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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04285-1
Contig ID Contig-U04285-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04285-1 (Contig-U04285-1Q) /CSM_Contig/Contig-U04285-1Q.Seq.d
CTTTTAAATTTTTTTTAAATAAAAAAATAAAAAATGTCAGAAGTCGAAAA
GAAAGAAGAAGAAACCACCACCACTACCACTGTCGAAAAGACTGAGGAAA
AGAAAGAAGAAACCTCTTCATTTGCCCCAGCCGCTGAAATAAAAGAATAT
GCTGCCGATGTTGAACCAAACGTTGAATATGAAGCAACCCTTAAAAGAGA
TGTTGTTGAAGTTAAAACCAACGAAGAAAACGAAGATACTTTATTTGAAA
TCCGTGCAAAATTATACAGATTTGATACAGACCCATCACCACAATGGAAA
GAAAGAGGTACTGGTAATGTTAGATTCTTAGAAGATAAAGATTCAAAGAG
AATCAGAGTTGTCATGAGAAGAGACAAAACATTAAAAGTTTGTTTAAATC
ATCACATCTCACCAGCTTTATCATTAGGTGAAATGACTGGTAGTGATAAA
TCATGGGTTTGGAAATGTCCAAAGGATTTCTCAGATGAAGAAAAACCAGA
AGGTGTTGAAGAGTTATTTGCAATTAGATTCGCCACCCCAGAAAATGCTG
GACTTTTCAAAACTGAATTCCAAAAATGTCAAGCCAAAAATGAAGCAATT
GAAAAAAAAACTGAATAAATAAATAATTAATCCCATCATATATCAAAACC
ACAAATATAAAACCAAAATTAAAACTGTCCAATCAATAAACACAATATAA
ACCACACTACAAAAAAAAAAAAAAAA
Gap no gap
Contig length 726
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 247118
End point 247844
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U04285
List of clone(s) 

est1=VSI846E,1,707
est2=SLK508E,99,727
Translated Amino Acid sequence 
llnff*ikk*KMSEVEKKEEETTTTTTVEKTEEKKEETSSFAPAAEIKEYAADVEPNVEY
EATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQWKERGTGNVRFLEDKDSKRIRV
VMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPKDFSDEEKPEGVEELFAIRFATP
ENAGLFKTEFQKCQAKNEAIEKKTE*inn*shhiskpqi*nqn*ncpinkhninhttkkk
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
llnff*ikk*KMSEVEKKEEETTTTTTVEKTEEKKEETSSFAPAAEIKEYAADVEPNVEY
EATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQWKERGTGNVRFLEDKDSKRIRV
VMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPKDFSDEEKPEGVEELFAIRFATP
ENAGLFKTEFQKCQAKNEAIEKKTE*inn*shhiskpqi*nqn*ncpinkhninhttkkk
kk


Frame B:
f*iffk*knkkcqkskrkkkkppplplskrlrkrkkkplhlpqplk*knmlpmlnqtlnm
kqplkemllklkptkktkilylksvqnytdliqthhhngkkevlvmlds*kikiqresel
s*eetkh*kfv*iitshqlyh*vk*lvvinhgfgnvqrisqmkknqkvlksylqldsppq
kmldfsklnsknvkpkmkqlkkklnk*iinpiiyqnhkyktkiktvqsinti*ttlqkkk
k


Frame C:
fkfflnkkiknvrsrkerrrnhhhyhcrkd*gkerrnlficpsr*nkriccrc*tkr*i*
snp*krcc*s*nqrrkrryfi*npckiiqi*yrpittmerkryw*c*ilrr*rfkenqsc
hekrqnikslfksshltsfiir*ndw***imglemskgflr*rktrrc*rvicn*irhpr
kcwtfqn*ipkmssqk*sn*kkn*ink*lipsyikttnikpklklsnq*tqykphykkkk
k
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04285-1 (Contig-U04285-1Q)
/CSM_Contig/Contig-U04285-1Q.Seq.d
         (726 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04285-1 (Contig-U04285-1Q) /CSM_Contig/Conti...  1287  0.0
Contig-U04554-1 (Contig-U04554-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12190-1 (Contig-U12190-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13607-1 (Contig-U13607-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U13396-1 (Contig-U13396-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U12565-1 (Contig-U12565-1Q) /CSM_Contig/Conti...    36  0.051

>Contig-U04285-1 (Contig-U04285-1Q) /CSM_Contig/Contig-U04285-1Q.Seq.d
          Length = 726

 Score = 1287 bits (649), Expect = 0.0
 Identities = 667/676 (98%)
 Strand = Plus / Plus

                                                                       
Query: 35  tgtcagaagtcgaaaagaaagaagaagaaaccaccaccactaccactgtcgaaaagactg 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35  tgtcagaagtcgaaaagaaagaagaagaaaccaccaccactaccactgtcgaaaagactg 94

                                                                       
Query: 95  aggaaaagaaagaagaaacctcttcatttgccccagccgctgaaataaaagaatatgctg 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  aggaaaagaaagaagaaacctcttcatttgccccagccgctgaaataaaagaatatgctg 154

