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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04232-1
Contig ID Contig-U04232-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Contig-U04232-1Q.Seq.d
AAAAAATAAAAAAAAAAAAAAAAAAAAGTATATTGAGAAAAAAAAAAAAA
AAAAAAAACAACCCACACATAAATTATTTATATTTTATTAGATACATACA
AATAAATATTTTATAAAAAAAAAAAAAAAAAAAAAATTGAAAATATTTTT
AATTTTGATATTTTTAATATTATCATTTTCCATAGTTTTAATTAATGGTG
ATTATTTAGAATATAAAAGGGTTCATTTAGTTGCCCAAGTTTCATTATCA
AATGGAAATACAATTTATATCTTCAGGGGTAACGGGCCAAAAATTTTAGT
TAATGGTGAAAATTACTTTGCATATGAAGAATTAATAAAATGTATGGTAA
ACAATTCATTAACAACAGGTGTCAAAATTACCACCTCAATTTATTATTGT
CGATATCAAACTTATCTATGGATTAAAAGATGAAGAGTCAGATATTGAAT
TGGAGCAAACTTTCTTTAATGCAAATCCACAATTTGGTGAATTTGGTACA
AATGTTACTTTGGGCGATCTTTGGGATCCAAACTTTTTACCTGAACATGA
TGTTAAAAGTTGGGCTTTAAATTTATCAGACTGGCAACATGACAATTTAC
CATATAGAATCCCATTCTACCGTAATATTTTAAATTCTGAAAATGATTTA
CCTTTAGTTTTATATATTCATTGTGAATGTGGTTGTGATAGAACTGGAGA
GGTATTTGCTTCATATGCCATGAAATATTTAGGTTATTCATTTAAAGAAG
CAATGGAATGGGATTATAGTATTGCAGGTAGAAGAATTATGATAAATCAT
CAATTTGCAGCTCAATGGTATTGCTACTATTTACAAGTTGCTGAAGGAAT
GACTATTGATTGCTCAGCACCACCTTTATTTGAATAAAAAAAGAAATTTT
TAAAAATAAAAATTAAAGATAATTATTATTTTACAAAAATAAAAAAAAAA
AAAAA
Gap no gap
Contig length 955
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1259034
End point 1258079
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 4
Link to clone list U04232
List of clone(s) 

est1=SSC125E,1,935
est2=SLI882E,224,940
est3=SSF653Z,305,956
est4=SLI826Z,491,940
Translated Amino Acid sequence 
kikkkkkksilrkkkkkknnphinylyfiryiqinil*kkkkkkn*kyf*f*yf*yyhfp
*f*lmvii*nikgfi*lpkfhyqmeiqfissgvtgqkf*lmvkitlhmkn**nvw*tih*
QQVSKLPPQFIIVDIKLIYGLKDEESDIELEQTFFNANPQFGEFGTNVTLGDLWDPNFLP
EHDVKSWALNLSDWQHDNLPYRIPFYRNILNSENDLPLVLYIHCECGCDRTGEVFASYAM
KYLGYSFKEAMEWDYSIAGRRIMINHQFAAQWYCYYLQVAEGMTIDCSAPPLFE*kkkfl
kikikdnyyftkikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kk*kkkkkkvy*ekkkkkkttht*iiyilldtyk*ifykkkkkkkienifnfdifniiif
hsfn*w*lfri*kgsfscpsfiikwkynlylqg*raknfs*w*kllci*rinkmygkqfi
nnrcqnyhlnlllsisnlsmd*kmksqilnwsklslmqihnlvnlvqmllwaifgiqtfy
lnmmlkvgl*iyqtgnmtiyhieshstvif*ilkmiyl*fyifivnvvvieleryllhmp
*ni*vihlkkqwngiivlqveel**iinlqlngiatiykllke*lliaqhhlylnkkrnf
*k*klkiiiilqk*kkkk


