia tirucalli mRNA, clone: ETC110C07, 5' end. 38 0.30 2
(CX074289) UCRCS08_38C09_b Parent Washington Navel Orange Ca... 36 0.30 2
(CX072049) UCRCS08_25G03_g Parent Washington Navel Orange Ca... 36 0.30 2
(CX072048) UCRCS08_25G03_b Parent Washington Navel Orange Ca... 36 0.31 2
(GH271645) PvM17_D02 Pistacia male and female panicles Pista... 36 0.32 2
(CA851031) D09D05_G05_07.ab1 cDNA Peking library 2, 4 day SC... 40 0.32 2
(BI971551) GM830013B21D12 Gm-r1083 Glycine max cDNA clone Gm... 40 0.32 2
(CK939616) CGF1004748_A10 Developing fruit flavedo at 165 DA... 36 0.32 2
(EY710922) CS00-C3-702-001-F12-CT.F Sweet orange fruit, deve... 36 0.32 2
(FF556404) MOPE775TF MOP Vigna unguiculata cDNA 5', mRNA seq... 40 0.33 2
(CB304511) FLAVEDO0001_IIaR_H04 Flavedo Mature Citrus sinens... 36 0.33 2
(FF537658) MOPAY05TF MOP Vigna unguiculata cDNA 5', mRNA seq... 40 0.34 2
(FF401132) MOOEC60TF MOO Vigna unguiculata cDNA 5', mRNA seq... 40 0.36 2
(FF549516) MOPE775TR MOP Vigna unguiculata cDNA 3', mRNA seq... 40 0.36 2
(EH257752) JGI_ACBU1627.fwd ACBU Phakopsora pachyrhizi infec... 40 0.36 2
(FK015451) GLNC065TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 40 0.36 2
(FG991277) GLLDR09TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 40 0.37 2
(DC891631) Citrus limon mRNA, clone: LLL0317, 5'-end sequenc... 36 0.37 2
(FG866656) UCRVU07_CCNP4080_g1 Cowpea UCR 779 Mixed Tissue a... 40 0.38 2
(FG866655) UCRVU07_CCNP4080_b1 Cowpea UCR 779 Mixed Tissue a... 40 0.38 2
(DC892003) Citrus limon mRNA, clone: LLL0818, 5'-end sequenc... 36 0.38 2
(BI426873) sag08e09.y1 Gm-c1080 Glycine max cDNA clone GENOM... 40 0.39 2
(AW756607) sl24h04.y1 Gm-c1036 Glycine max cDNA clone GENOME... 40 0.40 2
(GH270494) PvF01_A08 Pistacia male and female panicles Pista... 36 0.40 2
(EY800648) CR05-C3-701-099-F02-CT.F Mandarin fruit, developm... 36 0.46 2
(EY686484) CS00-C2-003-045-H09-CT.F Sweet orange bark, green... 36 0.48 2
(GD874123) 454GmaGlobSeed616772 Soybean Seeds Containing Glo... 40 0.54 2
(EX285884) 1573305_5_B15_064 PY06 Carica papaya cDNA, mRNA s... 42 0.57 2
(GD895349) 454GmaGlobSeed637998 Soybean Seeds Containing Glo... 40 0.58 2
(FK653917) 454GmaGlobSeed388549 Soybean Seeds Containing Glo... 40 0.58 2
(FK632899) 454GmaGlobSeed367531 Soybean Seeds Containing Glo... 40 0.58 2
(GE055163) 454GmaGlobSeed797811 Soybean Seeds Containing Glo... 40 0.59 2
(BF068655) st12h04.y1 Gm-c1065 Glycine max cDNA clone GENOME... 40 0.61 2
(CU222931) Populus EST from leave. 40 0.77 2
(CU425183) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 34 0.83 2
(EC606287) Y17B10 YLX600 Hevea brasiliensis cDNA clone Y17B1... 40 0.88 2
(DB985498) Glycine max cDNA, clone: GMFL02-36-O13, 3'end. 40 0.91 2
(FK014759) GLNBS65TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 40 0.91 2
(DV455829) CV02019B2E10.f1 CV02-normalized library Manihot e... 38 0.92 2
(AJ558442) Antirrhinum majus EST, clone 018_1_07_i14. 34 0.96 2
(CK116575) B014P18 Hybrid aspen plasmid library Populus trem... 40 0.98 2
(AJ780420) Populus euphratica EST, clone P0000900007G08F1. 40 0.98 2
(AJ789947) Antirrhinum majus EST, clone 018_2_04_e10. 34 0.99 2
(CB376398) Hb13F07 Latex Lambda TriplEX cDNA Library Hevea b... 40 1.0 2
(CA925122) MTU7TL.P13.G11 Aspen leaf cDNA Library Populus tr... 40 1.0 2
(CA925954) MTU7TL.P8.B06 Aspen leaf cDNA Library Populus tre... 40 1.0 2
(CK606101) gmrhRww6-08_B12_T7 Soybean root hair subtracted c... 40 1.0 2
(FG827346) UCRVU04_CCNI9779_g1 Cowpea 524B Mixed Tissue and ... 40 1.0 2
(BW660489) Glycine max cDNA clone: GMFL01-17-I04, 5'end. 40 1.1 2
(BW653419) Glycine max cDNA clone: GMFL01-05-D18, 5'end. 40 1.1 2
(BE659790) GM700010B20E12 Gm-r1070 Glycine max cDNA clone Gm... 40 1.1 2
(BE021385) sm57h09.y1 Gm-c1028 Glycine max cDNA clone GENOME... 40 1.1 2
(AJ790762) Antirrhinum majus EST, clone 018_2_06_j18. 34 1.1 2
(BI315553) saf74a04.y1 Gm-c1078 Glycine max cDNA clone GENOM... 40 1.1 2
(CD390448) Gm_ck0878 Soybean induced by Salicylic Acid Glyci... 40 1.1 2
(DT524601) WS02043.C21_B15 PTxN-IB-N-A-11 Populus trichocarp... 40 1.1 2