                                                                       
Query: 155 ccgatgttgaaccaaacgttgaatatgaagcaacccttaaaagagatgttgttgaagtta 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ccgatgttgaaccaaacgttgaatatgaagcaacccttaaaagagatgttgttgaagtta 214

                                                                       
Query: 215 aaaccaacgaagaaaacgaagatactttatttgaaatccgtgcaaaattatacagatttg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aaaccaacgaagaaaacgaagatactttatttgaaatccgtgcaaaattatacagatttg 274

                                                                       
Query: 275 atacagacccatcaccacaatggaaagaaagaggtactggtaatgttagattcttagaag 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atacagacccatcaccacaatggaaagaaagaggtactggtaatgttagattcttagaag 334

                                                                       
Query: 335 ataaagattcaaagagaatcagagttgtcatgagaagagacaaaacattaaaagtttgtt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ataaagattcaaagagaatcagagttgtcatgagaagagacaaaacattaaaagtttgtt 394

                                                                       
Query: 395 taaatcatcacatctcaccagctttatcattaggtgaaatgactggtagtgataaatcat 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taaatcatcacatctcaccagctttatcattaggtgaaatgactggtagtgataaatcat 454

                                                                       
Query: 455 gggtttggaaatgtccaaaggatttctcagatgaagaaaaaccagaaggtgttgaagagt 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gggtttggaaatgtccaaaggatttctcagatgaagaaaaaccagaaggtgttgaagagt 514

                                                                       
Query: 515 tatttgcaattagattcgccaccccagaaaatgctggacttttcaaaactgaattccaaa 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tatttgcaattagattcgccaccccagaaaatgctggacttttcaaaactgaattccaaa 574

                                                                       
Query: 575 aatgtcaagccaaaaatgaagcaattgnnnnnnnnnctgaataaataaataattaatccc 634
           |||||||||||||||||||||||||||         ||||||||||||||||||||||||
Sbjct: 575 aatgtcaagccaaaaatgaagcaattgaaaaaaaaactgaataaataaataattaatccc 634

                                                                       
Query: 635 atcatatatcaaaaccacaaatataaaaccaaaattaaaactgtccaatcaataaacaca 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atcatatatcaaaaccacaaatataaaaccaaaattaaaactgtccaatcaataaacaca 694

                           
Query: 695 atataaaccacactac 710
           ||||||||||||||||
Sbjct: 695 atataaaccacactac 710


 Score = 32.2 bits (16), Expect = 0.79
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  cttttaaatttttttt 16
          ||||||||||||||||
Sbjct: 1  cttttaaatttttttt 16


>Contig-U04554-1 (Contig-U04554-1Q) /CSM_Contig/Contig-U04554-1Q.Seq.d
          Length = 896

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  aaaccaccaccactaccact 81
           ||||||||||||||||||||
Sbjct: 549 aaaccaccaccactaccact 530


 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 411 accagctttatcattag 427
           |||||||||||||||||
Sbjct: 568 accagctttatcattag 584


>Contig-U12190-1 (Contig-U12190-1Q) /CSM_Contig/Contig-U12190-1Q.Seq.d
          Length = 1305

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 46   gaaaagaaagaagaagaaa 64
            |||||||||||||||||||
Sbjct: 1254 gaaaagaaagaagaagaaa 1272


 Score = 30.2 bits (15), Expect = 3.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 97   gaaaagaaagaagaa 111
            |||||||||||||||
Sbjct: 1254 gaaaagaaagaagaa 1268


