Contig-U04308-1
Contig ID Contig-U04308-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04308-1 (Contig-U04308-1Q) /CSM_Contig/Contig-U04308-1Q.Seq.d
AAAGCTCATTTACATTCATTTAAACATCATGCATCATCAGTTAATGGAAT
TTTACTTGGTAAAGCCGATAAAAACTCAATTTTAATTACAGATATAATAC
CACTTTTTCATACACAAACTTTATTACCGATGTTTGAAGTTGCAATGATT
CAGATTGAAAAATATTGTAGAGATAATAATATAGATATGGTTGGATATTA
TCATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAACCAATAGCTA
AAAAAATTGCTGATAGATTAAACAATGAATTAAATAATATGTGCTTTTTA
ATGATTTCAAAGATTGAAGTAAATCGTCCAAGTGGTTTAGTTTCCATTGA
TAAAGTTGGTTCTGATTGGTTAAAAAATAGAAAAACATTAATTACAATCG
ATACAACCTCAAATAGTGAAGATATTAATGAAATCTTAAAAAGAAATTTA
CAAAATATAAAAGAATCTCAAATTTATGATTTTGAGGAATATCTTTCAAA
TCCAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAATAAAGCCATA
TTTATATTTTTAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

Gap no gap
Contig length 614
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1347295
End point 1346759
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U04308
List of clone(s)

est1=SSA112E,1,585
est2=VSE406Z,49,615
Translated Amino Acid sequence
KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN
IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG
SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL*
*shiyifkl*kkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN
IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG
SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL*
*shiyifkl*kkkkkkkkkkkkkk


Frame B:
kliyihlnimhhqlmefylvkpiktqf*lqi*yhffihklyyrclklq*frlkniveiii
*iwldiiiqinv*qtn*nlnq*lkkllid*tmn*iicaf**fqrlk*ivqvv*fpliklv
lig*kiekh*lqsiqpqivkilmks*keiyki*knlkfmilrnifqiqlvig*inh*fyn
kaififlnykkkkkkkkkkkkkkk


Frame C:
ssftfi*tsciis*wnftw*sr*klnfnyrynttfsytnfitdv*scndsd*kil*r**y
rygwilsfksmyskrirt*tns*knc**ikq*ik*yvlfndfkd*sksskwfsfh**swf
*lvkk*kninynrynlk**ry**nlkkkftkykrisnl*f*gisfksns*lvk*iisfii
kpylyf*iikkkkkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04308-1 (Contig-U04308-1Q)
/CSM_Contig/Contig-U04308-1Q.Seq.d
(614 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04308-1 (Contig-U04308-1Q) /CSM_Contig/Conti... 1084 0.0
Contig-U09507-1 (Contig-U09507-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U13776-1 (Contig-U13776-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U02869-1 (Contig-U02869-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U14355-1 (Contig-U14355-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U13937-1 (Contig-U13937-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U11916-1 (Contig-U11916-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U11164-1 (Contig-U11164-1Q) /CSM_Contig/Conti... 34 0.17

>Contig-U04308-1 (Contig-U04308-1Q) /CSM_Contig/Contig-U04308-1Q.Seq.d
Length = 614

Score = 1084 bits (547), Expect = 0.0
Identities = 561/568 (98%)
Strand = Plus / Plus


Query: 1 aaagctcatttacattcatttaaacatcatgcatcatcagttaatggaattttacttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagctcatttacattcatttaaacatcatgcatcatcagttaatggaattttacttggt 60


Query: 61 aaagccgataaaaactcaattttaattacagatataataccactttttcatacacaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagccgataaaaactcaattttaattacagatataataccactttttcatacacaaact 120


Query: 121 ttattaccgatgtttgaagttgcaatgattcagattgaaaaatattgtagagataataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttattaccgatgtttgaagttgcaatgattcagattgaaaaatattgtagagataataat 180


Query: 181 atagatatggttggatattatcattcaaatcaatgtatagcaaacgaattagaacctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atagatatggttggatattatcattcaaatcaatgtatagcaaacgaattagaacctgaa 240


Query: 241 ccaatagctnnnnnnnttgctgatagattaaacaatgaattaaataatatgtgcttttta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaatagctaaaaaaattgctgatagattaaacaatgaattaaataatatgtgcttttta 300


Query: 301 atgatttcaaagattgaagtaaatcgtccaagtggtttagtttccattgataaagttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgatttcaaagattgaagtaaatcgtccaagtggtttagtttccattgataaagttggt 360


Query: 361 tctgattggttaaaaaatagaaaaacattaattacaatcgatacaacctcaaatagtgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctgattggttaaaaaatagaaaaacattaattacaatcgatacaacctcaaatagtgaa 420


Query: 421 gatattaatgaaatcttaaaaagaaatttacaaaatataaaagaatctcaaatttatgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatattaatgaaatcttaaaaagaaatttacaaaatataaaagaatctcaaatttatgat 480


Query: 481 tttgaggaatatctttcaaatccaactcgtgattggttaaataaatcattagttttataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttgaggaatatctttcaaatccaactcgtgattggttaaataaatcattagttttataa 540


Query: 541 taaagccatatttatatttttaaattat 568
||||||||||||||||||||||||||||
Sbjct: 541 taaagccatatttatatttttaaattat 568


>Contig-U09507-1 (Contig-U09507-1Q) /CSM_Contig/Contig-U09507-1Q.Seq.d
Length = 951

Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 438 aaaaagaaatttacaaaatataaaa 462
||||||||||||| |||||||||||
Sbjct: 84 aaaaagaaatttaaaaaatataaaa 108