Frame B:
knkkkkkkkyiekkkkkkkqpthklfify*ihtnkyfikkkkkkklkifliliflilsfs
ivlingdyleykrvhlvaqvslsngntiyifrgngpkilvngenyfayeelikcmvnnsl
ttgvkittsiyycryqtylwikr*rvry*iganfl*ckstiw*iwykcyfgrslgsklft
*t*c*klgfkfirlat*qfti*npilp*yfkf*k*ftfsfiysl*mwl**nwrgicfich
eifrlfi*rsngmgl*ycr*knydkssicssmvlllftsc*rndy*llsttfi*ikkeif
knkn*r*llfyknkkkkk


Frame C:
kikkkkkksilrkkkkkknnphinylyfiryiqinil*kkkkkkn*kyf*f*yf*yyhfp
*f*lmvii*nikgfi*lpkfhyqmeiqfissgvtgqkf*lmvkitlhmkn**nvw*tih*
QQVSKLPPQFIIVDIKLIYGLKDEESDIELEQTFFNANPQFGEFGTNVTLGDLWDPNFLP
EHDVKSWALNLSDWQHDNLPYRIPFYRNILNSENDLPLVLYIHCECGCDRTGEVFASYAM
KYLGYSFKEAMEWDYSIAGRRIMINHQFAAQWYCYYLQVAEGMTIDCSAPPLFE*kkkfl
kikikdnyyftkikkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04232-1 (Contig-U04232-1Q)
/CSM_Contig/Contig-U04232-1Q.Seq.d
         (955 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Conti...  1360  0.0
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U12851-1 (Contig-U12851-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U11368-1 (Contig-U11368-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U13817-1 (Contig-U13817-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U13150-1 (Contig-U13150-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U13041-1 (Contig-U13041-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12305-1 (Contig-U12305-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U11287-1 (Contig-U11287-1Q) /CSM_Contig/Conti...    34  0.27

>Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Contig-U04232-1Q.Seq.d
          Length = 955

 Score = 1360 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Plus

                                                                       
Query: 197 ggtgattatttagaatataaaagggttcatttagttgcccaagtttcattatcaaatgga 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggtgattatttagaatataaaagggttcatttagttgcccaagtttcattatcaaatgga 256

                                                                       
Query: 257 aatacaatttatatcttcaggggtaacgggccaaaaattttagttaatggtgaaaattac 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatacaatttatatcttcaggggtaacgggccaaaaattttagttaatggtgaaaattac 316

                                                                       
Query: 317 tttgcatatgaagaattaataaaatgtatggtaaacaattcattaacaacaggtgtcaaa 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttgcatatgaagaattaataaaatgtatggtaaacaattcattaacaacaggtgtcaaa 376

                                                                       
Query: 377 attaccacctcaatttattattgtcgatatcaaacttatctatggattaaaagatgaaga 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attaccacctcaatttattattgtcgatatcaaacttatctatggattaaaagatgaaga 436

                                                                       
Query: 437 gtcagatattgaattggagcaaactttctttaatgcaaatccacaatttggtgaatttgg 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtcagatattgaattggagcaaactttctttaatgcaaatccacaatttggtgaatttgg 496

                                                                       
Query: 497 tacaaatgttactttgggcgatctttgggatccaaactttttacctgaacatgatgttaa 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacaaatgttactttgggcgatctttgggatccaaactttttacctgaacatgatgttaa 556

                                                                       
Query: 557 aagttgggctttaaatttatcagactggcaacatgacaatttaccatatagaatcccatt 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagttgggctttaaatttatcagactggcaacatgacaatttaccatatagaatcccatt 616

                                                                       
Query: 617 ctaccgtaatattttaaattctgaaaatgatttacctttagttttatatattcattgtga 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctaccgtaatattttaaattctgaaaatgatttacctttagttttatatattcattgtga 676

                                                                       
Query: 677 atgtggttgtgatagaactggagaggtatttgcttcatatgccatgaaatatttaggtta 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgtggttgtgatagaactggagaggtatttgcttcatatgccatgaaatatttaggtta 736

                                                                       
Query: 737 ttcatttaaagaagcaatggaatgggattatagtattgcaggtagaagaattatgataaa 796
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttcatttaaagaagcaatggaatgggattatagtattgcaggtagaagaattatgataaa 796

                                                                       
Query: 797 tcatcaatttgcagctcaatggtattgctactatttacaagttgctgaaggaatgactat 856
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tcatcaatttgcagctcaatggtattgctactatttacaagttgctgaaggaatgactat 856