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,036
Number of Sequences: 6905
Number of extensions: 15036
Number of successful extensions: 3601
Number of sequences better than 10.0: 350
length of query: 726
length of database: 5,674,871
effective HSP length: 16
effective length of query: 710
effective length of database: 5,564,391
effective search space: 3950717610
effective search space used: 3950717610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.15
Homology vs DNA 
Query= Contig-U04285-1 (Contig-U04285-1Q) /CSM_Contig/Contig-U04285-1Q.Seq.d
         (726 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269327) Dictyostelium discoideum vegetative cDNA clone:VS...   965   0.0    1
(AU054050) Dictyostelium discoideum slug cDNA, clone SLK508.      638   e-179  1
(AU269326) Dictyostelium discoideum vegetative cDNA clone:VS...   547   e-151  1
(AU060580) Dictyostelium discoideum slug cDNA, clone SLK508.      400   e-107  1
(DL173404) Methods for Identifying the Target of a Compound ...    54   7e-10  4
(AX488964) Sequence 6264 from Patent WO02053728.                   54   7e-10  4
(AR550088) Sequence 5219 from patent US 6747137.                   54   9e-10  4
(AF049868) Candida albicans Yrb1p (YRB1) gene, complete cds.       54   1e-08  4
(CS593957) Sequence 290 from Patent WO2007039319.                  54   1e-07  3
(CS532191) Sequence 290 from Patent EP1770171.                     54   1e-07  3
(CZ281564) cp17f11.f Candida parapsilosis Random Genomic Lib...    42   1e-06  3
(AL404401) T7 end of clone AT0AA016B02 of library AT0AA from...    54   2e-06  2
(CR382125) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    52   2e-05  2
(FE851287) CAFP1637.fwd CAFP Pichia stipitis aerobic xylose ...    42   3e-05  2
(FE850999) CAFP1483.fwd CAFP Pichia stipitis aerobic xylose ...    42   3e-05  2
(FE851286) CAFP1637.rev CAFP Pichia stipitis aerobic xylose ...    42   3e-05  2
(FE850998) CAFP1483.rev CAFP Pichia stipitis aerobic xylose ...    42   3e-05  2
(AZ925677) 4910.ez34o09.s1 Saccharomyces paradoxus N17 Sacch...    46   0.012  2
(BQ488369) 22-E8885-006-003-L05-T3 Sugar beet MPIZ-ADIS-006 ...    50   0.013  2
(BQ590738) E012596-024-018-M23-SP6 MPIZ-ADIS-024-storage roo...    50   0.015  2
(FG343847) SF_24-195F Bv_T0 Beta vulgaris subsp. vulgaris cD...    50   0.016  2
(BE590439) SB179 Sugar Beet germination cDNA library Beta vu...    50   0.016  2
(DB643881) Saccharomyces cerevisiae mRNA, clone: S03052-29_E...    46   0.016  2
(Z33503) S.cerevisiae (H9) HTN1 gene for Ran binding protein...    46   0.017  2
(DL338844) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       46   0.017  2
(DJ205293) Method for identification of useful proteins deri...    46   0.017  2
(L38489) Saccharomyces cerevisiae perinuclear array-localise...    46   0.019  2
(FG344906) SF_16-e09 Bv_T1 Beta vulgaris subsp. vulgaris cDN...    50   0.020  2
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    52   0.030  1
(EL912972) INIT2_55_F05.g2_A006 G5 trophont cDNA (INIT2) Ich...    40   0.052  3
(DB666303) Saccharomyces cerevisiae mRNA, clone: Y104_G23_F....    44   0.072  2
(EL905647) INIT2_4_H06.b1_A006 G5 trophont cDNA (INIT2) Icht...    40   0.074  3
(EL905581) INIT2_3_B10.g1_A006 G5 trophont cDNA (INIT2) Icht...    40   0.074  3
(EL905539) INIT2_3_B10.b1_A006 G5 trophont cDNA (INIT2) Icht...    40   0.074  3
(CJ362223) Molgula tectiformis cDNA, cleaving embryo clone:m...    50   0.12   1
(X65925) S.cerevisiae NTH gene for neutral trehalase.              46   0.12   2
(FK158714) XABT185489.b1 Gateway compatible cien cDNA librar...    38   0.21   2
(FK136923) XABT171996.b1 Gateway compatible cien cDNA librar...    38   0.25   2
(FK067552) XABT128385.b1 Gateway compatible cien cDNA librar...    38   0.26   2
(FK111699) XABT156698.b1 Gateway compatible cien cDNA librar...    38   0.27   2
(Z48008) S.cerevisiae chromosome IV cosmid 8119.                   46   0.76   2
(AL020985) Caenorhabditis elegans DNA *** SEQUENCING IN PROG...    44   0.78   3
(AL881956) Xenopus tropicalis EST, clone TEgg043l03 5'.            32   0.92   3
(AL653420) Xenopus tropicalis EST, clone TGas042h01 5'.            32   0.92   3
(AC113767) Rattus norvegicus clone CH230-88H11, WORKING DRAF...    34   0.97   2
(AC113795) Rattus norvegicus clone CH230-253E4, WORKING DRAF...    34   0.98   2
(DT283954) JGI_CAAV11272.rev CAAV Pimephales promelas testis...    34   1.3    2
(DT282108) JGI_CAAV10205.fwd CAAV Pimephales promelas testis...    34   1.3    2
(DT279711) JGI_CAAV8798.fwd CAAV Pimephales promelas testis ...    34   1.3    2
(EL819104) CBWN4259.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ...    32   1.3    3
(EL824340) CBWN7714.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ...    32   1.4    3
(EL836088) CBWN16708.b1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    32   1.5    3
(DT413367) JGI_CABI11880.fwd NIH_XGC_tropOvi1 Xenopus (Silur...    32   1.6    3
(CX319527) JGI_XZT8141.fwd NIH_XGC_tropTad5 Xenopus (Siluran...    32   1.6    3
(EU401856) Austrelaps superbus superbinin-1 precursor, gene,...    46   1.9    1
(EU401855) Hoplocephalus stephensii stephenin-2 precursor, g...    46   1.9    1
(EU401854) Hoplocephalus stephensii truncated stephenin-3 pr...    46   1.9    1
(EU401852) Notechis scutatus tigerin-4 precursor, gene, comp...    46   1.9    1
(EU401850) Rhinoplocephalus nigrescens nigrescinin-1 precurs...    46   1.9    1
(EU401849) Pseudechis porphyriacus blackelin-5 precursor, ge...    46   1.9    1
(EU401848) Pseudechis porphyriacus blackelin-4 precursor, ge...    46   1.9    1
(EU401846) Pseudechis australis mulgin-5 precursor, gene, co...    46   1.9    1
(EU401844) Oxyuranus microlepidotus microlepidin-5 precursor...    46   1.9    1
(EU401842) Oxyuranus scutellatus Kunitz toxin precursor, gen...    46   1.9    1
(CR380949) Candida glabrata strain CBS138 chromosome C compl...    46   1.9    1
(DL265766) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       46   1.9    1
(DJ132215) Method for identification of useful proteins deri...    46   1.9    1
(DJ025872) Genome-wide DNA marker of Saccharomyces cerevisiae.     46   1.9    1
(FI067432) CHO_OF7304xl10r1.ab1 CHO_OF7 Nicotiana tabacum ge...    46   1.9    1
(FI067361) CHO_OF7304xl10f1.ab1 CHO_OF7 Nicotiana tabacum ge...    46   1.9    1
(ET810787) CHO_OF719xb23f1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.9    1
(EK189789) 1095460014602 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    1
(DB641657) Saccharomyces cerevisiae mRNA, clone: S03052-19_H...    46   1.9    1
(CJ996314) Saccharomyces pastorianus mRNA, clone: C027-24, 5...    46   1.9    1
(CJ992399) Saccharomyces pastorianus mRNA, clone: A005-01, 5...    46   1.9    1
(T37774) EST103008 S. cerevisiae strain X2180-1A Saccharomyc...    46   1.9    1
(AC233003) Lama pacos clone CH246-442M5, WORKING DRAFT SEQUE...    32   3.6    2
(DR982419) JGI_AOKF438.fwd AOKF Acropora palmata spawned egg...    32   4.6    3
(DR983726) JGI_AOKF1314.fwd AOKF Acropora palmata spawned eg...    32   4.7    3
(FE969795) Md0918 Venturia inaequalis challenged cDNA suppre...    32   4.8    2
(CX915367) JGI_CAAN5032.fwd NIH_XGC_tropTe4 Xenopus (Siluran...    32   5.1    3
(DX554089) GH_MBb0074D02r GH_MBb Gossypium hirsutum genomic ...    42   5.9    2
(EZ040747) TSA: Acropora millepora SeqIndex8047, mRNA sequence.    32   6.0    3
(AC171142) Cavia porcellus clone CH234-487I3, complete seque...    42   7.0    2
(AM050154) Bungarus multicinctus b6 chain gene for beta-bung...    44   7.4    1
(AM050153) Bungarus multicinctus b5 chain gene for beta-bung...    44   7.4    1
(AL732370) Mouse DNA sequence from clone RP23-413I21 on chro...    44   7.4    1
(GC744751) Sequence 59996 from patent US 6812339.                  44   7.4    1
(GC698253) Sequence 13498 from patent US 6812339.                  44   7.4    1
(AL117207) Caenorhabditis elegans YAC Y60A3A.                      44   7.4    1
(AC104985) Homo sapiens chromosome 18, clone RP11-379L18, co...    44   7.4    1
(CU695155) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU469158) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(BH429012) BOGIO03TR BOGI Brassica oleracea genomic clone BO...    44   7.4    1
(EK436466) 1095521051322 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK402674) 1095469546491 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK131845) 1093009953085 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EI591879) Wang-VSVGgfp-Jurkat-454-Avr-212015_0390_2500 Wang...    44   7.4    1
(DY963809) CLSM14045.b1_I08.ab1 CLS(LMS) lettuce sativa Lact...    44   7.4    1
(CO483412) GQ0202.TB_O20 GQ020: Clean ROOTS systems -Diurnal...    44   7.4    1
(FC710994) CAXY6648.fwd CAXY Lottia gigantea from male gonad...    44   7.4    1
(CP000759) Ochrobactrum anthropi ATCC 49188 chromosome 2, co...    44   7.4    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    44   7.4    1
(AC175210) Cavia porcellus clone CH234-507A3, WORKING DRAFT ...    42   7.5    3
(BW253521) Ciona intestinalis cDNA, clone:citb096l23, 5' end...    36   8.4    2
(AC146627) Papio anubis clone RP41-352A17, WORKING DRAFT SEQ...    40   8.7    3
(BW289950) Ciona intestinalis cDNA, clone:cigd003n04, 5' end...    36   9.0    2
(AC193290) Colobus guereza clone CH272-427F13, WORKING DRAFT...    40   9.4    3
(BW291918) Ciona intestinalis cDNA, clone:cigd045o23, 5' end...    36   10.0   2