>Contig-U13776-1 (Contig-U13776-1Q) /CSM_Contig/Contig-U13776-1Q.Seq.d
Length = 792

Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 300 aatgatttcaaagattgaa 318
|||||||||||||||||||
Sbjct: 403 aatgatttcaaagattgaa 385


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,475
Number of Sequences: 6905
Number of extensions: 12475
Number of successful extensions: 1408
Number of sequences better than 10.0: 159
length of query: 614
length of database: 5,674,871
effective HSP length: 16
effective length of query: 598
effective length of database: 5,564,391
effective search space: 3327505818
effective search space used: 3327505818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.15
Homology vs DNA
Query= Contig-U04308-1 (Contig-U04308-1Q) /CSM_Contig/Contig-U04308-1Q.Seq.d
(614 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU075922) Dictyostelium discoideum slug cDNA, clone SSA112. 617 0.0 2
(C24617) Dictyostelium discoideum slug cDNA, clone SL-X012. 617 0.0 2
(AU263079) Dictyostelium discoideum vegetative cDNA clone:VS... 613 0.0 2
(CU914347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6e-04 5
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.006 12
(AC157779) Medicago truncatula chromosome 6 clone mth2-156d2... 36 0.006 6
(AM445271) Vitis vinifera contig VV78X192640.3, whole genome... 44 0.017 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 36 0.025 15
(AC165018) Bos taurus clone CH240-160I12, WORKING DRAFT SEQU... 42 0.077 4
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 34 0.089 17
(AM180355) Clostridium difficile 630 complete genome. 34 0.13 16
(FI140530) MUGQ_CH252P370B16T7_CH0243_064 CHORI-252 Vervet M... 46 0.22 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.23 10
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.23 17
(CW952380) TcB38.1_F05_SP6 Tribolium BAC library Tribolium c... 32 0.31 3
(AC153767) Loxodonta africana clone VMRC15-260O14, WORKING D... 38 0.37 4
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 34 0.38 12
(CR848667) Zebrafish DNA sequence from clone CH211-257P13 in... 48 0.40 1
(BX324145) Zebrafish DNA sequence from clone CH211-207C13 in... 48 0.40 1
(AC127560) Mus musculus BAC clone RP24-267I18 from chromosom... 48 0.40 1
(AC123661) Mus musculus chromosome 5, clone RP23-211E12, com... 48 0.40 1
(AC116783) Mus musculus chromosome 5, clone RP24-145D9, comp... 48 0.40 1
(AC225831) Macaca mulatta Y BAC CH250-204D1 (Children's Hosp... 48 0.40 1
(AC208303) MACACA MULATTA BAC clone CH250-499N5 from chromos... 48 0.40 1
(AC007972) Homo sapiens clone RP11-537C24, complete sequence. 48 0.40 1
(AC118081) Rattus norvegicus clone CH230-365E12, *** SEQUENC... 48 0.40 1
(AC111512) Rattus norvegicus clone CH230-134N11, *** SEQUENC... 48 0.40 1
(FP102086) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.40 1
(AC091631) Homo sapiens chromosome UL clone RP11-522L17, ***... 48 0.40 1
(AC172084) Bos taurus clone CH240-305P14, WORKING DRAFT SEQU... 48 0.40 1
(AC167872) Bos taurus clone CH240-183P9, WORKING DRAFT SEQUE... 48 0.40 1
(AM453338) Vitis vinifera contig VV78X005220.13, whole genom... 44 0.42 3
(EC821386) SME00003945 esmbsro2 Sawyeria marylandensis cDNA,... 32 0.43 3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 0.46 9
(CU861621) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.50 6
(AC002347) Homo sapiens chromosome 17, clone CTC-297N7, comp... 40 0.64 5
(AL844509) Plasmodium falciparum chromosome 13. 44 0.65 14
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 34 0.66 6
(CU272325) Equus caballus GSS, BAC clone CH241-425A15, T7 en... 38 0.73 2
(CT806428) Pan troglodytes chromosome X clone CH251-228P22 m... 36 0.80 6
(AC103187) Rattus norvegicus clone CH230-108E1, *** SEQUENCI... 32 0.83 2
(CJ450760) Macaca fascicularis mRNA, clone: QflA-16338, 5' e... 40 0.84 2
(AM467863) Vitis vinifera contig VV78X033737.3, whole genome... 44 0.88 3
(AM426825) Vitis vinifera contig VV78X168943.9, whole genome... 36 0.93 3
(CS468840) Sequence 31 from Patent EP1748080. 40 0.95 2
(CS468839) Sequence 30 from Patent EP1748080. 40 0.95 2
(CS419317) Sequence 31 from Patent WO2006094836. 40 0.95 2
(CS419316) Sequence 30 from Patent WO2006094836. 40 0.95 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.97 12
(CP000312) Clostridium perfringens SM101, complete genome. 36 0.97 15
(AC232065) Solanum tuberosum chromosome 1 clone RH085N12, **... 40 0.99 3
(AC216675) Populus trichocarpa clone POP028-O03, complete se... 34 1.0 5
(AC034303) Homo sapiens chromosome 17, clone RP11-648P8, com... 40 1.1 5
(AC130537) Mus musculus BAC clone RP23-412D3 from 8, complet... 40 1.1 6
(AC150704) Medicago truncatula clone mth2-131h23, complete s... 32 1.1 7
