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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04264-1
Contig ID Contig-U04264-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Contig-U04264-1Q.Seq.d
ATTTATTTATATTTATAAAATGACTACTCAACAAGAAACCTTGACGGATG
GCAACGCCTTGAAACAATTCGTAGTATTAGCCAGAATCCTCAAAAGGTAG
AGCAATTGTTTCAATCATTGAAAAAGCTTTAAATCATCCAAGTGTTTTTG
TATTTGGTGAATTATTAGATATGCCAAATGTTCAACAATTAAAAGAAACA
GAATTTAAAAATTATTATGATTTACTTTTAATCTTTGCATATGGATCTTT
TATTGATTACAAAAATAAAAAAGATAGTCTCCCACAATTGACTCCACAAA
TGATCACAAAGCTAAAACAACTCACTATTGTATTTTTATCATCAACTTCA
AATGTTATTCCATATTCAGTTTTACAAGAACAAATTGAAATTACTAATGT
TAGAGAATTAGAAGATTTAATTATAGATTCAATTTATCAAAACATTATCA
AAGGTAAATTAGATCAAAAGAATAAACATTTAGAAATCGATTTTTCAATT
GGTAGAGATGTTCAACCAGAACAATTGGATTCAATGATCAACTGTTTAAA
TAATTGGTCATCAACATCACAAAAGTTATTAGATGATATCAGTGGTTTAA
TCACTCACTCTGATAAAGTTCACCTTCAATATCGTAAGGAGAAAGAAGAG
TTTGAATCTAAATTTGAAATAGCAAAATTAAATACTAAAAATGATTCACC
AGCCGAACAATTATACTATGATTCAATGGAATACTCTGATGAAGTTNGAA
TGAAAAAAGGTCCAAAAATTAAGGGTAAAGATTATAACAAANGACCATAA
ATAAAAATAAAAATTTAATTTTAAAATGTCTTTTAAGTTTTTCCAATA
Gap no gap
Contig length 848
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 147933
End point 147085
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U04264
List of clone(s) 

est1=SSF418F,1,688
est2=SLJ685F,30,247
est3=SLJ685Z,629,849
Translated Amino Acid sequence 
lfifik*llnkkp*rmatp*nns*y*PESSKGRAIVSIIEKALNHPSVFVFGELLDMPNV
QQLKETEFKNYYDLLLIFAYGSFIDYKNKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIP
YSVLQEQIEITNVRELEDLIIDSIYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMIN
CLNNWSSTSQKLLDDISGLITHSDKVHLQYRKEKEEFESKFEIAKLNTKNDSPAEQLYYD
SMEYSDEVXMKKGPKIKGKDYNKXP*ikiki*f*nvf*vfpi
Translated Amino Acid sequence (All Frames) 
Frame A:
iylyl*ndystrnldgwqrletirsisqnpqkveqlfqslkkl*iiqvflylvny*icqm
fnn*kkqnlkiimiyf*slhmdlllitkikkivshn*lhk*sqs*nnsllyfyhqlqmlf
hiqfyknklkllmlen*ki*l*iqfiktlskvn*ikrini*ksifqlvemfnqnnwiq*s
tv*iighqhhksy*misvv*sltlikftfnivrrkkslnlnlk*qn*ilkmihqpnnytm
iqwntlmkxe*kkvqklrvkiitxdhk*k*kfnfkmsfkffq


Frame B:
fiyiykmttqqetltdgnalkqfvvlarilkr*sncfnh*ksfksskcfciw*iiryakc
stikrnri*kll*ftfnlciwify*lqk*kr*sptidstndhkaktthycifiinfkcys
ifsftrtn*ny*c*rirrfnyrfnlskhyqr*irske*tfrnrffnw*rcstrtigfndq
lfk*lvinitkvir*yqwfnhsl**sspsis*gerrv*i*i*nskiky*k*ftsrtiil*
fngil**sxnekrskn*g*rl*qxtinknknlilkcllsfsn


Frame C:
lfifik*llnkkp*rmatp*nns*y*PESSKGRAIVSIIEKALNHPSVFVFGELLDMPNV
QQLKETEFKNYYDLLLIFAYGSFIDYKNKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIP
YSVLQEQIEITNVRELEDLIIDSIYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMIN
CLNNWSSTSQKLLDDISGLITHSDKVHLQYRKEKEEFESKFEIAKLNTKNDSPAEQLYYD
SMEYSDEVXMKKGPKIKGKDYNKXP*ikiki*f*nvf*vfpi
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04264-1 (Contig-U04264-1Q)
/CSM_Contig/Contig-U04264-1Q.Seq.d
         (848 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Conti...  1411  0.0
Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12452-1 (Contig-U12452-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11446-1 (Contig-U11446-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12146-1 (Contig-U12146-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11424-1 (Contig-U11424-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U12593-1 (Contig-U12593-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti...    34  0.24

>Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Contig-U04264-1Q.Seq.d
          Length = 848

 Score = 1411 bits (712), Expect = 0.0
 Identities = 739/751 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttatttatatttataaaatgactactcaacaagaaaccttgacggatggcaacgcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttatttatatttataaaatgactactcaacaagaaaccttgacggatggcaacgcctt 60

                                                                       
Query: 61  gaaacaattcgtagtattagccagaatcctcaaaaggtagagcaattgtttcaatcattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaacaattcgtagtattagccagaatcctcaaaaggtagagcaattgtttcaatcattg 120

                                                                       
Query: 121 aaaaagctttaaatcatccaagtgtttttgtatttggtgaattattagatatgccaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaagctttaaatcatccaagtgtttttgtatttggtgaattattagatatgccaaatg 180

                                                                       
Query: 181 ttcaacaattaaaagaaacagaatttaaaaattattatgatttacttttaatctttgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcaacaattaaaagaaacagaatttaaaaattattatgatttacttttaatctttgcat 240

                                                                       
Query: 241 atggatcttttattgattacnnnnnnnnnnnngatagtctcccacaattgactccacaaa 300
           ||||||||||||||||||||            ||||||||||||||||||||||||||||
Sbjct: 241 atggatcttttattgattacaaaaataaaaaagatagtctcccacaattgactccacaaa 300

                                                                       
Query: 301 tgatcacaaagctaaaacaactcactattgtatttttatcatcaacttcaaatgttattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatcacaaagctaaaacaactcactattgtatttttatcatcaacttcaaatgttattc 360

                                                                       
Query: 361 catattcagttttacaagaacaaattgaaattactaatgttagagaattagaagatttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catattcagttttacaagaacaaattgaaattactaatgttagagaattagaagatttaa 420