>(AU269327) Dictyostelium discoideum vegetative cDNA clone:VSI846,
           3' end single read.
          Length = 638

 Score =  965 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Plus


Query: 115 tcttcatttgccccagccgctgaaataaaagaatatgctgccgatgttgaaccaaacgtt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  tcttcatttgccccagccgctgaaataaaagaatatgctgccgatgttgaaccaaacgtt 105


Query: 175 gaatatgaagcaacccttaaaagagatgttgttgaagttaaaaccaacgaagaaaacgaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gaatatgaagcaacccttaaaagagatgttgttgaagttaaaaccaacgaagaaaacgaa 165


Query: 235 gatactttatttgaaatccgtgcaaaattatacagatttgatacagacccatcaccacaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gatactttatttgaaatccgtgcaaaattatacagatttgatacagacccatcaccacaa 225


Query: 295 tggaaagaaagaggtactggtaatgttagattcttagaagataaagattcaaagagaatc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tggaaagaaagaggtactggtaatgttagattcttagaagataaagattcaaagagaatc 285


Query: 355 agagttgtcatgagaagagacaaaacattaaaagtttgtttaaatcatcacatctcacca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agagttgtcatgagaagagacaaaacattaaaagtttgtttaaatcatcacatctcacca 345


Query: 415 gctttatcattaggtgaaatgactggtagtgataaatcatgggtttggaaatgtccaaag 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gctttatcattaggtgaaatgactggtagtgataaatcatgggtttggaaatgtccaaag 405


Query: 475 gatttctcagatgaagaaaaaccagaaggtgttgaagagttatttgcaattagattcgcc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gatttctcagatgaagaaaaaccagaaggtgttgaagagttatttgcaattagattcgcc 465


Query: 535 accccagaaaatgctggacttttcaaaactgaattccaaaaatgtcaagccaaaaatgaa 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 accccagaaaatgctggacttttcaaaactgaattccaaaaatgtcaagccaaaaatgaa 525