                                     
Query: 857 tgattgctcagcaccacctttatttg 882
           ||||||||||||||||||||||||||
Sbjct: 857 tgattgctcagcaccacctttatttg 882


 Score =  111 bits (56), Expect = 1e-24
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                   
Query: 59  caacccacacataaattatttatattttattagatacatacaaataaatattttat 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  caacccacacataaattatttatattttattagatacatacaaataaatattttat 114


 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 918 gataattattattttac 934
           |||||||||||||||||
Sbjct: 918 gataattattattttac 934


>Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Contig-U13863-1Q.Seq.d
          Length = 1323

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 96  atacaaataaatatttta 113
           ||||||||||||||||||
Sbjct: 329 atacaaataaatatttta 346


>Contig-U12851-1 (Contig-U12851-1Q) /CSM_Contig/Contig-U12851-1Q.Seq.d
          Length = 533

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 627 attttaaattctgaaaat 644
           ||||||||||||||||||
Sbjct: 412 attttaaattctgaaaat 429


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,427
Number of Sequences: 6905
Number of extensions: 15427
Number of successful extensions: 1541
Number of sequences better than 10.0: 149
length of query: 955
length of database: 5,674,871
effective HSP length: 16
effective length of query: 939
effective length of database: 5,564,391
effective search space: 5224963149
effective search space used: 5224963149
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.14
Homology vs DNA 
Query= Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Contig-U04232-1Q.Seq.d
         (955 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92892) Dictyostelium discoideum slug cDNA, clone SSF653.       1007   0.0    2
(C92054) Dictyostelium discoideum slug cDNA, clone SSC125.       1007   0.0    2
(AU053546) Dictyostelium discoideum slug cDNA, clone SLI882.      918   0.0    1
(AU053517) Dictyostelium discoideum slug cDNA, clone SLI826.      777   0.0    1
(AU062279) Dictyostelium discoideum slug cDNA, clone SLI882.      283   e-145  2
(AU071626) Dictyostelium discoideum slug cDNA, clone SSC125.      111   6e-32  2
(AQ821712) HS_5431_A2_C08_SP6E RPCI-11 Human Male BAC Librar...    38   0.009  2
(AC224486) Bos taurus clone CH240-484A2, WORKING DRAFT SEQUE...    50   0.16   1
(AC173102) Bos taurus clone CH240-177B20, WORKING DRAFT SEQU...    50   0.16   1
(CV744212) SJAL_051_06.T3###seg1 SJL Schistosoma japonicum c...    50   0.16   1
(AC125926) Rattus norvegicus clone CH230-460A3, WORKING DRAF...    40   0.35   6
(CR855140) Oryza sativa genomic DNA, chromosome 4, BAC clone...    36   0.36   2
(CR855141) Oryza sativa genomic DNA, chromosome 4, BAC clone...    36   0.37   2
(FH430802) CHO_OF4928xb19f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   0.46   2
(FI034978) CHO_OF6449xe11f1.ab1 CHO_OF6 Nicotiana tabacum ge...    36   0.46   2
(ET894124) CHO_OF380xc06r1.ab1 CHO_OF Nicotiana tabacum geno...    36   0.46   2
(FH726694) CHO_OF5090xa03r1.ab1 CHO_OF5 Nicotiana tabacum ge...    36   0.47   2
(EF692493) Solanum lycopersicum chromosome 9 clone C09SLm012...    34   0.59   4
(CR855996) Zebrafish DNA sequence from clone DKEY-219B24 in ...    48   0.63   1
(ES585022) Hm_pwAE2_08H02_M13rev Amplicon Express mixed pupa...    48   0.63   1
(EU139070) Solanum lycopersicum chromosome 9 clone C09HBa010...    34   0.87   4
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    36   0.99   6
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    34   1.6    9
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   2.1    9
(AC218765) Bos taurus clone CH240-294P8, WORKING DRAFT SEQUE...    34   2.2    7