                                                                       
Query: 421 ttatagattcaatttatcaaaacattatcaaaggtaaattagatcaaaagaataaacatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttatagattcaatttatcaaaacattatcaaaggtaaattagatcaaaagaataaacatt 480

                                                                       
Query: 481 tagaaatcgatttttcaattggtagagatgttcaaccagaacaattggattcaatgatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tagaaatcgatttttcaattggtagagatgttcaaccagaacaattggattcaatgatca 540

                                                                       
Query: 541 actgtttaaataattggtcatcaacatcacaaaagttattagatgatatcagtggtttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actgtttaaataattggtcatcaacatcacaaaagttattagatgatatcagtggtttaa 600

                                                                       
Query: 601 tcactcactctgataaagttcaccttcaatatcgtaaggagaaagaagagtttgaatcta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcactcactctgataaagttcaccttcaatatcgtaaggagaaagaagagtttgaatcta 660

                                                                       
Query: 661 aatttgaaatagcaaaattaaatactaaaaatgattcaccagccgaacaattatactatg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatttgaaatagcaaaattaaatactaaaaatgattcaccagccgaacaattatactatg 720

                                          
Query: 721 attcaatggaatactctgatgaagttngaat 751
           |||||||||||||||||||||||||||||||
Sbjct: 721 attcaatggaatactctgatgaagttngaat 751


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 828 gtcttttaagtttttccaata 848
           |||||||||||||||||||||
Sbjct: 828 gtcttttaagtttttccaata 848


>Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Contig-U14702-1Q.Seq.d
          Length = 547

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 aaaagaaacagaatttaaaaatta 214
           |||||||| |||||||||||||||
Sbjct: 377 aaaagaaaaagaatttaaaaatta 400


>Contig-U12452-1 (Contig-U12452-1Q) /CSM_Contig/Contig-U12452-1Q.Seq.d
          Length = 1317

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 677  attaaatactaaaaatgatt 696
            ||||||||||||||||||||
Sbjct: 1185 attaaatactaaaaatgatt 1204


 Score = 36.2 bits (18), Expect = 0.060
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 335 tttatcatcaacttcaaatgtt 356
           ||||||| ||||||||||||||
Sbjct: 597 tttatcaccaacttcaaatgtt 618