(AP009597) Solanum lycopersicum DNA, chromosome 8, clone: C0... 40 1.1 3
(AC176872) Strongylocentrotus purpuratus clone R3-31F17, WOR... 40 1.1 5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 1.2 10
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 1.2 16
(AM461199) Vitis vinifera contig VV78X277643.8, whole genome... 42 1.2 2
(AL355072) Human chromosome 14 DNA sequence BAC R-135B15 of ... 36 1.3 5
(AC214861) Populus trichocarpa clone POP007-N13, complete se... 40 1.5 2
(AC186360) Gallus gallus BAC clone CH261-55G9 from chromosom... 46 1.6 1
(BX255277) Mouse DNA sequence from clone RP23-478B14 on chro... 46 1.6 1
(AC215276) MACACA MULATTA BAC clone CH250-135H3 from chromos... 46 1.6 1
(X76990) S.arvensis tandem repeat sequence. 46 1.6 1
(AC163893) Glomus intraradices clone JGIATSX-9C7, complete s... 46 1.6 1
(AL513124) Human DNA sequence from clone RP11-401G5 on chrom... 46 1.6 1
(AC161559) Bos taurus clone CH240-104A13, WORKING DRAFT SEQU... 46 1.6 1
(AC125886) Rattus norvegicus clone CH230-273H1, WORKING DRAF... 46 1.6 1
(AC121745) Rattus norvegicus clone CH230-103H21, WORKING DRA... 46 1.6 1
(AC121434) Rattus norvegicus clone CH230-218K11, WORKING DRA... 46 1.6 1
(AC098561) Rattus norvegicus clone CH230-98A11, WORKING DRAF... 46 1.6 1
(CU041243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(AC222855) Bos taurus clone CH240-436J10, WORKING DRAFT SEQU... 46 1.6 1
(AC222691) Bos taurus clone CH240-441G22, WORKING DRAFT SEQU... 46 1.6 1
(AC169581) Bos taurus clone CH240-198M8, WORKING DRAFT SEQUE... 46 1.6 1
(BH532557) BOGWN61TF BOGW Brassica oleracea genomic clone BO... 46 1.6 1
(CE719368) tigr-gss-dog-17000315089301 Dog Library Canis lup... 46 1.6 1
(FK929021) EST_lsal_evj_941429 lsalevj mixed_tissue_mixed_st... 46 1.6 1
(FK929020) EST_lsal_evj_945269 lsalevj mixed_tissue_mixed_st... 46 1.6 1
(FK901760) EST_lsal_evj_853729 lsalevj mixed_tissue_mixed_st... 46 1.6 1
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ... 46 1.6 1
(AP003081) Homo sapiens genomic DNA, chromosome 11q clone:RP... 42 1.6 2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 1.6 8
(AC026759) Oryza sativa Japonica Group chromosome 10 clone O... 34 1.7 5
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 1.8 8
(AC185672) Bos taurus clone RP42-179O2, WORKING DRAFT SEQUEN... 38 1.8 5
(CR359650) Arabidopsis thaliana T-DNA flanking sequence GK-7... 42 1.9 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 1.9 16
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 34 2.0 8
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 2.0 10
(AC213156) Populus trichocarpa clone POP076-I18, complete se... 38 2.1 3
(CU302313) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.1 3
(AC186134) Medicago truncatula chromosome 2 BAC clone mte1-1... 36 2.2 3
(BX323052) Zebrafish DNA sequence from clone CH211-234A12 in... 36 2.2 6
(AE015927) Clostridium tetani E88, complete genome. 40 2.3 13
(AC114010) Mus musculus BAC clone RP24-378K23 from chromosom... 42 2.3 6
(AB066098) Campylobacter lari genes for 16S rRNA, ITS region... 40 2.3 2
(AF404306) Rhizophydium sp. 136 mitochondrion, complete genome. 38 2.4 5
(AC036130) Homo sapiens chromosome 4 clone RP11-526M1 map 4,... 42 2.4 4
(AC189269) Brassica rapa subsp. pekinensis clone KBrB023B16,... 44 2.5 4
(CU855607) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.5 6
(AC194440) Zea mays chromosome 5 clone CH201-152A4; ZMMBBc01... 44 2.5 2
(AL135920) Human DNA sequence from clone RP11-514L15 on chro... 36 2.5 4
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 38 2.7 9
(AC233653) Medicago truncatula chromosome 6, pooled multiple... 40 2.7 4
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 2.8 8
(AC130755) Rattus norvegicus clone CH230-10D6, *** SEQUENCIN... 42 2.8 2
(EI481587) PV_GBa0094E04.r PV_GBa Phaseolus vulgaris genomic... 42 2.9 2
(EJ257345) 1095349017008 Global-Ocean-Sampling_GS-27-01-01-1... 36 2.9 2
(EK170057) 1095458070619 Global-Ocean-Sampling_GS-31-01-01-1... 30 3.0 3
(EJ594669) 1092961072562 Global-Ocean-Sampling_GS-29-01-01-1... 36 3.0 2
(CU914552) Brassica rapa subsp. pekinensis clone KBrB026E16,... 32 3.1 2
(AC189570) Brassica rapa subsp. pekinensis clone KBrH009P18,... 32 3.1 2
(AC189390) Brassica rapa subsp. pekinensis clone KBrB053L06,... 32 3.1 2
(CU695296) Brassica rapa subsp. pekinensis clone KBrH035H17,... 32 3.1 2
(CT025838) Medicago truncatula chromosome 5 clone mth2-124f1... 34 3.1 2
(AX573242) Sequence 88 from Patent WO02074992. 38 3.2 8
(CT963133) M.truncatula DNA sequence from clone MTH2-173G21 ... 34 3.3 5
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g... 34 3.3 17
(CP000013) Borrelia garinii PBi, complete genome. 34 3.7 13