(CU747405) A BAC library has been constructed from PN40024 g...    34   2.3    3
(CQ587639) Sequence 15397 from Patent WO0171042.                   46   2.5    1
(CQ587300) Sequence 15058 from Patent WO0171042.                   46   2.5    1
(AR526148) Sequence 31108 from patent US 6703491.                  46   2.5    1
(AR509895) Sequence 14855 from patent US 6703491.                  46   2.5    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    46   2.5    1
(AC091209) Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ...    46   2.5    1
(AC010071) Drosophila melanogaster 3L BAC RP98-18G16 (Roswel...    46   2.5    1
(AC068308) Homo sapiens 3 BAC RP11-275H4 (Roswell Park Cance...    46   2.5    1
(CU856232) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(CU633512) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(CU074281) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(AC019850) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   2.5    1
(FI478946) CH322-73F06.y CHORI-322 Drosophila melanogaster g...    46   2.5    1
(FI442200) CH322-17C13.x CHORI-322 Drosophila melanogaster g...    46   2.5    1
(FI383115) CH322-05M06.x CHORI-322 Drosophila melanogaster g...    46   2.5    1
(DX405842) GR_Sa0004B16.b1 Gossypium raimondii WGS library G...    46   2.5    1
(CT267019) Sus scrofa genomic clone CH242-193I15, genomic su...    46   2.5    1
(CL528001) EY07308 Drosophila melanogaster P{EPgy2} P elemen...    46   2.5    1
(BX970547) Forward strand read from insert in 5'HPRT inserti...    46   2.5    1
(EC227044) 414787 CK01 Drosophila melanogaster cDNA clone 16...    46   2.5    1
(EC227042) 414785 CK01 Drosophila melanogaster cDNA clone 16...    46   2.5    1
(EC079379) 520360 CK01 Drosophila melanogaster cDNA clone 28...    46   2.5    1
(CO317615) EK268624.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    46   2.5    1
(CO317613) EK268621.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    46   2.5    1
(FK749577) av02051n24r1.1 Symbiotic sea anemone (Anemonia vi...    46   2.5    1
(FK722529) av02072k13r1.1 Symbiotic sea anemone (Anemonia vi...    46   2.5    1
(AC199584) Macaca mulatta clone CH250-171P13, WORKING DRAFT ...    36   2.6    4
(CD519847) AGENCOURT_14390926 NICHD_XGC_Eye1 Xenopus laevis ...    40   2.8    2
(AL356437) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   3.0    4
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    32   3.1    2
(AF482386) Dictyostelium discoideum ABC transporter AbcG7 (a...    36   3.2    3
(CT487680) A BAC library has been constructed from cultivar ...    34   3.5    3
(AP002887) Homo sapiens genomic DNA, chromosome 11q, clone:R...    38   3.5    7
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    32   4.6    10
(CR855129) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   4.6    2
(AC187989) Pan troglodytes chromosome 7 clone CH251-31K17, c...    34   4.7    2
(AC185347) Pan troglodytes BAC clone CH251-380C5 from chromo...    34   4.7    2
(CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l...    32   4.7    2
(AL606628) Oryza sativa genomic DNA, chromosome 4, BAC clone...    32   4.7    2
(AC175629) Atelerix albiventris clone LB4-291J20, WORKING DR...    32   4.8    2
(BD452771) Diagnosis of Diseases Associated with tumor suppr...    32   5.7    2
(AX251250) Sequence 218 from Patent WO0168912.                     32   5.7    2
(EJ134054) 1092343585313 Global-Ocean-Sampling_GS-27-01-01-1...    30   6.0    4
(EJ404695) 1093012081111 Global-Ocean-Sampling_GS-28-01-01-1...    32   6.3    2
(AF143971) Pinus taeda microsatellite PtTX3026 sequence.           34   6.4    2
(CT790643) Paramecium tetraurelia 5-PRIME EST from clone LK0...    32   6.5    2