Query: 595 gcaattg 601
           |||||||
Sbjct: 526 gcaattg 532

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 677,021,992
Number of extensions: 39672918
Number of successful extensions: 3123188
Number of sequences better than 10.0: 110
Length of query: 726
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 702
Effective length of database: 99,340,224,878
Effective search space: 69736837864356
Effective search space used: 69736837864356
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U04285-1 (Contig-U04285-1Q) /CSM_Contig/Contig-U04285-1Q.Seq.d
         (726 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KD9) RecName: Full=Ran-specific GTPase-activating protein ho...   342   7e-93
CU928171_694(CU928171|pid:none) Kluyveromyces thermotolerans str...   152   1e-35
AP007166_286(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...   150   5e-35
CR380949_173(CR380949|pid:none) Candida glabrata strain CBS138 c...   150   5e-35
(Q09717) RecName: Full=Ran-specific GTPase-activating protein 1;...   149   9e-35
CR382128_591(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   149   1e-34
D76431_1(D76431|pid:none) Schizosaccharomyces pombe mRNA for ran...   146   6e-34
X56045_1(X56045|pid:none) Mouse mRNA (clone lambda-19) for hypot...   142   8e-33
AK153074_1(AK153074|pid:none) Mus musculus bone marrow macrophag...   142   8e-33
(P34022) RecName: Full=Ran-specific GTPase-activating protein; A...   142   8e-33
L25255_1(L25255|pid:none) Mus musculus Ran/TC4 binding protein (...   142   1e-32
S40475(S40475)Ran-specific GTPase-activating protein - human          142   1e-32
BC071998_1(BC071998|pid:none) Homo sapiens cDNA clone MGC:88701 ...   142   1e-32
D38076_1(D38076|pid:none) Homo sapiens RanBP1 mRNA for Ran-bindi...   142   1e-32
(P41920) RecName: Full=Ran-specific GTPase-activating protein 1;...   141   2e-32
AM920436_734(AM920436|pid:none) Penicillium chrysogenum Wisconsi...   140   5e-32
BC061426_1(BC061426|pid:none) Xenopus tropicalis RAN binding pro...   139   9e-32
AJ720596_1(AJ720596|pid:none) Gallus gallus mRNA for hypothetica...   138   2e-31
BC067558_1(BC067558|pid:none) Danio rerio RAN binding protein 1,...   138   2e-31
AF364085_1(AF364085|pid:none) Danio rerio Ran binding protein 1 ...   138   2e-31
BT082295_1(BT082295|pid:none) Anoplopoma fimbria clone afim-evh-...   135   1e-30
BT057557_1(BT057557|pid:none) Salmo salar clone ssal-evf-519-251...   135   1e-30
BC133801_1(BC133801|pid:none) Xenopus laevis Ran binding protein...   135   2e-30
BT079783_1(BT079783|pid:none) Esox lucius clone eluc-evq-510-202...   134   2e-30
AF015303_1(AF015303|pid:none) Xenopus laevis small GTPase Ran bi...   134   4e-30
AE017341_61(AE017341|pid:none) Cryptococcus neoformans var. neof...   134   4e-30
JQ1973(JQ1973)HTF9-A protein - mouse                                  134   4e-30
BT073504_1(BT073504|pid:none) Oncorhynchus mykiss clone omyk-evn...   133   6e-30
AF049868_1(AF049868|pid:none) Candida albicans Yrb1p (YRB1) gene...   132   1e-29
L41840_1(L41840|pid:none) Homo sapiens nucleoporin (NUP358) gene...   125   1e-27
PDBN(1RRP)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...   125   1e-27
U19240_1(U19240|pid:none) Human Ran binding protein mRNA, partia...   125   1e-27
(P49792) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...   125   1e-27
D42063_1(D42063|pid:none) Human mRNA for RanBP2 (Ran-binding pro...   125   1e-27
EU961269_1(EU961269|pid:none) Zea mays clone 234140 ran-binding ...   125   2e-27
(Q9ERU9) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...   125   2e-27
EU016516_1(EU016516|pid:none) Nicotiana benthamiana Ran binding ...   124   2e-27
AY093099_1(AY093099|pid:none) Arabidopsis thaliana Ran binding p...   124   2e-27
X97378_1(X97378|pid:none) A.thaliana mRNA for AtRanBP1b protein.      122   1e-26
(Q9LMK7) RecName: Full=Ran-binding protein 1 homolog a; AltName:...   121   2e-26
BC157559_1(BC157559|pid:none) Xenopus tropicalis RAN binding pro...   121   2e-26
AK293502_1(AK293502|pid:none) Homo sapiens cDNA FLJ57507 complet...   121   3e-26
EU967178_1(EU967178|pid:none) Zea mays clone 300042 ran-binding ...   120   3e-26
S57968(S57968) Ran-binding protein 2 - mouse (fragment)  &X87337...   120   3e-26
BC071062_1(BC071062|pid:none) Xenopus laevis Ran binding protein...   120   3e-26
EU961612_1(EU961612|pid:none) Zea mays clone 237001 ran-binding ...   120   4e-26
AK069970_1(AK069970|pid:none) Oryza sativa Japonica Group cDNA c...   119   1e-25
AP008211_903(AP008211|pid:none) Oryza sativa (japonica cultivar-...   118   2e-25
CU638712_3(CU638712|pid:none) Zebrafish DNA sequence from clone ...   117   4e-25
(Q68DN6) RecName: Full=RANBP2-like and GRIP domain-containing pr...   117   4e-25
AK303443_1(AK303443|pid:none) Homo sapiens cDNA FLJ58076 complet...   117   4e-25