(AM434783) Vitis vinifera contig VV78X070524.16, whole genom... 36 3.7 2
(AM485635) Vitis vinifera contig VV78X074804.9, whole genome... 40 3.8 3
(EJ657308) 1092955010720 Global-Ocean-Sampling_GS-30-02-01-1... 32 3.8 3
(AC134274) Rattus norvegicus clone CH230-60I16, *** SEQUENCI... 42 3.9 5
(AC163679) Mus musculus BAC clone RP24-104E24 from chromosom... 38 3.9 7
(AC025982) Homo sapiens chromosome 3 clone RP11-564C24 map 3... 36 4.0 5
(CT514053) A BAC library has been constructed from cultivar ... 34 4.0 2
(BH705868) BOMJM41TR BO_2_3_KB Brassica oleracea genomic clo... 32 4.1 2
(DQ855265) Glycine max clone BAC GM-WBb0040I14, *** SEQUENCI... 38 4.1 4
(BH730511) BOMFA01TF BO_2_3_KB Brassica oleracea genomic clo... 32 4.1 2
(BH493329) BOHKQ47TR BOHK Brassica oleracea genomic clone BO... 32 4.1 2
(AC179176) Strongylocentrotus purpuratus clone R3-1107G21, W... 42 4.1 5
(BH727850) BOMME83TF BO_2_3_KB Brassica oleracea genomic clo... 32 4.2 2
(AC110096) Rattus norvegicus clone CH230-225C11, *** SEQUENC... 42 4.2 5
(AJ926066) Theileria annulata EST, clone tam011a02_q1k. 40 4.4 2
(AP010176) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 4.6 7
(AL355887) Human chromosome 14 DNA sequence BAC R-179O11 of ... 36 4.7 6
(AC224225) Bos taurus clone CH240-445N6, WORKING DRAFT SEQUE... 34 4.7 6
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 32 4.7 8
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 4.8 7
(AC221399) Bos taurus clone CH240-406C20, WORKING DRAFT SEQU... 42 5.0 4
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 5.1 8
(X95276) Plasmodium falciparum complete gene map of plastid-... 34 5.1 4
(BX296535) Zebrafish DNA sequence from clone CH211-234I2 in ... 34 5.2 6
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 5.2 7
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome. 34 5.3 15
(AC224196) Bos taurus clone CH240-446N24, WORKING DRAFT SEQU... 38 5.4 5
(AC222083) Bos taurus clone CH240-372L20, WORKING DRAFT SEQU... 44 5.5 4
(CR751608) Zebrafish DNA sequence from clone DKEY-41E15 in l... 36 5.5 7
(AC152133) Dasypus novemcinctus clone VMRC5-216J23, WORKING ... 38 5.6 4
(AP001681) Homo sapiens genomic DNA, chromosome 21q, section... 42 5.6 7
(AC202830) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 38 5.6 4
(CR749163) Zebrafish DNA sequence from clone CH211-216B21 in... 38 5.8 5
(AC160154) Bos taurus clone CH240-86M14, WORKING DRAFT SEQUE... 42 5.9 5
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 36 6.1 4
(AC157980) Medicago truncatula clone mth2-170b10, complete s... 36 6.2 6
(BX649476) Zebrafish DNA sequence from clone DKEY-13I19 in l... 44 6.2 1
(CP000925) Synthetic Mycoplasma genitalium JCVI-1.0, complet... 44 6.2 1
(BX649359) Mouse DNA sequence from clone RP24-103D10 on chro... 44 6.2 1
(AC183540) Pan troglodytes BAC clone CH251-324O24 from chrom... 44 6.2 1
(EF625821) Carica papaya clone MSY BAC PH94E22 complete sequ... 44 6.2 1
(AP004536) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 6.2 1
(AM489375) Vitis vinifera contig VV78X134902.7, whole genome... 44 6.2 1
(AM488907) Vitis vinifera contig VV78X147910.9, whole genome... 44 6.2 1
(AM488901) Vitis vinifera contig VV78X153149.10, whole genom... 44 6.2 1
(AM463758) Vitis vinifera, whole genome shotgun sequence, co... 44 6.2 1
(AM463266) Vitis vinifera contig VV78X120055.7, whole genome... 44 6.2 1
(AM462687) Vitis vinifera, whole genome shotgun sequence, co... 44 6.2 1
(AM455332) Vitis vinifera contig VV78X002003.2, whole genome... 44 6.2 1
(AM454598) Vitis vinifera contig VV78X099481.3, whole genome... 44 6.2 1
(AM454300) Vitis vinifera contig VV78X108646.5, whole genome... 44 6.2 1
(AM448079) Vitis vinifera contig VV78X192841.3, whole genome... 44 6.2 1
(AM447150) Vitis vinifera, whole genome shotgun sequence, co... 44 6.2 1
(AM442413) Vitis vinifera contig VV78X157014.16, whole genom... 44 6.2 1
(AM433990) Vitis vinifera contig VV78X076911.7, whole genome... 44 6.2 1
(AM426329) Vitis vinifera contig VV78X075083.79, whole genom... 44 6.2 1
(AM426058) Vitis vinifera contig VV78X124406.5, whole genome... 44 6.2 1
(AC232519) Brassica rapa subsp. pekinensis clone KBrB072K21,... 44 6.2 1
(AC215412) Solanum lycopersicum chromosome 2 clone C02HBa018... 44 6.2 1
(AC148404) Medicago truncatula clone mth2-28d4, complete seq... 44 6.2 1
(EF583821) Bacillus phage 0305phi8-36, complete genome. 44 6.2 1
(EA427602) Sequence 77 from patent US 7332281. 44 6.2 1
(DL007621) NOVEL THERAPEUTIC TARGETS IN CANCER. 44 6.2 1
(DD141718) NANOMACHINE COMPOSITIONS AND METHODS OF USE. 44 6.2 1
(BD439871) Nucleotide Sequence of the Mycoplasma Genitalium ... 44 6.2 1
(GN010572) Sequence 190 from Patent WO2007149269. 44 6.2 1
(AR300198) Sequence 1 from patent US 6537773. 44 6.2 1