(AG178166) Pan troglodytes DNA, clone: RP43-050A22.T7.             42   6.5    2
(ER975387) MUGQ_CH252P295H06T7_CP460_025 CHORI-252 Vervet Mo...    40   7.0    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         30   7.5    10
(AC022356) Homo sapiens clone RP11-26L4, WORKING DRAFT SEQUE...    34   8.1    4
(BX005010) Zebrafish DNA sequence from clone DKEY-8F16 in li...    34   8.3    9
(AC217718) Solanum tuberosum chromosome 1 clone RH089B02, **...    38   9.0    3
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    32   9.4    10
(BX908393) Zebrafish DNA sequence from clone CH211-180H19 in...    44   9.8    1
(AL935318) Zebrafish DNA sequence from clone CH211-251L7 in ...    44   9.8    1
(AL772146) Zebrafish DNA sequence from clone CH211-12P8 in l...    44   9.8    1
(AL732496) Mouse DNA sequence from clone RP23-35G10 on chrom...    44   9.8    1
(AC132088) Mus musculus BAC clone RP24-410M8 from chromosome...    44   9.8    1
(AC115976) Mus musculus chromosome 1, clone RP24-82A12, comp...    44   9.8    1
(AC102551) Mus musculus chromosome 16, clone RP23-154N19, co...    44   9.8    1
(AC200529) Pan troglodytes BAC clone CH251-688B15 from chrom...    44   9.8    1
(AC192477) Pan troglodytes BAC clone CH251-623A12 from chrom...    44   9.8    1
(AM480907) Vitis vinifera, whole genome shotgun sequence, co...    44   9.8    1
(AJ310443) Gibberella fujikuroi gs gene for glutamine synthe...    44   9.8    1
(AB005242) Arabidopsis thaliana genomic DNA, chromosome 5, P...    44   9.8    1
(BD452708) Diagnosis of Diseases Associated with tumor suppr...    44   9.8    1
(AX251187) Sequence 155 from Patent WO0168912.                     44   9.8    1
(AY060028) Artoria flavimanus tRNA-Leu (trnL) gene, partial ...    44   9.8    1
(AL390966) Human DNA sequence from clone RP11-155I19 on chro...    44   9.8    1
(AC104131) Homo sapiens BAC clone RP11-324H23 from 2, comple...    44   9.8    1
(AC151190) Bos taurus clone CH240-141M8, *** SEQUENCING IN P...    44   9.8    1
(AC151101) Bos taurus clone CH240-21G17, WORKING DRAFT SEQUE...    44   9.8    1
(AC099903) Mus musculus clone RP23-12I6, LOW-PASS SEQUENCE S...    44   9.8    1
(AC094642) Rattus norvegicus clone CH230-5B17, *** SEQUENCIN...    44   9.8    1
(CR855370) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.8    1
(AC221132) Bos taurus clone CH240-394E2, WORKING DRAFT SEQUE...    44   9.8    1
(AC219841) Bos taurus clone CH240-320J23, WORKING DRAFT SEQU...    44   9.8    1
(AC214584) Bos taurus clone CH240-128H19, WORKING DRAFT SEQU...    44   9.8    1
(AC164447) Bos taurus clone CH240-153O23, *** SEQUENCING IN ...    44   9.8    1
(AC016281) Homo sapiens clone RP11-20P24, LOW-PASS SEQUENCE ...    44   9.8    1
(ER365402) 1093018991148 Global-Ocean-Sampling_GS-34-01-01-1...    44   9.8    1
(EJ338044) 1092963494273 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.8    1
(EJ239789) 1095328025297 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.8    1
(EI311435) GM_WBc0042D23.f GM_WBc Glycine max genomic clone ...    44   9.8    1
(EI294439) GM_WBc0017L13.r GM_WBc Glycine max genomic clone ...    44   9.8    1
(AJ529910) Arabidopsis thaliana T-DNA flanking sequence, lef...    44   9.8    1
(CR064932) Reverse strand read from insert in 5'HPRT inserti...    44   9.8    1
(BH794413) ME_MBa0002N14f Manihot esculenta Manihot esculent...    44   9.8    1
(AM796391) Nicotiana tabacum EST, clone nt006001037.               44   9.8    1
(CO162421) FLD1_35_E02.b1_A029 Root flooded Pinus taeda cDNA...    44   9.8    1
(CI648498) Oryza sativa Japonica Group cDNA, clone: J06B5094...    44   9.8    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    44   9.8    1
(AE017263) Mesoplasma florum L1 complete genome.                   44   9.8    1