BC172352_1(BC172352|pid:none) Synthetic construct Homo sapiens c...   117   4e-25
AB209082_1(AB209082|pid:none) Homo sapiens mRNA for RAN-binding ...   116   6e-25
(P48820) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...   116   8e-25
(Q7Z3J3) RecName: Full=RANBP2-like and GRIP domain-containing pr...   116   8e-25
EF144391_1(EF144391|pid:none) Populus trichocarpa clone PX0019_D...   116   8e-25
EF147922_1(EF147922|pid:none) Populus trichocarpa clone WS0126_A...   116   8e-25
DQ296188_1(DQ296188|pid:none) Brassica rapa clone 25 unknown mRNA.    115   1e-24
AK300352_1(AK300352|pid:none) Homo sapiens cDNA FLJ54456 complet...   115   2e-24
(P0C839) RecName: Full=RANBP2-like and GRIP domain-containing pr...   115   2e-24
(P92985) RecName: Full=Ran-binding protein 1 homolog c;  &BT0249...   114   2e-24
(A6NKT7) RecName: Full=RANBP2-like and GRIP domain-containing pr...   114   3e-24
AC135464_4(AC135464|pid:none) Medicago truncatula clone mth2-17k...   113   5e-24
T22974(T22974) hypothetical protein F59A2.1 - Caenorhabditis ele...   113   5e-24
CP001328_280(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   111   2e-23
EF676871_1(EF676871|pid:none) Picea sitchensis clone WS02756_J20...   109   1e-22
AY814530_1(AY814530|pid:none) Schistosoma japonicum SJCHGC09028 ...   106   6e-22
AY170822_1(AY170822|pid:none) Homo sapiens transformation-relate...   105   2e-21
AY170823_1(AY170823|pid:none) Homo sapiens transformation-relate...   105   2e-21
BT050644_1(BT050644|pid:none) Medicago truncatula clone MTYFT1G-...   105   2e-21
AK302921_1(AK302921|pid:none) Homo sapiens cDNA FLJ59078 complet...   103   4e-21
FN357320_18(FN357320|pid:none) Schistosoma mansoni genome sequen...   102   1e-20
AJ422213_1(AJ422213|pid:none) Babesia divergens mRNA for ran bin...   101   2e-20
AK300927_1(AK300927|pid:none) Homo sapiens cDNA FLJ54173 complet...    99   2e-19
AY810736_1(AY810736|pid:none) Schistosoma japonicum SJCHGC08311 ...    97   7e-19
CU638712_2(CU638712|pid:none) Zebrafish DNA sequence from clone ...    96   9e-19
CR940353_158(CR940353|pid:none) Theileria annulata strain Ankara...    95   2e-18
CR954210_217(CR954210|pid:none) Ostreococcus tauri strain OTTH05...    95   2e-18
AM055942_30(AM055942|pid:none) Toxoplasma gondii RH, genomic DNA...    92   1e-17
AY095055_1(AY095055|pid:none) Drosophila melanogaster LD43045 fu...    91   3e-17
AJ420904_1(AJ420904|pid:none) Plasmodium falciparum mRNA for Ran...    84   5e-15
AF004136_1(AF004136|pid:none) Sus scrofa domestica Ran-binding p...    83   1e-14
AM042542_1(AM042542|pid:none) Sordaria macrospora partial sbp ge...    81   3e-14
CP000590_211(CP000590|pid:none) Ostreococcus lucimarinus CCE9901...    75   2e-12
Y13331_1(Y13331|pid:none) Mus musculus Htf9-a/RanBP1 gene, exon 3.     69   1e-10
CR380959_548(CR380959|pid:none) Candida glabrata strain CBS138 c...    62   1e-08
AK097659_1(AK097659|pid:none) Homo sapiens cDNA FLJ40340 fis, cl...    62   2e-08
CP000499_498(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-08
CR382123_343(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    59   1e-07
EU971545_1(EU971545|pid:none) Zea mays clone 366912 unknown mRNA.      58   3e-07
AM270002_4(AM270002|pid:none) Aspergillus niger contig An02c0070...    56   1e-06
CU928165_184(CU928165|pid:none) Kluyveromyces thermotolerans str...    54   4e-06
AE017350_230(AE017350|pid:none) Cryptococcus neoformans var. neo...    54   5e-06
L41692_1(L41692|pid:none) Bos taurus (clone C14) retina-specific...    54   5e-06
AY548895_2(AY548895|pid:none) Antonospora locustae hypothetical ...    53   9e-06
AL590442_14(AL590442|pid:none) chromosome II of strain GB-M1 of ...    52   1e-05
CR382131_450(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    50   7e-05
AP007155_388(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    50   9e-05
BC055272_1(BC055272|pid:none) Danio rerio zgc:63485, mRNA (cDNA ...    50   9e-05
BC059200_1(BC059200|pid:none) Danio rerio zgc:66385, mRNA (cDNA ...    49   2e-04
CR382138_339(CR382138|pid:none) Debaryomyces hansenii strain CBS...    48   3e-04
AB099485_1(AB099485|pid:none) Mizuhopecten yessoensis canbp75 mR...    48   3e-04
EU441811_1(EU441811|pid:none) Xenopus borealis clone Ranbp1.a2 R...    48   4e-04
S54286(S54286)RanBP1 protein - human                                   48   4e-04
CR382122_250(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    47   5e-04
(Q9USL4) RecName: Full=Nucleoporin nup61; AltName: Full=Nuclear ...    47   6e-04
AM270181_6(AM270181|pid:none) Aspergillus niger contig An08c0260...    47   6e-04
AY140094_1(AY140094|pid:none) Arabidopsis thaliana unknown prote...    46   0.001
FM992689_500(FM992689|pid:none) Candida dubliniensis CD36 chromo...    46   0.001