(EF445017) Homo sapiens tyrosine-protein phosphatase non-rec... 44 6.2 1
(AP002449) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 44 6.2 1
(AC107614) Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cance... 44 6.2 1
(AC162017) Bos taurus clone CH240-101B5, WORKING DRAFT SEQUE... 44 6.2 1
(AC159736) Bos taurus clone CH240-16P1, WORKING DRAFT SEQUEN... 44 6.2 1
(AC156338) Bos taurus clone CH240-48C12, WORKING DRAFT SEQUE... 44 6.2 1
(AC114354) Rattus norvegicus clone CH230-258L8, *** SEQUENCI... 44 6.2 1
(AC113899) Rattus norvegicus clone CH230-329K9, *** SEQUENCI... 44 6.2 1
(AC096178) Rattus norvegicus clone CH230-11D6, WORKING DRAFT... 44 6.2 1
(CU914127) Medicago truncatula chromosome 5 clone mth2-44c3,... 44 6.2 1
(CU914126) Medicago truncatula chromosome 5 clone mth2-58g18... 44 6.2 1
(AC069433) Homo sapiens chromosome 3 clone RP11-345O2, WORKI... 44 6.2 1
(AC068415) Homo sapiens clone RP11-719A7, WORKING DRAFT SEQU... 44 6.2 1
(AC067860) Homo sapiens chromosome 18 clone RP11-345O3 map 1... 44 6.2 1
(CU466978) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.2 1
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 44 6.2 1
(AC232293) Zea mays chromosome 10 clone ZMMBBb-115B18; ZMMBB... 44 6.2 1
(AC224714) Bos taurus clone CH240-478H20, WORKING DRAFT SEQU... 44 6.2 1
(AC223653) Bos taurus clone CH240-462O4, WORKING DRAFT SEQUE... 44 6.2 1
(AC220889) Bos taurus clone CH240-341N6, WORKING DRAFT SEQUE... 44 6.2 1
(AC220164) Bos taurus clone CH240-364L14, WORKING DRAFT SEQU... 44 6.2 1
(AC215180) Zea mays chromosome 3 clone CH201-528B15; ZMMBBc0... 44 6.2 1
(AC212837) Zea mays chromosome 3 clone CH201-118P11; ZMMBBc0... 44 6.2 1
(AC212197) Zea mays chromosome 3 clone CH201-554A18; ZMMBBc0... 44 6.2 1
(AC210844) Zea mays chromosome 1 clone CH201-104O5; ZMMBBc01... 44 6.2 1
(AC204527) Zea mays chromosome 6 clone CH201-541P18; ZMMBBc0... 44 6.2 1
(AC202488) Medicago truncatula clone mth2-180n9, WORKING DRA... 44 6.2 1
(AC191054) Zea mays chromosome 10 clone CH201-11B18; ZMMBBc0... 44 6.2 1
(AC185072) Bos taurus clone CH240-88B19, WORKING DRAFT SEQUE... 44 6.2 1
(AC184703) Zea mays chromosome 5 clone CH201-6M3; ZMMBBc0006... 44 6.2 1
(AC170436) Bos taurus clone CH240-252C3, WORKING DRAFT SEQUE... 44 6.2 1
(AC165892) Bos taurus clone CH240-178B22, WORKING DRAFT SEQU... 44 6.2 1
(FI051628) CHO_OF6514xo05f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 6.2 1
(FH961355) CHO_OF6774xk23r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 6.2 1
(FH888511) yaBac01-1_C04 Guppy pIndigoBAC-5 genomic Poecilia... 44 6.2 1
(FH547262) CHO_OF4513xm17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.2 1
(ER968085) AF__Bc0017J05r AF__Bc Aquilegia formosa genomic, ... 44 6.2 1
(EK569017) 1095521064966 Global-Ocean-Sampling_GS-32-01-01-1... 44 6.2 1
(EK426506) 1095516034865 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.2 1
(EK347925) 1095467584519 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.2 1
(EK324776) 1095467003055 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.2 1
(EJ967424) 1093022052814 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ953330) 1093018959817 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(DU566353) OO__Ba0050F16.f OO__Ba Oryza officinalis genomic ... 44 6.2 1
(DU540554) OO__Ba0012O22.f OO__Ba Oryza officinalis genomic ... 44 6.2 1
(DU354358) 1098312023207 CHORI-243 Ovis aries genomic clone ... 44 6.2 1
(DE395131) Bombyx mori genomic DNA, BAC clone:16I4A. 44 6.2 1
(CZ920688) 1098415535674 CHORI-243 Ovis aries genomic clone ... 44 6.2 1
(CU285900) Equus caballus GSS, BAC clone CH241-449J7, T7 end... 44 6.2 1
(CT547378) A BAC library has been constructed from cultivar ... 44 6.2 1
(CT331051) Sus scrofa genomic clone CH242-384M19, genomic su... 44 6.2 1
(CG956924) MBEHA12TR mth2 Medicago truncatula genomic clone ... 44 6.2 1
(CG956265) MBEHR45TR mth2 Medicago truncatula genomic clone ... 44 6.2 1
(CG937246) MBEJW04TR mth2 Medicago truncatula genomic clone ... 44 6.2 1
(CG428744) ZMMBBb0242J17.r ZMMBBb Zea mays subsp. mays genom... 44 6.2 1
(CG247832) OGYCB75TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 6.2 1
(CG247816) OGYCB75TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 6.2 1
(BH579322) BOGBE10TR BOGB Brassica oleracea genomic clone BO... 44 6.2 1
(AG257941) Lotus japonicus DNA, clone:LjT45b21_not. 44 6.2 1
(DW736502) MSAM045290_0681_2482 LCM-dissected maize shoot ap... 44 6.2 1
(DW277998) UI-S-HH0-adg-i-23-0-UI.s1 UI-S-HH0 Euprymna scolo... 44 6.2 1
(DB949453) Manihot esculenta mRNA, clone: CAS01_034_D02, 3'end. 44 6.2 1
(DB914733) Idiosepius paradoxus cDNA, clone:Ip_aB_017_D24, 5... 44 6.2 1
(DB830490) Nilaparvata lugens mRNA, EST clone:NLNB8054, 5' e... 44 6.2 1