(BG509361) sad12g07.y1 Gm-c1074 Glycine max cDNA clone GENOM... 40 1.1 2
(BM093464) saj09c06.y1 Gm-c1065 Glycine max cDNA clone GENOM... 40 1.1 2
(BW682702) Glycine max cDNA clone: GMFL01-49-M11, 5'end. 40 1.1 2
(BU877122) V030bB10 Populus flower cDNA library Populus tric... 40 1.1 2
(AW119833) sd53d04.y1 Gm-c1016 Glycine max cDNA clone GENOME... 40 1.1 2
(CX657813) PO01005F03 Poplar SC cDNA library Populus alba x ... 40 1.1 2
(EV263112) GLLA271TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 40 1.2 2
(CU572404) S.lycopersicum DNA sequence from clone LE_HBa-121... 46 1.2 1
(AY527414) Spodoptera frugiperda chitinase mRNA, complete cds. 46 1.2 1
(AC084408) Homo sapiens 3q BAC RP11-47C16 (Roswell Park Canc... 46 1.2 1
(CU915749) S.lycopersicum DNA sequence *** SEQUENCING IN PRO... 46 1.2 1
(AK247755) Solanum lycopersicum cDNA, clone: LEFL2005N13, HT... 46 1.2 1
(AK247100) Solanum lycopersicum cDNA, clone: LEFL1034AH07, H... 46 1.2 1
(DX276036) OR_ABa0173M08.r OR_ABa Oryza ridleyi genomic clon... 46 1.2 1
(DX240895) OR_ABa0124N05.f OR_ABa Oryza ridleyi genomic clon... 46 1.2 1
(DU856091) 58546 Tomato HindIII BAC Library Solanum lycopers... 46 1.2 1
(BZ893949) HL8_0184 Hl pUC18 Library Halorubrum lacusprofund... 46 1.2 1
(EE593362) RM_G_00025 rare minnow gill cDNA Library Gobiocyp... 46 1.2 1
(DN983137) SV66F08_SOL12A_063 SV6 Solanum chacoense cDNA, mR... 46 1.2 1
(DN982333) SV6_46F12_SV6_46_095 SV6 Solanum chacoense cDNA, ... 46 1.2 1
(DN979657) SV58G04_SOL31A_024 SV5 Solanum chacoense cDNA, mR... 46 1.2 1
(DN849969) 14905.2 Stolon Solanum tuberosum cDNA clone 14905... 46 1.2 1
(DB723760) Solanum lycopersicum cDNA, clone: LEFL2044J18, 5'... 46 1.2 1
(DB720437) Solanum lycopersicum cDNA, clone: LEFL2034N19, 5'... 46 1.2 1
(DB714881) Solanum lycopersicum cDNA, clone: LEFL2018I07, 5'... 46 1.2 1
(DB709199) Solanum lycopersicum cDNA, clone: LEFL2001CF02, 5... 46 1.2 1
(DB688817) Solanum lycopersicum cDNA, clone: LEFL1034AH07, 5... 46 1.2 1
(CV652163) 78539.1 Low Molecular Weight Solanum tuberosum cD... 46 1.2 1
(CV504689) 71250.1 Mixed Floral Solanum tuberosum cDNA clone... 46 1.2 1
(CV502730) 69141.1 Mixed Floral Solanum tuberosum cDNA clone... 46 1.2 1
(CV498973) 63285.1 Mixed Leaf Solanum tuberosum cDNA clone 6... 46 1.2 1
(CV495309) 40601.1 Cold Sweetening B Solanum tuberosum cDNA ... 46 1.2 1
(CK853945) 14905 Stolon Solanum tuberosum cDNA, mRNA sequence. 46 1.2 1
(AI779004) EST259883 tomato susceptible, Cornell Solanum lyc... 46 1.2 1
(BW691809) Solanum lycopersicum cDNA, clone: FC23CB09, 5' en... 46 1.2 1
(BW688474) Solanum lycopersicum cDNA, clone: FC12BA04, 5' en... 46 1.2 1
(BQ853169) QGB1a04.yg.ab1 QG_ABCDI lettuce salinas Lactuca s... 46 1.2 1
(BQ846552) QGA19M22.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 46 1.2 1
(BQ845121) QGA15M20.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 46 1.2 1
(BQ844625) QGA14F22.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 46 1.2 1
(BQ844103) QGA12M21.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 46 1.2 1
(BQ047643) EST596761 P. infestans-challenged potato leaf, in... 46 1.2 1
(BP892505) Solanum lycopersicum cDNA, clone: FB10BE04, 5' en... 46 1.2 1
(BI435074) EST537835 P. infestans-challenged potato leaf, co... 46 1.2 1
(BI210851) EST528891 cTOS Solanum lycopersicum cDNA clone cT... 46 1.2 1
(BI204558) EST522598 cTOS Solanum lycopersicum cDNA clone cT... 46 1.2 1
(BG131241) EST464133 tomato crown gall Solanum lycopersicum ... 46 1.2 1
(GH166645) Nas54_B05_2005-01-08_045.ab1 Nasturtium 22 days p... 46 1.2 1
(FL681498) CIRQN002F04 CiRQ Cichorium intybus cDNA 3', mRNA ... 46 1.2 1
(AW650741) EST329195 tomato germinating seedlings, TAMU Sola... 46 1.2 1
(AW648580) EST327130 tomato germinating seedlings, TAMU Sola... 46 1.2 1
(AW625702) EST319609 tomato radicle, 5 d post-imbibition, Co... 46 1.2 1
(AW443531) EST308461 tomato mixed elicitor, BTI Solanum lyco... 46 1.2 1
(AW443087) EST308017 tomato mixed elicitor, BTI Solanum lyco... 46 1.2 1