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,183
Number of Sequences: 6905
Number of extensions: 15183
Number of successful extensions: 1804
Number of sequences better than 10.0: 237
length of query: 848
length of database: 5,674,871
effective HSP length: 16
effective length of query: 832
effective length of database: 5,564,391
effective search space: 4629573312
effective search space used: 4629573312
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.14
Homology vs DNA 
Query= Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Contig-U04264-1Q.Seq.d
         (848 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(DQ309435) Dictyostelium discoideum COP9 signalosome complex...   946   0.0    3
(AU072922) Dictyostelium discoideum slug cDNA, clone SSF418.      311   e-123  2
(AU060422) Dictyostelium discoideum slug cDNA, clone SLJ685.      432   e-117  1
(AU053787) Dictyostelium discoideum slug cDNA, clone SLJ685.      240   7e-59  1
(EC824859) SME00007627 esmbsro2 Sawyeria marylandensis cDNA,...    60   6e-11  2
(EC825119) SME00008933 esmbsro2 Sawyeria marylandensis cDNA,...    60   6e-11  2
(FC799886) CBGC3260.fwd CBGC Lottia gigantea 15h 18h embryos...    54   9e-08  3
(FC648418) CAXW10095.fwd CAXW Lottia gigantea from female go...    54   1e-07  3
(FC726224) CBBG3362.rev CBBG Lottia gigantea 12,15,18h embry...    54   1e-07  3
(FC774905) CBBN8640.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    54   1e-07  3
(FC726225) CBBG3362.fwd CBBG Lottia gigantea 12,15,18h embry...    54   1e-07  3
(FC678126) CAXX12371.rev CAXX Lottia gigantea from male gona...    54   1e-04  2
(FC678127) CAXX12371.fwd CAXX Lottia gigantea from male gona...    54   1e-04  2
(FL499320) Mg_Nor01_12A10 Nor01 Mytilus galloprovincialis cD...    36   0.031  3
(CV178158) DYSDERA55PCR_B04_1_029 Dysdera erythrina cDNA Dys...    52   0.036  1
(AC231204) Lama pacos clone CH246-260A19, WORKING DRAFT SEQU...    34   0.084  2
(AC232471) Brassica rapa subsp. pekinensis clone KBrB026K21,...    36   0.087  7
(EE119313) G710P5224RD8.T0 Acorn worm normalized juvenile pE...    50   0.14   1
(EE119057) G710P5206RC10.T0 Acorn worm normalized juvenile p...    50   0.14   1
(EE118632) G709P570RC6.T0 Acorn worm normalized neurula pExp...    50   0.14   1
(EE118119) G709P5229RC11.T0 Acorn worm normalized neurula pE...    50   0.14   1
(EE118079) G709P5225RG1.T0 Acorn worm normalized neurula pEx...    50   0.14   1
(EE118058) G709P521RF10.T0 Acorn worm normalized neurula pEx...    50   0.14   1
(EE117721) G709P5175RG2.T0 Acorn worm normalized neurula pEx...    50   0.14   1
(EE117345) G709P5131RB12.T0 Acorn worm normalized neurula pE...    50   0.14   1
(EE117224) G709P5114RD2.T0 Acorn worm normalized neurula pEx...    50   0.14   1
(EE117158) G709P50RH4.T0 Acorn worm normalized neurula pExpr...    50   0.14   1
(EE117109) G708P596RE12.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(EE117078) G708P593RH12.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(EE116827) G708P551RF2.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(EE116792) G708P548RB6.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(EE116750) G708P53RB11.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(EE116639) G708P52RB12.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(EE116626) G708P528RF12.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(EE115984) G708P516RF4.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(EE115946) G708P5156RH9.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(EE115856) G708P514RE7.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(EE115497) G708P5108RA5.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(EE115236) G613P6338RG12.T0 Acorn worm blastula/gastrula pCM...    50   0.14   1
(EE114346) G613P6109RB5.T0 Acorn worm blastula/gastrula pCMV...    50   0.14   1
(EE113869) G613P6027RG10.T0 Acorn worm blastula/gastrula pCM...    50   0.14   1
(EE113618) G50P6285RG3.T0 Acorn worm gastrula/neurula pCMVSp...    50   0.14   1
(EE112775) G178P60137RG3.T0 Acorn worm gastrula/neurula pCMV...    50   0.14   1
(EE112444) G178P60072RG5.T0 Acorn worm gastrula/neurula pCMV...    50   0.14   1
(EE111362) G125P60024RE4.T0 Acorn worm blastula/gastrula pCM...    50   0.14   1
(FF676945) G826P576RA6.T0 Acorn worm normalized juvenile pEx...    50   0.14   1
(FF676944) G826P576FA6.T0 Acorn worm normalized juvenile pEx...    50   0.14   1
(FF674752) G826P561RC10.T0 Acorn worm normalized juvenile pE...    50   0.14   1
(FF659017) G826P528RH8.T0 Acorn worm normalized juvenile pEx...    50   0.14   1
(FF643420) G826P5126RC12.T0 Acorn worm normalized juvenile p...    50   0.14   1
(FF639946) G826P5103RH7.T0 Acorn worm normalized juvenile pE...    50   0.14   1
(FF639945) G826P5103FH7.T0 Acorn worm normalized juvenile pE...    50   0.14   1
(FF633378) G825P55RA8.T0 Acorn worm normalized gastrula pExp...    50   0.14   1
(FF632267) G825P552RF8.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(FF632266) G825P552FF8.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(FF630921) G825P544RH12.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF628888) G825P5358RG10.T0 Acorn worm normalized gastrula p...    50   0.14   1
(FF627779) G825P532RH6.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(FF627778) G825P532FH6.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(FF626750) G825P5323RC8.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF625816) G825P5318RB8.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF622042) G825P5246RF6.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF621757) G825P5244RG2.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF621373) G825P5242RB3.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF620872) G825P5239RE11.T0 Acorn worm normalized gastrula p...    50   0.14   1
(FF617626) G825P520RE11.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF617625) G825P520FE11.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF615549) G825P5187FE2.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF614259) G825P5179RD3.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF614258) G825P5179FD3.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF613852) G825P5176RD7.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF613630) G825P5174RG12.T0 Acorn worm normalized gastrula p...    50   0.14   1
(FF611424) G825P5160RA5.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF611423) G825P5160FA5.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF611014) G825P5158RD3.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF605293) G825P5120RF5.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF604510) G825P5115RH2.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF602238) G825P5100RH7.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(FF514022) G709P570FC6.T0 Acorn worm normalized neurula pExp...    50   0.14   1
(FF508763) G709P5229FC11.T0 Acorn worm normalized neurula pE...    50   0.14   1
(FF508216) G709P5225FG1.T0 Acorn worm normalized neurula pEx...    50   0.14   1
(FF499879) G709P50FH4.T0 Acorn worm normalized neurula pExpr...    50   0.14   1
(FF494836) G708P52FB12.T0 Acorn worm normalized gastrula pEx...    50   0.14   1
(FF494616) G708P528FF12.T0 Acorn worm normalized gastrula pE...    50   0.14   1
(BX248512) Zebrafish DNA sequence from clone CH211-284D12 in...    38   0.20   6
(AC140231) Mus musculus BAC clone RP24-493L15 from 6, comple...    40   0.26   7
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.29   9
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    40   0.35   7
(CU694439) Zebrafish DNA sequence from clone ZFOS-524D12.          48   0.39   3
(AC170260) Mus musculus BAC clone RP24-347N1 from chromosome...    38   0.49   5
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.54   16
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.54   19
(CR846093) Zebrafish DNA sequence from clone DKEY-88P16 in l...    48   0.55   1