(CJ236302) Mus musculus adult male liver cDNA, RIKEN full-le... 44 6.2 1
(BW466847) Ciona intestinalis cDNA, clone:cijv424l10, 3'end,... 44 6.2 1
(BW446103) Ciona intestinalis cDNA, clone:cijv424l10, 5'end,... 44 6.2 1
(BW277263) Ciona intestinalis cDNA, clone:cign078e11, 5' end... 44 6.2 1
(BW172198) Ciona intestinalis cDNA, clone:rcinc021k06, 3' en... 44 6.2 1
(BW157945) Ciona intestinalis cDNA, clone:rcigd033e19, 3' en... 44 6.2 1
(BW156745) Ciona intestinalis cDNA, clone:rcigd002i12, 3' en... 44 6.2 1
(BW142654) Ciona intestinalis cDNA, clone:rcign062f09, 3' en... 44 6.2 1
(BW138973) Ciona intestinalis cDNA, clone:rcign051d14, 3' en... 44 6.2 1
(BW106357) Ciona intestinalis cDNA, clone:rcicl038c05, 3' en... 44 6.2 1
(BW087915) Ciona intestinalis cDNA, clone:rcilv051f06, 3' en... 44 6.2 1
(BW087218) Ciona intestinalis cDNA, clone:rcilv048h20, 3' en... 44 6.2 1
(BW085947) Ciona intestinalis cDNA, clone:rcilv043l13, 3' en... 44 6.2 1
(BW014002) Ciona intestinalis cDNA, clone:rcibd049o02, 3' en... 44 6.2 1
(BU496717) PfESToab53h06.y1 Plasmodium falciparum 3D7 asexua... 44 6.2 1
(BQ948131) AGENCOURT_8865823 NIH_MGC_101 Homo sapiens cDNA c... 44 6.2 1
(BP000565) Ciona intestinalis cDNA, clone:cilv30b12, 5' end,... 44 6.2 1
(BP000563) Ciona intestinalis cDNA, clone:cilv30b10, 5' end,... 44 6.2 1
(FF906140) CBWU37378.g1 Yutaka Satou unpublished cDNA librar... 44 6.2 1
(FF758799) XABT65401.rev Gateway compatible cien cDNA librar... 44 6.2 1
(EX244802) PY03100X1B03.f1 PY03 Carica papaya cDNA, mRNA seq... 44 6.2 1
(AV890119) Ciona intestinalis cDNA, clone:rcilv30b10, 3' end... 44 6.2 1
(AV881374) Ciona intestinalis cDNA, clone:rcicl61h16, 3' end... 44 6.2 1
(AV871333) Ciona intestinalis cDNA, clone:rcieg26l07, 3' end... 44 6.2 1
(L43967) Mycoplasma genitalium G37, complete genome. 44 6.2 1
(CP001185) Thermosipho africanus TCF52B, complete genome. 44 6.2 1
(CP000082) Psychrobacter arcticus 273-4, complete genome. 44 6.2 1
(AP006585) Synechocystis sp. PCC 6803 plasmid pSYSX DNA, com... 44 6.2 1
(AC210553) Populus trichocarpa clone POP073-N11, complete se... 36 6.2 5
(EK068241) 1092960152719 Global-Ocean-Sampling_GS-31-01-01-1... 34 6.2 2
(BX255930) Zebrafish DNA sequence from clone DKEY-101K6 in l... 36 6.2 3
(AP002379) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 40 6.4 7
(CT027599) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 6.8 3
(CT827950) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 7.1 4
(DQ366035) Clostridium perfringens strain CW92 plasmid pCW3,... 32 7.1 5
(AC147995) Mus musculus BAC clone RP24-294O4 from 8, complet... 40 7.1 4
(AC111285) Rattus norvegicus clone CH230-55C5, *** SEQUENCIN... 40 7.2 6
(AC102116) Mus musculus chromosome 3, clone RP23-149A10, com... 34 7.4 5
(AC174277) Medicago truncatula clone mth2-5i22, complete seq... 36 7.4 7
(C90638) Dictyostelium discoideum slug cDNA, clone SSI257. 34 7.4 2
(AC124952) Medicago truncatula clone mth2-24m24, complete se... 34 7.4 6
(AM287882) Prunus persica EST, clone Skin21G06. 36 7.6 2
(AC165709) Bos taurus clone CH240-166C5, WORKING DRAFT SEQUE... 40 7.6 4
(AB231865) Spisula solidissima gene for zinc finger protein ... 40 7.7 3
(CU467886) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 7.7 6
(CU062477) M.truncatula DNA sequence from clone MTH2-172L14 ... 34 7.8 6
(AC230839) Bos taurus clone CH240-498E10, WORKING DRAFT SEQU... 40 7.8 2
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 32 8.0 10
(AL713976) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 38 8.1 5
(AC083775) Homo sapiens chromosome 7 clone RP11-776N22 map 7... 40 8.1 6
(AC021011) Homo sapiens BAC clone RP11-32K22 from 4, complet... 40 8.5 2
(AC148527) Medicago truncatula clone mth2-49g13, complete se... 38 8.5 3
(FH452173) CHO_OF4324xb17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 8.7 2
(AL672220) Human DNA sequence from clone RP11-17C2 on chromo... 36 8.7 5
(EJ821000) 1093017537837 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.7 3
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 42 8.7 15
(AC220626) Bos taurus clone CH240-352B8, WORKING DRAFT SEQUE... 34 8.8 6
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 30 9.1 10
(CT030180) M.truncatula DNA sequence from clone MTH2-177C12 ... 36 9.1 6
(AU284803) Dictyostelium discoideum gamete cDNA clone:FC-BL1... 34 9.3 2
(AM486782) Vitis vinifera contig VV78X061763.5, whole genome... 34 9.3 3
(CR956399) M.truncatula DNA sequence from clone MTH2-7L7 on ... 32 9.3 6
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 9.3 10
(AE017245) Mycoplasma synoviae 53, complete genome. 32 9.4 14
(AC205193) Pan troglodytes chromosome 1 clone CH251-680O14, ... 40 9.6 4