>(C92892) Dictyostelium discoideum slug cDNA, clone SSF653.
          Length = 651

 Score = 1007 bits (508), Expect(2) = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Plus


Query: 375 aaattaccacctcaatttattattgtcgatatcaaacttatctatggattaaaagatgaa 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaattaccacctcaatttattattgtcgatatcaaacttatctatggattaaaagatgaa 129


Query: 435 gagtcagatattgaattggagcaaactttctttaatgcaaatccacaatttggtgaattt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gagtcagatattgaattggagcaaactttctttaatgcaaatccacaatttggtgaattt 189


Query: 495 ggtacaaatgttactttgggcgatctttgggatccaaactttttacctgaacatgatgtt 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggtacaaatgttactttgggcgatctttgggatccaaactttttacctgaacatgatgtt 249


Query: 555 aaaagttgggctttaaatttatcagactggcaacatgacaatttaccatatagaatccca 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaagttgggctttaaatttatcagactggcaacatgacaatttaccatatagaatccca 309


Query: 615 ttctaccgtaatattttaaattctgaaaatgatttacctttagttttatatattcattgt 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttctaccgtaatattttaaattctgaaaatgatttacctttagttttatatattcattgt 369


Query: 675 gaatgtggttgtgatagaactggagaggtatttgcttcatatgccatgaaatatttaggt 734
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaatgtggttgtgatagaactggagaggtatttgcttcatatgccatgaaatatttaggt 429


Query: 735 tattcatttaaagaagcaatggaatgggattatagtattgcaggtagaagaattatgata 794
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tattcatttaaagaagcaatggaatgggattatagtattgcaggtagaagaattatgata 489


Query: 795 aatcatcaatttgcagctcaatggtattgctactatttacaagttgctgaaggaatgact 854
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aatcatcaatttgcagctcaatggtattgctactatttacaagttgctgaaggaatgact 549


Query: 855 attgattgctcagcaccacctttatttg 882
           ||||||||||||||||||||||||||||
Sbjct: 550 attgattgctcagcaccacctttatttg 577

 Score =  143 bits (72), Expect(2) = 0.0
 Identities = 72/72 (100%)
 Strand = Plus / Plus


Query: 305 ggtgaaaattactttgcatatgaagaattaataaaatgtatggtaaacaattcattaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtgaaaattactttgcatatgaagaattaataaaatgtatggtaaacaattcattaaca 60