(BX255962) Zebrafish DNA sequence from clone CH211-269C21 in...    48   0.55   1
(AM488921) Vitis vinifera contig VV78X151325.21, whole genom...    48   0.55   1
(AM475430) Vitis vinifera, whole genome shotgun sequence, co...    48   0.55   1
(EU643474) Adineta vaga clone Av240_B G-protein coupled rece...    48   0.55   1
(AC167752) Bos taurus clone CH240-214A7, WORKING DRAFT SEQUE...    48   0.55   1
(AC164189) Bos taurus clone CH240-151D2, *** SEQUENCING IN P...    48   0.55   1
(EK565877) 1095521040182 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.55   1
(FC594591) CAXP8660.fwd CAXP Lottia gigantea from head, foot...    48   0.55   1
(CP000932) Campylobacter lari RM2100, complete genome.             48   0.55   1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.66   11
(CU928412) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.72   7
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    40   0.73   17
(AC216596) Populus trichocarpa clone POP019-I06, complete se...    36   0.79   5
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    36   0.84   4
(AC183610) Pan troglodytes BAC clone CH251-223D9 from chromo...    36   0.85   6
(BV389705) S243P6189FF7.T0 CaliforniaCoyote Canis latrans ST...    44   1.2    2
(BQ596571) PfESToab19e12.y1 Plasmodium falciparum 3D7 asexua...    34   1.3    3
(FI062371) CHO_OF6651xk10f1.ab1 CHO_OF6 Nicotiana tabacum ge...    42   1.5    2
(FH216280) CHO_OF3337xe15r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   1.6    2
(CK758452) pam01-13ms3-h05 Pam01 Persea americana cDNA clone...    34   1.7    3
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   1.8    13
(AC123054) Mus musculus BAC clone RP24-220N11 from 5, comple...    38   1.9    4
(AM449776) Vitis vinifera contig VV78X212910.2, whole genome...    42   2.2    2
(AC149502) Xenopus (Silurana) tropicalis clone CH216-11H14, ...    46   2.2    1
(AC151628) Carollia perspicillata clone 544P19, WORKING DRAF...    46   2.2    1
(AC151438) Carollia perspicillata clone 438K12, WORKING DRAF...    46   2.2    1
(AC172176) Atelerix albiventris clone LB4-359O9, WORKING DRA...    46   2.2    1
(DE587863) Bombyx mori genomic DNA, Fosmid clone:GBMFno240_i...    46   2.2    1
(CW949538) TcB34.2_G12_SP6 Tribolium BAC library Tribolium c...    46   2.2    1
(CG754863) P050-2-G05.za Ppa EcoRI BAC Library Pristionchus ...    36   2.6    2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    36   2.6    13
(AC219341) Bos taurus clone CH240-337K23, WORKING DRAFT SEQU...    34   2.8    8
(AC216919) Populus trichocarpa clone POP078-E17, complete se...    38   3.0    6
(GE675523) CBTY633.b1 B.anynana_embryo_nosize Bicyclus anyna...    38   3.1    2
(AP007792) Lotus japonicus genomic DNA, chromosome 4, clone:...    36   3.1    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   3.1    13
(AC148452) Xenopus (Silurana) tropicalis clone CH216-144N4, ...    36   3.2    6
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   3.8    10
(AF033858) Pediococcus pentosaceus strain ATCC43200 plasmid ...    40   4.0    3
(AF069302) Pediococcus pentosaceus plasmid pMD136, complete ...    40   4.0    3
(AC133031) Rattus norvegicus clone CH230-283A9, *** SEQUENCI...    34   4.0    2
(AC137038) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    34   4.1    2
(AC137039) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    34   4.1    2
(AC220340) Bos taurus clone CH240-361C11, WORKING DRAFT SEQU...    32   4.2    2
(AC224877) Bos taurus clone CH240-473J2, WORKING DRAFT SEQUE...    32   4.2    2
(CP001320) Borrelia garinii Far04 plasmid Far04_lp32-10, com...    36   4.3    3
(GC740394) Sequence 55639 from patent US 6812339.                  38   4.4    2
(AC166440) Bos taurus clone CH240-179E16, WORKING DRAFT SEQU...    40   4.5    4
(FK933492) EST_lsal_evj_940665 lsalevj mixed_tissue_mixed_st...    40   4.6    2
(FK933491) EST_lsal_evj_954489 lsalevj mixed_tissue_mixed_st...    40   4.6    2
(AC213152) Populus trichocarpa clone POP016-F22, complete se...    32   4.6    7
(ET091286) QM0AAA16CF01RM1 CCL1 Citrus clementina genomic cl...    38   4.7    2
(AC120949) Rattus norvegicus clone CH230-464D6, *** SEQUENCI...    38   5.0    5
(GE726817) CBUH6153.g1 B.anynana_wing.LCPP_2-10kb Bicyclus a...    38   5.2    2
(GE737471) CBUG5644.b1 B.anynana_wing.LCPP_nosize Bicyclus a...    38   5.3    2
(GE726816) CBUH6153.b1 B.anynana_wing.LCPP_2-10kb Bicyclus a...    38   5.3    2
(EJ342396) 1092963525163 Global-Ocean-Sampling_GS-28-01-01-1...    42   5.4    2
(GD201810) G1045P3111RN20.T1 Aplysia californica Pooled Norm...    32   5.6    2
(CU468223) S.lycopersicum DNA sequence from clone LE_HBa-111...    38   5.8    6
(AC181167) Strongylocentrotus purpuratus clone R3-15N15, WOR...    44   5.8    6
(AP010250) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   5.9    4
(AC167130) Mus musculus chromosome 1 clone RP23-144G14 map 1...    40   5.9    5
(FI282548) AdH1149-CPY2-K5TR AdH1 Arachis duranensis genomic...    32   6.0    3
(AC209002) Populus trichocarpa clone POP040-E22, complete se...    40   6.0    6
(FI239828) CccaBb016-D17JF CccABb Cajanus cajan genomic clon...    38   6.1    2
(EJ885911) 1093018417745 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.2    2
(CT543676) A BAC library has been constructed from cultivar ...    38   6.4    2
(CP001179) Bacillus cereus AH187 plasmid pAH187_270, complet...    36   6.4    8
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   6.6    9
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    34   6.6    18
(AC224041) Bos taurus clone CH240-451K22, WORKING DRAFT SEQU...    34   6.7    7
(AL844509) Plasmodium falciparum chromosome 13.                    36   7.8    11
(BS000655) Pan troglodytes chromosome Y clone:PTB-215M20, co...    36   8.0    8
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    36   8.1    7
(BX842691) Zebrafish DNA sequence from clone DKEY-239I20 in ...    44   8.7    1
(BX255937) Zebrafish DNA sequence from clone CH211-191D7 in ...    44   8.7    1
(AL935055) Mouse DNA sequence from clone RP23-131J21 on chro...    44   8.7    1
(AC166798) Mus musculus chromosome 3, clone RP23-442J19, com...    44   8.7    1
(AC121783) Mus musculus BAC clone RP23-370I9 from 18, comple...    44   8.7    1
(AC112926) Mus musculus chromosome 3, clone RP23-215M7, comp...    44   8.7    1
(EF676913) Picea sitchensis clone WS02757_M17 unknown mRNA.        44   8.7    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.7    1
(AP003888) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.7    1
(AP003857) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.7    1
(AM483017) Vitis vinifera contig VV78X197097.16, whole genom...    44   8.7    1
(AM466970) Vitis vinifera, whole genome shotgun sequence, co...    44   8.7    1
(AM448745) Vitis vinifera contig VV78X193570.10, whole genom...    44   8.7    1
(AM447520) Vitis vinifera contig VV78X151640.4, whole genome...    44   8.7    1
(AM437599) Vitis vinifera contig VV78X178605.2, whole genome...    44   8.7    1
(AM428209) Vitis vinifera contig VV78X180991.10, whole genom...    44   8.7    1
(AM424810) Vitis vinifera contig VV78X002935.9, whole genome...    44   8.7    1
(FB605810) Sequence 21533 from Patent WO2004081186.                44   8.7    1
(FB605807) Sequence 21530 from Patent WO2004081186.                44   8.7    1
(FB605782) Sequence 21505 from Patent WO2004081186.                44   8.7    1
(FB596507) Sequence 12230 from Patent WO2004081186.                44   8.7    1
(EA720867) Sequence 99746 from patent US 7365185.                  44   8.7    1
(EA700819) Sequence 79698 from patent US 7365185.                  44   8.7    1
(AX323614) Sequence 102 from Patent WO0192565.                     44   8.7    1
(GM995962) Sequence 102 from Patent EP2014776.                     44   8.7    1
(AC187295) Canis Familiaris chromosome 33, clone XX-84F14, c...    44   8.7    1
(AY940097) Homo sapiens X-ray repair complementing defective...    44   8.7    1