>(AU075922) Dictyostelium discoideum slug cDNA, clone SSA112.
Length = 585

Score = 617 bits (311), Expect(2) = 0.0
Identities = 311/311 (100%)
Strand = Plus / Plus


Query: 257 ttgctgatagattaaacaatgaattaaataatatgtgctttttaatgatttcaaagattg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgctgatagattaaacaatgaattaaataatatgtgctttttaatgatttcaaagattg 316


Query: 317 aagtaaatcgtccaagtggtttagtttccattgataaagttggttctgattggttaaaaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagtaaatcgtccaagtggtttagtttccattgataaagttggttctgattggttaaaaa 376


Query: 377 atagaaaaacattaattacaatcgatacaacctcaaatagtgaagatattaatgaaatct 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atagaaaaacattaattacaatcgatacaacctcaaatagtgaagatattaatgaaatct 436


Query: 437 taaaaagaaatttacaaaatataaaagaatctcaaatttatgattttgaggaatatcttt 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taaaaagaaatttacaaaatataaaagaatctcaaatttatgattttgaggaatatcttt 496


Query: 497 caaatccaactcgtgattggttaaataaatcattagttttataataaagccatatttata 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaatccaactcgtgattggttaaataaatcattagttttataataaagccatatttata 556


Query: 557 tttttaaatta 567
|||||||||||
Sbjct: 557 tttttaaatta 567

Score = 494 bits (249), Expect(2) = 0.0
Identities = 249/249 (100%)
Strand = Plus / Plus


Query: 1 aaagctcatttacattcatttaaacatcatgcatcatcagttaatggaattttacttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagctcatttacattcatttaaacatcatgcatcatcagttaatggaattttacttggt 60


Query: 61 aaagccgataaaaactcaattttaattacagatataataccactttttcatacacaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagccgataaaaactcaattttaattacagatataataccactttttcatacacaaact 120


Query: 121 ttattaccgatgtttgaagttgcaatgattcagattgaaaaatattgtagagataataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttattaccgatgtttgaagttgcaatgattcagattgaaaaatattgtagagataataat 180


Query: 181 atagatatggttggatattatcattcaaatcaatgtatagcaaacgaattagaacctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atagatatggttggatattatcattcaaatcaatgtatagcaaacgaattagaacctgaa 240