>(C93113) Dictyostelium discoideum slug cDNA, clone SSM569.
Length = 403

Score = 329 bits (166), Expect = 5e-86
Identities = 166/166 (100%)
Strand = Plus / Plus


Query: 183 taatgtagaagttattgaagatgatgaatttgaagagtttgaagataatatggccgaagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taatgtagaagttattgaagatgatgaatttgaagagtttgaagataatatggccgaagg 242


Query: 243 cgaagataactcaaaagaacaatgggaagatgattgggatactgataaaattgatgacga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cgaagataactcaaaagaacaatgggaagatgattgggatactgataaaattgatgacga 302


Query: 303 tttttcaaaacaattaagagctgaaattgaatcccactcaaccatg 348
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttttcaaaacaattaagagctgaaattgaatcccactcaaccatg 348

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 224,198,928
Number of extensions: 14296483
Number of successful extensions: 1148686
Number of sequences better than 10.0: 624
Length of query: 460
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 437
Effective length of database: 99,442,330,388
Effective search space: 43456298379556
Effective search space used: 43456298379556
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Contig-U04312-1Q.Seq.d
(460 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 228,489,278
Number of extensions: 1542917
Number of successful extensions: 2961
Number of sequences better than 10.0: 0
Number of HSP's gapped: 2961
Number of HSP's successfully gapped: 0
Length of query: 153
Length of database: 1,061,185,681
Length adjustment: 115
Effective length of query: 38
Effective length of database: 685,314,161
Effective search space: 26041938118
Effective search space used: 26041938118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.45 gvh: 0.01 alm: 0.72 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U04312-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0