(AP000789) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    44   8.7    1
(AL117353) Human DNA sequence from clone RP5-944F13 on chrom...    44   8.7    1
(AF248244) Homo sapiens neuroserpin (PI12) gene, exons 2 thr...    44   8.7    1
(AC096534) Homo sapiens chromosome 1 clone RP11-32I17, compl...    44   8.7    1
(AC079822) Homo sapiens 3 BAC RP11-413G22 (Roswell Park Canc...    44   8.7    1
(AC064874) Homo sapiens BAC clone RP11-680O16 from 2, comple...    44   8.7    1
(AC034211) Homo sapiens chromosome 5 clone CTC-556K20, compl...    44   8.7    1
(AC026458) Homo sapiens chromosome 16 clone RP11-10K17, comp...    44   8.7    1
(AC025439) Homo sapiens chromosome 5 clone CTC-480E9, comple...    44   8.7    1
(AC023134) Homo sapiens chromosome 5 clone RP11-463C5, compl...    44   8.7    1
(AC007011) Homo sapiens chromosome 16 clone 165E7, complete ...    44   8.7    1
(AC157454) Monodelphis domestica clone VMRC6-101N7, WORKING ...    44   8.7    1
(AC155145) Bos taurus clone CH240-35G20, WORKING DRAFT SEQUE...    44   8.7    1
(AC133695) Rattus norvegicus clone CH230-24J9, *** SEQUENCIN...    44   8.7    1
(AC119753) Mus musculus chromosome 2 clone RP23-100N22 map 2...    44   8.7    1
(AC111845) Rattus norvegicus clone CH230-277G24, *** SEQUENC...    44   8.7    1
(FP236229) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(FP089498) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU929569) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU856463) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU694829) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU633409) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(AC026025) Homo sapiens chromosome 1 clone CTD-2010E4, WORKI...    44   8.7    1
(CU466436) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU041274) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CR940353) Theileria annulata genomic DNA chromosome 4.            44   8.7    1
(CR384110) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.7    1
(AP001144) Homo sapiens genomic DNA, chromosome 11q22 clone:...    44   8.7    1
(AL390054) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.7    1
(AC230842) Bos taurus clone CH240-497I18, WORKING DRAFT SEQU...    44   8.7    1
(AC230840) Bos taurus clone CH240-497H6, WORKING DRAFT SEQUE...    44   8.7    1
(AC224103) Bos taurus clone CH240-450A9, WORKING DRAFT SEQUE...    44   8.7    1
(AC221417) Bos taurus clone CH240-406K21, WORKING DRAFT SEQU...    44   8.7    1
(AC215737) Cavia porcellus clone CH234-153D16, WORKING DRAFT...    44   8.7    1
(AC198907) Macaca mulatta clone CH250-179D14, WORKING DRAFT ...    44   8.7    1
(AC188225) Callithrix jacchus clone CH259-229J10, WORKING DR...    44   8.7    1
(AC183461) Atelerix albiventris clone LB4-516K21, WORKING DR...    44   8.7    1
(AC181755) Strongylocentrotus purpuratus clone R3-1036L20, W...    44   8.7    1
(AC180459) Strongylocentrotus purpuratus clone R3-3102B24, W...    44   8.7    1
(AC176233) Strongylocentrotus purpuratus clone R3-3005E14, W...    44   8.7    1
(AC172974) Bos taurus clone CH240-269C13, WORKING DRAFT SEQU...    44   8.7    1
(AC169692) Bos taurus clone CH240-207H18, WORKING DRAFT SEQU...    44   8.7    1
(AC169672) Erinaceus europaeus clone XX-29481257F24, *** SEQ...    44   8.7    1
(AC168113) Bos taurus clone CH240-159P13, WORKING DRAFT SEQU...    44   8.7    1
(AC166647) Mus musculus chromosome 3 clone RP23-5I9 map 3, *...    44   8.7    1
(AC024891) Homo sapiens chromosome 3 clone RP11-297J9, WORKI...    44   8.7    1
(EF092066) Maconellicoccus hirsutus clone WHMH4173 ubiquitin...    44   8.7    1
(AZ546063) ENTEI46TR Entamoeba histolytica Sheared DNA Entam...    44   8.7    1
(AZ545843) ENTDE05TF Entamoeba histolytica Sheared DNA Entam...    44   8.7    1
(AZ534409) ENTCA68TR Entamoeba histolytica Sheared DNA Entam...    44   8.7    1
(AZ533199) ENTCI65TF Entamoeba histolytica Sheared DNA Entam...    44   8.7    1
(ET975214) CHO_OF685xa07f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.7    1
(ER864603) POTLP33TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.7    1
(EK136329) 1095403609658 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.7    1
(EJ916421) 1093018562486 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.7    1
(EJ817332) 1093017521754 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.7    1
(EI788540) CHORI518014A10TF BAC library from the breast cell...    44   8.7    1
(EI756481) CHORI520R14O07TF BAC library from the breast cell...    44   8.7    1
(EI379358) POTC184TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.7    1
(DX527623) GH_MBb0052F13f GH_MBb Gossypium hirsutum genomic ...    44   8.7    1
(DU939415) 371560 Tomato EcoRI BAC Library Solanum lycopersi...    44   8.7    1
(CZ969765) 169987 Tomato MboI BAC Library Solanum lycopersic...    44   8.7    1
(CZ194986) AIAA-aac69b16.b1 Ancylostoma caninum whole genome...    44   8.7    1
(AG901323) Oryza sativa Indica Group genomic DNA, BAC end se...    44   8.7    1
(CL582711) OB__Ba0048E08.r OB__Ba Oryza brachyantha genomic ...    44   8.7    1
(CL556407) OB__Ba0007J17.r OB__Ba Oryza brachyantha genomic ...    44   8.7    1
(CL089132) ISB1-12D1_T7.1 ISB1 Xenopus (Silurana) tropicalis...    44   8.7    1
(EH697338) CCIM9155.b1_F10.ab1 CCI(LMS) chicory Cichorium in...    44   8.7    1
(EH212075) USDA-FP_174865 WHMH (pink hibiscus mealybug) Maco...    44   8.7    1
(DR590818) WS00829.B21_K05 WS-X-N-A-9 Picea glauca cDNA clon...    44   8.7    1
(DR542448) WS01038.B21_L21 SS-R-N-A-11 Picea sitchensis cDNA...    44   8.7    1
(DR498916) WS02917.C21_B13 SS-IB-A-FL-15 Picea sitchensis cD...    44   8.7    1
(DR491281) WS02917.CR_B13 SS-IB-A-FL-15 Picea sitchensis cDN...    44   8.7    1
(DR181861) RTMNUT1_41_A12.g1_A029 Roots minus micronutrients...    44   8.7    1
(CX092836) EHAFC55TR E. histolytica Normalized cDNA library ...    44   8.7    1
(CX086950) EHACS40TR E. histolytica Normalized cDNA library ...    44   8.7    1
(CX080868) EHAAA29TF E. histolytica Normalized cDNA library ...    44   8.7    1
(CU601523) Theobroma cacao, mRNA sequence (KZ0AAG6YJ23FM1).        44   8.7    1
(CO223009) WS01017.B21.1_L15 SS-R-N-A-11 Picea sitchensis cD...    44   8.7    1
(CO220061) WS0108.B21_K11 SS-R-N-A-11 Picea sitchensis cDNA ...    44   8.7    1
(CO217834) WS0101.B21_G23 SS-R-N-A-11 Picea sitchensis cDNA ...    44   8.7    1
(CO211732) WS00923.B21_A04 IS-B-N-A-10 Picea engelmannii x P...    44   8.7    1
(CO209946) WS00916.B21.1_K01 IS-B-N-A-10 Picea engelmannii x...    44   8.7    1
(CK240741) rx12g11.y1 Meloidogyne paranaensis egg SMART pGEM...    44   8.7    1
(CD239356) FNPBNF02 FNP Homo sapiens cDNA, mRNA sequence.          44   8.7    1
(BB182637) Mus musculus adult male hypothalamus cDNA, RIKEN ...    44   8.7    1
(FM026234) Dicentrarchus labrax EST, clone cDN34P0001P12, 5'...    44   8.7    1
(FG614857) FEGLCD006_05-C08-T7 PR_FC library Pinus rigida x ...    44   8.7    1
(FG614854) FEGLCD006_05-C05-T7 PR_FC library Pinus rigida x ...    44   8.7    1
(EY413718) pOP-EO04117_EST_C_1_pSK_SK EO (Oil Palm Embryoid)...    44   8.7    1
(EY410017) pOP-EO03980_EST_C_1_pSK_SK EO (Oil Palm Embryoid)...    44   8.7    1
(EY338209) CAWY8865.fwd CAWY Helobdella robusta Subtracted E...    44   8.7    1
(EX381048) GQ03302.SP6_J12 GQ033 - Terminal leader (Normaliz...    44   8.7    1
(EX333295) GQ02905.SP6_G08 GQ029 - Xylem scrapings - AT NITE...    44   8.7    1
(EX316842) GQ02810.SP6_J21 GQ028 - Cambium / phloem scrappin...    44   8.7    1
(EX316488) GQ02810.B7_J21 GQ028 - Cambium / phloem scrapping...    44   8.7    1
(ES853085) WS02757.CR_M17 SS-IL-A-FL-14 Picea sitchensis cDN...    44   8.7    1
(CP000931) Shewanella halifaxensis HAW-EB4, complete genome.       44   8.7    1
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   9.2    8
(X95275) Plasmodium falciparum complete gene map of plastid-...    40   9.3    3