Query: 365 acaggtgtcaaa 376
           ||||||||||||
Sbjct: 61  acaggtgtcaaa 72

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,054,666,054
Number of extensions: 66720383
Number of successful extensions: 5456574
Number of sequences better than 10.0: 121
Length of query: 955
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 931
Effective length of database: 99,340,224,878
Effective search space: 92485749361418
Effective search space used: 92485749361418
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Contig-U04232-1Q.Seq.d
         (955 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM167904_2903(AM167904|pid:none) Bordetella avium 197N complete ...    80   8e-14
FN357653_10(FN357653|pid:none) Schistosoma mansoni genome sequen...    39   0.20
(P40479) RecName: Full=Dual-specificity protein phosphatase SDP1...    39   0.35
FN392321_631(FN392321|pid:none) Pichia pastoris GS115 chromosome...    38   0.59
AE014134_1406(AE014134|pid:none) Drosophila melanogaster chromos...    38   0.59
CU928166_220(CU928166|pid:none) Kluyveromyces thermotolerans str...    38   0.59
(O94526) RecName: Full=Phosphatidylinositol-3,4,5-trisphosphate ...    37   0.77
CR382136_573(CR382136|pid:none) Debaryomyces hansenii strain CBS...    37   0.77
BC074311_1(BC074311|pid:none) Xenopus laevis cell division cycle...    36   1.7
AY530633_1(AY530633|pid:none) Xenopus laevis cell division cycle...    36   1.7
AK036556_1(AK036556|pid:none) Mus musculus adult male bone cDNA,...    36   2.2
AF000367_1(AF000367|pid:none) Homo sapiens cdc14 homolog mRNA, c...    36   2.2
AL646053_1470(AL646053|pid:none) Ralstonia solanacearum GMI1000 ...    36   2.2
(Q9UNH5) RecName: Full=Dual specificity protein phosphatase CDC1...    36   2.2
BC072644_1(BC072644|pid:none) Mus musculus CDC14 cell division c...    36   2.2
D17548_1(D17548|pid:none) Saccharomyces cerevisiae MSG5 gene for...    36   2.2
CP000152_549(CP000152|pid:none) Burkholderia sp. 383 chromosome ...    36   2.2
CU695240_888(CU695240|pid:none) Ralstonia solanacearum strain Mo...    36   2.2
AB209857_1(AB209857|pid:none) Homo sapiens mRNA for CDC14 homolo...    36   2.2
(P38590) RecName: Full=Tyrosine-protein phosphatase MSG5;       ...    35   2.9
EU839994_31(EU839994|pid:none) Agrotis ipsilon multiple nucleopo...    35   2.9
FM992688_435(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   3.8
CU468033_2(CU468033|pid:none) Zebrafish DNA sequence from clone ...    35   3.8
AB298504_52(AB298504|pid:none) Klebsiella pneumoniae DNA, integr...    35   5.0
AL935260_23(AL935260|pid:none) Lactobacillus plantarum strain WC...    34   6.5
BC045476_1(BC045476|pid:none) Danio rerio CDC14 cell division cy...    34   6.5
BC136223_1(BC136223|pid:none) Xenopus tropicalis CDC14 cell divi...    34   6.5
CR382126_156(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    34   6.5
BT059446_1(BT059446|pid:none) Salmo salar clone ssal-rgf-538-006...    34   6.5
BX908733_1(BX908733|pid:none) Zebrafish DNA sequence from clone ...    34   8.5
(Q54Y32) RecName: Full=MAP kinase phosphatase with leucine-rich ...    34   8.5
CP001390_67(CP001390|pid:none) Geobacter sp. FRC-32, complete ge...    34   8.5
CR382132_34(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    34   8.5
BC055188_1(BC055188|pid:none) Danio rerio CDC14 cell division cy...    34   8.5
AJ313509_1(AJ313509|pid:none) Lycopersicon esculentum mRNA for p...    34   8.5
AL953893_3(AL953893|pid:none) Zebrafish DNA sequence from clone ...    34   8.5
AY250076_2(AY250076|pid:none) Spodoptera frugiperda MNPV isolate...    34   8.5
CR380958_175(CR380958|pid:none) Candida glabrata strain CBS138 c...    34   8.5

>AM167904_2903(AM167904|pid:none) Bordetella avium 197N complete
           genome.
          Length = 237

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
 Frame = +3

Query: 369 VSKLPPQFIIVDIKLIYGLKDEE-SDIELEQTFFNANPQFGEFGTNVTLGDLWDPNFLPE 545
           V+ LP +F ++D+ L   L   E +D ++E  ++  + Q G   ++   G +  P+  P+
Sbjct: 74  VAPLPSRFYMIDVSLTSDLLPHEFADKKVEAEYWRQHSQAGRLISHPVFGAVTSPDDFPD 133

Query: 546 HDV-KSWALNLSDWQHDNLPYRIPFYRNILNSEND--LPLVLYIHCECGCDRTGEVFASY 716
               K  AL   D        R+P     L+ E     P V+Y+HCE G DRTGEV A+Y
Sbjct: 134 VPRRKISALPGVD--------RLPELLAALHQEMSECTPTVIYVHCEAGKDRTGEVIAAY 185

Query: 717 AMKYLGYSFKEAMEWDYSIAGRRIMINHQFAAQWYCYYLQ 836
           +M+YL  S+++A+     IAGR +   ++ A +WY YYL+
Sbjct: 186 SMQYLRLSYRDALAQAREIAGRHLNRFNEQAMRWYAYYLR 225

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,311,360,312
Number of extensions: 24753436
Number of successful extensions: 58126
Number of sequences better than 10.0: 38
Number of HSP's gapped: 58113
Number of HSP's successfully gapped: 38
Length of query: 318
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 190
Effective length of database: 642,824,337
Effective search space: 122136624030
Effective search space used: 122136624030
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.87  gvh: 0.32  alm: 0.45  top: 0.20  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04232-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0