AM158921_1(AM158921|pid:none) Xenopus laevis mRNA for ran bindin...    45   0.003
EF085180_1(EF085180|pid:none) Picea sitchensis clone WS0293_E15 ...    45   0.003
CP001331_109(CP001331|pid:none) Micromonas sp. RCC299 chromosome...    44   0.004
(Q09146) Brefeldin A resistance protein (Caffeine resistance pro...    44   0.004
AB027850_1(AB027850|pid:none) Schizosaccharomyces pombe gene for...    44   0.004
(Q5R4Y2) RecName: Full=Ran-binding protein 3;          Short=Ran...    44   0.007
FN392320_981(FN392320|pid:none) Pichia pastoris GS115 chromosome...    44   0.007
CU928171_757(CU928171|pid:none) Kluyveromyces thermotolerans str...    43   0.009
AE016815_245(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...    43   0.012
AK222990_1(AK222990|pid:none) Homo sapiens mRNA for RAN binding ...    43   0.012
(Q9CT10) RecName: Full=Ran-binding protein 3;          Short=Ran...    43   0.012
(Q4R4T9) RecName: Full=Ran-binding protein 3;          Short=Ran...    42   0.015
AL050149_1(AL050149|pid:none) Homo sapiens mRNA; cDNA DKFZp586I1...    42   0.015
Y08697_1(Y08697|pid:none) H.sapiens mRNA for RanBP3 small splice...    42   0.015
AK314343_1(AK314343|pid:none) Homo sapiens cDNA, FLJ95105, highl...    42   0.015
AB171271_1(AB171271|pid:none) Macaca fascicularis brain cDNA clo...    42   0.015
DQ234346_1(DQ234346|pid:none) Homo sapiens RAN binding protein 3...    42   0.015
Y08698_1(Y08698|pid:none) H.sapiens mRNA for RanBP3 (59 kDa).          42   0.015
AK299260_1(AK299260|pid:none) Homo sapiens cDNA FLJ55542 complet...    42   0.015
AK301942_1(AK301942|pid:none) Homo sapiens cDNA FLJ58549 complet...    42   0.015
AM438365_2(AM438365|pid:none) Vitis vinifera contig VV78X052512....    42   0.020
AK011541_1(AK011541|pid:none) Mus musculus 10 days embryo whole ...    40   0.057
EU692913_1(EU692913|pid:none) Caenorhabditis brenneri clone 4D2....    40   0.098
EU281143_10(EU281143|pid:none) Enterobius vermicularis mitochond...    39   0.22
AE014185_193(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.28
AE017341_199(AE017341|pid:none) Cryptococcus neoformans var. neo...    38   0.37
AB027958_1(AB027958|pid:none) Schizosaccharomyces pombe gene for...    37   0.83
AY648941_2(AY648941|pid:none) Vasdavidius concursus cytochrome o...    37   0.83
FJ456942_9(FJ456942|pid:none) Lycorma delicatula mitochondrion, ...    37   0.83
AC146573_3(AC146573|pid:none) Medicago truncatula clone mth2-145...    35   1.8
AY085429_1(AY085429|pid:none) Arabidopsis thaliana clone 151415 ...    35   1.8
AY057537_1(AY057537|pid:none) Arabidopsis thaliana AT4g11790/T5C...    35   1.8
(A9MJQ9) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    35   2.4
AL049500_22(AL049500|pid:none) Arabidopsis thaliana DNA chromoso...    35   2.4
AK129344_1(AK129344|pid:none) Mus musculus mRNA for mKIAA1387 pr...    34   4.1
(B5BIP5) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    34   5.4
CP000300_2273(CP000300|pid:none) Methanococcoides burtonii DSM 6...    34   5.4
T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele...    34   5.4
(B4SYE2) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    34   5.4
(A9MXB8) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    34   5.4
(B4TN42) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    34   5.4
AB037808_1(AB037808|pid:none) Homo sapiens mRNA for KIAA1387 pro...    34   5.4
(Q57HW9) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    34   5.4
CP000436_1171(CP000436|pid:none) Haemophilus somnus 129PT, compl...    34   5.4
AY521251_10(AY521251|pid:none) Aleurodicus dugesii mitochondrion...    34   5.4
AK037253_1(AK037253|pid:none) Mus musculus 6 days neonate skin c...    33   7.0
FJ411411_7(FJ411411|pid:none) Acyrthosiphon pisum strain 5A mito...    33   7.0
BC060855_1(BC060855|pid:none) Homo sapiens SMEK homolog 2, suppr...    33   7.0
BX000351_3(BX000351|pid:none) Mouse DNA sequence from clone RP23...    33   7.0
CU633895_291(CU633895|pid:none) Podospora anserina genomic DNA c...    33   7.0
(Q8BYY0) RecName: Full=Serine/threonine-protein phosphatase 4 re...    33   7.0
CP000964_5393(CP000964|pid:none) Klebsiella pneumoniae 342, comp...    33   7.0
BT050756_1(BT050756|pid:none) Medicago truncatula clone MTYF5_F6...    33   7.0
(Q5MIZ7) RecName: Full=Serine/threonine-protein phosphatase 4 re...    33   7.0
AE004439_841(AE004439|pid:none) Pasteurella multocida subsp. mul...    33   7.0
AJ535316_1(AJ535316|pid:none) Xenopus laevis mRNA for structural...    33   7.0
(A6TG45) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    33   7.0
AK041513_1(AK041513|pid:none) Mus musculus 3 days neonate thymus...    33   7.0
AM269894_60(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    33   9.1
FJ456942_8(FJ456942|pid:none) Lycorma delicatula mitochondrion, ...    33   9.1