>(DQ309435) Dictyostelium discoideum COP9 signalosome complex
           subunit 7 (csn7) mRNA, complete cds.
          Length = 780

 Score =  946 bits (477), Expect(3) = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Plus


Query: 273 gatagtctcccacaattgactccacaaatgatcacaaagctaaaacaactcactattgta 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatagtctcccacaattgactccacaaatgatcacaaagctaaaacaactcactattgta 312


Query: 333 tttttatcatcaacttcaaatgttattccatattcagttttacaagaacaaattgaaatt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttttatcatcaacttcaaatgttattccatattcagttttacaagaacaaattgaaatt 372


Query: 393 actaatgttagagaattagaagatttaattatagattcaatttatcaaaacattatcaaa 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 actaatgttagagaattagaagatttaattatagattcaatttatcaaaacattatcaaa 432


Query: 453 ggtaaattagatcaaaagaataaacatttagaaatcgatttttcaattggtagagatgtt 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggtaaattagatcaaaagaataaacatttagaaatcgatttttcaattggtagagatgtt 492


Query: 513 caaccagaacaattggattcaatgatcaactgtttaaataattggtcatcaacatcacaa 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaccagaacaattggattcaatgatcaactgtttaaataattggtcatcaacatcacaa 552


Query: 573 aagttattagatgatatcagtggtttaatcactcactctgataaagttcaccttcaatat 632
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagttattagatgatatcagtggtttaatcactcactctgataaagttcaccttcaatat 612


Query: 633 cgtaaggagaaagaagagtttgaatctaaatttgaaatagcaaaattaaatactaaaaat 692
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cgtaaggagaaagaagagtttgaatctaaatttgaaatagcaaaattaaatactaaaaat 672


Query: 693 gattcaccagccgaacaattatactatgattcaatggaatactctgatgaagttngaatg 752
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 673 gattcaccagccgaacaattatactatgattcaatggaatactctgatgaagttagaatg 732

 Score =  349 bits (176), Expect(3) = 0.0
 Identities = 176/176 (100%)
 Strand = Plus / Plus


Query: 85  aatcctcaaaaggtagagcaattgtttcaatcattgaaaaagctttaaatcatccaagtg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aatcctcaaaaggtagagcaattgtttcaatcattgaaaaagctttaaatcatccaagtg 124


Query: 145 tttttgtatttggtgaattattagatatgccaaatgttcaacaattaaaagaaacagaat 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tttttgtatttggtgaattattagatatgccaaatgttcaacaattaaaagaaacagaat 184


Query: 205 ttaaaaattattatgatttacttttaatctttgcatatggatcttttattgattac 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttaaaaattattatgatttacttttaatctttgcatatggatcttttattgattac 240

 Score =  127 bits (64), Expect(3) = 0.0
 Identities = 64/64 (100%)
 Strand = Plus / Plus


Query: 20 atgactactcaacaagaaaccttgacggatggcaacgccttgaaacaattcgtagtatta 79
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgactactcaacaagaaaccttgacggatggcaacgccttgaaacaattcgtagtatta 60