Query: 241 ccaatagct 249
|||||||||
Sbjct: 241 ccaatagct 249

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 883,837,624
Number of extensions: 59647847
Number of successful extensions: 5620687
Number of sequences better than 10.0: 320
Length of query: 614
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 591
Effective length of database: 99,442,330,388
Effective search space: 58770417259308
Effective search space used: 58770417259308
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04308-1 (Contig-U04308-1Q) /CSM_Contig/Contig-U04308-1Q.Seq.d
(614 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55FM0) RecName: Full=UPF0172 protein; 362 4e-99
FN357398_2(FN357398|pid:none) Schistosoma mansoni genome sequenc... 95 2e-18
BT073196_1(BT073196|pid:none) Oncorhynchus mykiss clone omyk-evn... 94 3e-18
BT073338_1(BT073338|pid:none) Oncorhynchus mykiss clone omyk-evn... 94 3e-18
BT079754_1(BT079754|pid:none) Esox lucius clone eluc-evq-509-171... 94 4e-18
BT048988_1(BT048988|pid:none) Salmo salar clone ssal-evf-502-190... 92 1e-17
BT050131_1(BT050131|pid:none) Salmo salar clone ssal-sjb-009-329... 91 2e-17
BT075540_1(BT075540|pid:none) Osmerus mordax clone omor-eva-512-... 89 1e-16
BC042318_1(BC042318|pid:none) Danio rerio zgc:55317, mRNA (cDNA ... 89 1e-16
DQ444286_1(DQ444286|pid:none) Salicornia bigelovii putative CPF ... 89 1e-16
AM431601_4(AM431601|pid:none) Vitis vinifera contig VV78X028231.... 83 7e-15
AY087233_1(AY087233|pid:none) Arabidopsis thaliana clone 33108 m... 80 5e-14
AY368908_1(AY368908|pid:none) Homo sapiens CGI-112 protein mRNA,... 76 9e-13
BC046080_1(BC046080|pid:none) Danio rerio cox4 neighbor, mRNA (c... 76 9e-13
AF534570_1(AF534570|pid:none) Chlamydomonas reinhardtii chloroph... 75 1e-12
(Q9DB76) RecName: Full=UPF0172 protein FAM158A; &AB053120_3(AB0... 75 1e-12
BC084119_1(BC084119|pid:none) Xenopus laevis hypothetical LOC495... 75 2e-12
AM910991_374(AM910991|pid:none) Plasmodium knowlesi strain H chr... 74 4e-12
FN314210_1(FN314210|pid:none) Schistosoma japonicum isolate Anhu... 72 1e-11
(Q5FVL2) RecName: Full=Neighbor of COX4; &BC089914_1(BC089914|p... 72 2e-11
AY815788_1(AY815788|pid:none) Schistosoma japonicum SJCHGC01804 ... 72 2e-11
AK161438_1(AK161438|pid:none) Mus musculus adult male testis cDN... 71 3e-11
AK061854_1(AK061854|pid:none) Oryza sativa Japonica Group cDNA c... 70 5e-11
(O70378) RecName: Full=Neighbor of COX4; &AF052621_1(AF052621|p... 69 8e-11
BT081203_1(BT081203|pid:none) Caligus clemensi clone ccle-evs-50... 69 8e-11
(Q32KL5) RecName: Full=Neighbor of COX4; &BC110035_1(BC110035|p... 69 8e-11
AK342555_1(AK342555|pid:none) Acyrthosiphon pisum ACYPI002488 mR... 69 1e-10
AK042704_1(AK042704|pid:none) Mus musculus 7 days neonate cerebe... 68 2e-10
(O43402) RecName: Full=Neighbor of COX4; AltName: Full=Protein F... 67 5e-10
AY892316_1(AY892316|pid:none) Synthetic construct Homo sapiens c... 67 5e-10
BT064262_1(BT064262|pid:none) Zea mays full-length cDNA clone ZM... 67 5e-10
DQ782747_1(DQ782747|pid:none) Polytomella parva antenna size reg... 60 4e-08
CP001324_659(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 59 8e-08
T21347(T21347) hypothetical protein F25H2.4 - Caenorhabditis ele... 59 8e-08
BC106462_1(BC106462|pid:none) Xenopus laevis hypothetical protei... 54 5e-06
AM494944_31(AM494944|pid:none) Leishmania braziliensis chromosom... 45 0.002
CR954218_93(CR954218|pid:none) Ostreococcus tauri strain OTTH059... 40 0.068
AL844505_40(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 37 0.34
AX888209_1(AX888209|pid:none) Sequence 4072 from Patent EP1033401. 36 0.75
AM946015_1795(AM946015|pid:none) Streptococcus uberis 0140J comp... 35 1.7
FN357296_31(FN357296|pid:none) Schistosoma mansoni genome sequen... 35 2.2
CP000965_92(CP000965|pid:none) Klebsiella pneumoniae 342 plasmid... 35 2.2
AF036897_1(AF036897|pid:none) Chironomus pallidivittatus special... 35 2.2
AF036896_1(AF036896|pid:none) Chironomus pallidivittatus special... 35 2.2
A70110(A70110) conserved hypothetical protein BB0081 - Lyme dise... 34 2.9
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 34 3.7
CP001251_804(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 33 4.9
U24265_1(U24265|pid:none) Chironomus thummi special lobe-specifi... 33 4.9
BC116617_1(BC116617|pid:none) Danio rerio zgc:136808, mRNA (cDNA... 33 4.9
AE008692_751(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 33 4.9
FM992690_372(FM992690|pid:none) Candida dubliniensis CD36 chromo... 33 4.9
CR382127_342(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 33 6.4
CY021997_1(CY021997|pid:none) Influenza A virus (A/Albany/4/1967... 33 8.3
A88601(A88601)protein Y49E10.8 [imported] - Caenorhabditis elegans 33 8.3
AE017263_207(AE017263|pid:none) Mesoplasma florum L1 complete ge... 33 8.3
AE017308_515(AE017308|pid:none) Mycoplasma mobile 163K complete ... 33 8.3
CP000728_1311(CP000728|pid:none) Clostridium botulinum F str. La... 33 8.3

>(Q55FM0) RecName: Full=UPF0172 protein;
Length = 192

Score = 362 bits (930), Expect = 4e-99
Identities = 179/179 (100%), Positives = 179/179 (100%)
Frame = +1

Query: 1 KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN 180
KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN
Sbjct: 14 KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN 73

Query: 181 IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG 360
IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG
Sbjct: 74 IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG 133

Query: 361 SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL 537
SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL
Sbjct: 134 SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL 192

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 744,194,430
Number of extensions: 12388705
Number of successful extensions: 44650
Number of sequences better than 10.0: 57
Number of HSP's gapped: 44547
Number of HSP's successfully gapped: 57
Length of query: 204
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 81
Effective length of database: 659,166,577
Effective search space: 53392492737
Effective search space used: 53392492737
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.85 gvh: 0.39 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U04308-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0