>(Q54KD9) RecName: Full=Ran-specific GTPase-activating protein
           homolog; AltName: Full=Ran-binding protein 1;
           Short=RanBP1;
          Length = 194

 Score =  342 bits (877), Expect = 7e-93
 Identities = 167/167 (100%), Positives = 167/167 (100%)
 Frame = +1

Query: 115 SSFAPAAEIKEYAADVEPNVEYEATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQ 294
           SSFAPAAEIKEYAADVEPNVEYEATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQ
Sbjct: 28  SSFAPAAEIKEYAADVEPNVEYEATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQ 87

Query: 295 WKERGTGNVRFLEDKDSKRIRVVMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPK 474
           WKERGTGNVRFLEDKDSKRIRVVMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPK
Sbjct: 88  WKERGTGNVRFLEDKDSKRIRVVMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPK 147

Query: 475 DFSDEEKPEGVEELFAIRFATPENAGLFKTEFQKCQAKNEAIEKKTE 615
           DFSDEEKPEGVEELFAIRFATPENAGLFKTEFQKCQAKNEAIEKKTE
Sbjct: 148 DFSDEEKPEGVEELFAIRFATPENAGLFKTEFQKCQAKNEAIEKKTE 194

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 978,879,994
Number of extensions: 17925593
Number of successful extensions: 51169
Number of sequences better than 10.0: 169
Number of HSP's gapped: 50483
Number of HSP's successfully gapped: 200
Length of query: 242
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 117
Effective length of database: 652,629,681
Effective search space: 76357672677
Effective search space used: 76357672677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.14  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U04285-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0