Query: 80 gcca 83
          ||||
Sbjct: 61 gcca 64

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,073,556,586
Number of extensions: 72993172
Number of successful extensions: 6305083
Number of sequences better than 10.0: 297
Length of query: 848
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 824
Effective length of database: 99,340,224,878
Effective search space: 81856345299472
Effective search space used: 81856345299472
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Contig-U04264-1Q.Seq.d
         (848 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BD5) RecName: Full=COP9 signalosome complex subunit 7;      ...   440   e-129
AJ720533_1(AJ720533|pid:none) Gallus gallus mRNA for hypothetica...   162   2e-38
AM448435_1(AM448435|pid:none) Vitis vinifera contig VV78X199971....   161   3e-38
BC093015_1(BC093015|pid:none) Homo sapiens COP9 constitutive pho...   160   5e-38
AF193844_1(AF193844|pid:none) Homo sapiens COP9 complex subunit ...   160   5e-38
(Q9CZ04) RecName: Full=COP9 signalosome complex subunit 7a;     ...   160   5e-38
AK001318_1(AK001318|pid:none) Homo sapiens cDNA FLJ10456 fis, cl...   160   5e-38
(Q5R762) RecName: Full=COP9 signalosome complex subunit 7a;     ...   160   5e-38
AK019122_1(AK019122|pid:none) Mus musculus ES cells cDNA, RIKEN ...   159   1e-37
AK013155_1(AK013155|pid:none) Mus musculus 10, 11 days embryo wh...   159   1e-37
BC153238_1(BC153238|pid:none) Bos taurus COP9 constitutive photo...   158   2e-37
BT047127_1(BT047127|pid:none) Salmo salar clone ssal-rgb2-504-16...   158   2e-37
(Q9H9Q2) RecName: Full=COP9 signalosome complex subunit 7b;     ...   157   5e-37
BC091493_1(BC091493|pid:none) Homo sapiens COP9 constitutive pho...   157   5e-37
BC059697_1(BC059697|pid:none) Danio rerio COP9 constitutive phot...   157   5e-37
(Q2KI56) RecName: Full=COP9 signalosome complex subunit 7b;     ...   157   5e-37
BC012659_1(BC012659|pid:none) Mus musculus COP9 (constitutive ph...   157   5e-37
(Q8BV13) RecName: Full=COP9 signalosome complex subunit 7b;     ...   156   7e-37
FJ502068_1(FJ502068|pid:none) Aristichthys nobilis clone A146 Co...   156   9e-37
AK170140_1(AK170140|pid:none) Mus musculus NOD-derived CD11c +ve...   155   1e-36
EU969436_1(EU969436|pid:none) Zea mays clone 330210 COP9 signalo...   154   4e-36
AF071317_1(AF071317|pid:none) Mus musculus COP9 complex subunit ...   153   6e-36
AP004051_2(AP004051|pid:none) Oryza sativa Japonica Group genomi...   152   2e-35
BT033449_1(BT033449|pid:none) Zea mays full-length cDNA clone ZM...   149   1e-34
DQ440395_1(DQ440395|pid:none) Aedes aegypti clone AET-529 COP9 s...   146   1e-33
BT076863_1(BT076863|pid:none) Caligus rogercresseyi clone crog-e...   140   5e-32
BT012433_1(BT012433|pid:none) Drosophila melanogaster RH63621 fu...   139   9e-32
AE017349_315(AE017349|pid:none) Cryptococcus neoformans var. neo...   134   4e-30
BT052249_1(BT052249|pid:none) Medicago truncatula clone MTYF9_FA...   133   7e-30
AK342420_1(AK342420|pid:none) Acyrthosiphon pisum ACYPI001319 mR...   132   1e-29
AK010726_1(AK010726|pid:none) Mus musculus ES cells cDNA, RIKEN ...   129   1e-28
CP001327_302(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   128   2e-28
AM269976_24(AM269976|pid:none) Aspergillus niger contig An01c029...    98   4e-19
AP007150_279(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    92   2e-17
AK098334_1(AK098334|pid:none) Homo sapiens cDNA FLJ41015 fis, cl...    87   9e-16
AB060239_1(AB060239|pid:none) Macaca fascicularis brain cDNA clo...    84   5e-15
CP000593_140(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...    70   7e-11
CR954213_155(CR954213|pid:none) Ostreococcus tauri strain OTTH05...    67   1e-09
AX972362_1(AX972362|pid:none) Sequence 3165 from Patent EP1104808.     66   2e-09
AF277183_1(AF277183|pid:none) Homo sapiens PNAS-125 mRNA, comple...    63   1e-08
(Q5ZJ64) RecName: Full=Eukaryotic translation initiation factor ...    63   1e-08
(Q7L2H7) RecName: Full=Eukaryotic translation initiation factor ...    62   2e-08
(Q99JX4) RecName: Full=Eukaryotic translation initiation factor ...    62   2e-08
AL606494_8(AL606494|pid:none) Mouse DNA sequence from clone RP23...    62   2e-08
AK304378_1(AK304378|pid:none) Homo sapiens cDNA FLJ54904 complet...    62   2e-08
(Q5R8C4) RecName: Full=Eukaryotic translation initiation factor ...    62   2e-08
AK222564_1(AK222564|pid:none) Homo sapiens mRNA for dendritic ce...    62   2e-08
AF064603_1(AF064603|pid:none) Homo sapiens GA17 protein mRNA, co...    59   3e-07
(Q7ZYU8) RecName: Full=Eukaryotic translation initiation factor ...    58   5e-07
AY398350_1(AY398350|pid:none) Danio rerio clone RK111A2F06 dendr...    56   2e-06
(Q54KZ8) RecName: Full=Eukaryotic translation initiation factor ...    54   5e-06
FB863365_1(FB863365|pid:none) Sequence 82638 from Patent WO20080...    54   9e-06
AL133154_4(AL133154|pid:none) S.pombe chromosome I cosmid c1751....    53   1e-05
(Q0UXJ7) RecName: Full=Eukaryotic translation initiation factor ...    53   1e-05
DQ226994_1(DQ226994|pid:none) Nicotiana benthamiana RPN9 mRNA, p...    52   2e-05
AK117761_1(AK117761|pid:none) Arabidopsis thaliana At4g19006 mRN...    52   2e-05
CR940353_261(CR940353|pid:none) Theileria annulata strain Ankara...    50   7e-05
BT048555_1(BT048555|pid:none) Salmo salar clone ssal-rgb2-643-26...    50   7e-05
BT043761_1(BT043761|pid:none) Salmo salar clone HM6_1089 eukaryo...    50   1e-04
(Q7Q068) RecName: Full=Eukaryotic translation initiation factor ...    50   1e-04
FN357353_17(FN357353|pid:none) Schistosoma mansoni genome sequen...    49   2e-04
BT073009_1(BT073009|pid:none) Oncorhynchus mykiss clone omyk-evn...    49   3e-04
(A7SPX9) RecName: Full=Eukaryotic translation initiation factor ...    49   3e-04
AM910987_226(AM910987|pid:none) Plasmodium knowlesi strain H chr...    47   8e-04
AE017342_502(AE017342|pid:none) Cryptococcus neoformans var. neo...    47   0.001
AE014297_3507(AE014297|pid:none) Drosophila melanogaster chromos...    47   0.001
(B0WTN3) RecName: Full=Eukaryotic translation initiation factor ...    46   0.002
(A8WQY8) RecName: Full=COP9/Signalosome and eIF3 complex-shared ...    45   0.002
EF678701_1(EF678701|pid:none) Picea sitchensis clone WS0294_G09 ...    45   0.002
(Q5DHT6) RecName: Full=Eukaryotic translation initiation factor ...    45   0.002
AP007155_340(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    45   0.003
BT043856_1(BT043856|pid:none) Salmo salar clone HM4_2965 proteas...    45   0.003
CR382131_302(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.004
(Q4PEV8) RecName: Full=Eukaryotic translation initiation factor ...    45   0.004
BX088700_67(BX088700|pid:none) DNA centromeric region sequence f...    44   0.005
(Q5B5C1) RecName: Full=Eukaryotic translation initiation factor ...    44   0.005
(B0YCA6) RecName: Full=Eukaryotic translation initiation factor ...    44   0.005
BC049415_1(BC049415|pid:none) Danio rerio proteasome (prosome, m...    44   0.007
FJ915071_1(FJ915071|pid:none) Danio rerio proteasome 26S non-ATP...    44   0.007
BT076810_1(BT076810|pid:none) Caligus rogercresseyi clone crog-e...    44   0.007
(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subu...    43   0.012
(Q0CPV5) RecName: Full=Eukaryotic translation initiation factor ...    43   0.012
BT082719_1(BT082719|pid:none) Anoplopoma fimbria clone afim-evh-...    43   0.012
AJ575131_1(AJ575131|pid:none) Aspergillus niger rpnI gene for pu...    43   0.015
(Q2UDZ9) RecName: Full=Eukaryotic translation initiation factor ...    42   0.020
AM270296_1(AM270296|pid:none) Aspergillus niger contig An13c0020...    42   0.020
CU928175_156(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    42   0.026
CP000962_1183(CP000962|pid:none) Clostridium botulinum A3 str. L...    42   0.034
FN392320_1029(FN392320|pid:none) Pichia pastoris GS115 chromosom...    42   0.034
CP001083_1102(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    40   0.075
(A1CD85) RecName: Full=Eukaryotic translation initiation factor ...    40   0.075
CP001581_1180(CP001581|pid:none) Clostridium botulinum A2 str. K...    40   0.075
CP000728_1113(CP000728|pid:none) Clostridium botulinum F str. La...    40   0.098
AM920437_149(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    40   0.098
(Q94899) RecName: Full=COP9 signalosome complex subunit 2;      ...    40   0.13
AY118505_1(AY118505|pid:none) Drosophila melanogaster LD10463 fu...    40   0.13
AY223111_1(AY223111|pid:none) Schistosoma japonicum clone ZZD137...    38   0.37
AY811806_1(AY811806|pid:none) Schistosoma japonicum SJCHGC06237 ...    38   0.37
CP000312_424(CP000312|pid:none) Clostridium perfringens SM101, c...    38   0.37
BC108778_1(BC108778|pid:none) Xenopus laevis hypothetical protei...    38   0.49
AM920436_488(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    38   0.49
AK222590_1(AK222590|pid:none) Homo sapiens mRNA for COP9 constit...    37   0.64
AB169606_1(AB169606|pid:none) Macaca fascicularis brain cDNA, cl...    37   0.64
AJ720904_1(AJ720904|pid:none) Gallus gallus mRNA for hypothetica...    37   0.64
(P61201) RecName: Full=COP9 signalosome complex subunit 2;      ...    37   0.64
AK010383_1(AK010383|pid:none) Mus musculus ES cells cDNA, RIKEN ...    37   0.64
AB209799_1(AB209799|pid:none) Homo sapiens mRNA for COP9 constit...    37   0.64
AF071312_1(AF071312|pid:none) Mus musculus COP9 complex subunit ...    37   0.64
BA000016_454(BA000016|pid:none) Clostridium perfringens str. 13 ...    37   0.83
CP000879_1333(CP000879|pid:none) Petrotoga mobilis SJ95, complet...    37   0.83
(P68395) RecName: Full=COP9 signalosome complex subunit 7;      ...    37   1.1
AK146153_1(AK146153|pid:none) Mus musculus cDNA, RIKEN full-leng...    37   1.1
CP000246_438(CP000246|pid:none) Clostridium perfringens ATCC 131...    37   1.1
BC114035_1(BC114035|pid:none) Bos taurus COP9 constitutive photo...    36   1.4
CP000496_120(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    36   1.8
AK302685_1(AK302685|pid:none) Homo sapiens cDNA FLJ51156 complet...    36   1.8
(Q9US13) RecName: Full=Probable 26S proteasome regulatory subuni...    35   3.2
FN392319_377(FN392319|pid:none) Pichia pastoris GS115 chromosome...    35   4.1
CP000395_539(CP000395|pid:none) Borrelia afzelii PKo, complete g...    35   4.1
AP010872_608(AP010872|pid:none) Candidatus Ishikawaella capsulat...    34   5.4
AE014185_364(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.4
CP001616_2191(CP001616|pid:none) Tolumonas auensis DSM 9187, com...    34   5.4
FN392320_1206(FN392320|pid:none) Pichia pastoris GS115 chromosom...    34   7.0
(A5ISM9) RecName: Full=Nuclease sbcCD subunit C;  &(A6U1G7) RecN...    34   7.0
CP000867_1808(CP000867|pid:none) Methanococcus maripaludis C6, c...    33   9.2
CP000609_829(CP000609|pid:none) Methanococcus maripaludis C5, co...    33   9.2

>(Q55BD5) RecName: Full=COP9 signalosome complex subunit 7;
           Short=Signalosome subunit 7;
           &DQ309435_1(DQ309435|pid:none)
          Length = 259

 Score =  440 bits (1132), Expect(2) = e-129
 Identities = 224/238 (94%), Positives = 225/238 (94%)
 Frame = +3

Query: 84  ESSKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLIFAYGSFIDYK 263
           +SSKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLIFAYGSFIDYK
Sbjct: 22  KSSKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLIFAYGSFIDYK 81

Query: 264 NKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDLIIDSIYQN 443
           NKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDLIIDSIYQN
Sbjct: 82  NKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDLIIDSIYQN 141

Query: 444 IIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDISGLITHSDKVH 623
           IIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDISGLITHSDKVH
Sbjct: 142 IIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDISGLITHSDKVH 201

Query: 624 LQYRXXXXXXXXXXXIAKLNTKNDSPAEQLYYDSMEYSDEVXMKKGPKIKGKDYNKXP 797
           LQYR           IAKLNTKNDSPAEQLYYDSMEYSDEV MKKGPKIKGKDYNK P
Sbjct: 202 LQYRKEKEEFESKFEIAKLNTKNDSPAEQLYYDSMEYSDEVRMKKGPKIKGKDYNKRP 259

 Score = 45.1 bits (105), Expect(2) = e-129
 Identities = 22/25 (88%), Positives = 23/25 (92%)
 Frame = +2

Query: 20 MTTQQETLTDGNALKQFVVLARILK 94
          MTTQQETLTDGNALKQFVVLA+  K
Sbjct: 1  MTTQQETLTDGNALKQFVVLAKSSK 25

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,183,312,696
Number of extensions: 20839617
Number of successful extensions: 58986
Number of sequences better than 10.0: 126
Number of HSP's gapped: 58925
Number of HSP's successfully gapped: 127
Length of query: 282
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 155
Effective length of database: 646,092,785
Effective search space: 100144381675
Effective search space used: 100144381675
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.72  gvh: 0.41  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04264-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0