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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04169-1
Contig ID Contig-U04169-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Contig-U04169-1Q.Seq.d
GTTTTGCAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAANATATAGCAA
AACAAAACAAAATAAAATAAAATAAAACAAAAAAAAAATAAAATAATAAA
ATTAGAATTTTTTAGCACAGATAGAGTAATATTATAAACGAATTAGTAAT
ATCAAAAAAAAAAAATAATAATTAAATATGTCATCATTAAATAAATCAAT
TGGAAGTGTTACAGAATCACCAATTAATGTAGTAGTTCATAATTATGATA
ATAATGACCCAACAGAAACTAGACATGAAGTTCAAACTAAACATGGTAAA
TTAGTTTGTTTTCAAAAAATAGGTTCAAATCAATCACCAAATATGCCAAC
AATAATTTCTTATCATGATTTGGGATTAAATCATACAACATGTTTTTCAC
CATTTTTCAATCATCCAAATATGAATCATATTTTACCATATTTAAATATT
ATTCATATC
Gap no gap
Contig length 459
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4639968
End point 4640427
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04169
List of clone(s) 

est1=SLH239F,1,460
Translated Amino Acid sequence 
vlqskkkkkkkkkxysktkqnkik*nkkkik**n*nflaqie*yykrisnikkkk**LNM
SSLNKSIGSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIIS
YHDLGLNHTTCFSPFFNHPNMNHILPYLNIIHI
Translated Amino Acid sequence (All Frames) 
Frame A:
vlqskkkkkkkkkxysktkqnkik*nkkkik**n*nflaqie*yykrisnikkkk**LNM
SSLNKSIGSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIIS
YHDLGLNHTTCFSPFFNHPNMNHILPYLNIIHI


Frame B:
fcrakkkkkkkkkxiakqnkik*nktkkk*nnkirif*hr*sniinelviskkknnn*ic
hh*inqlevlqnhqlm**fiimiimtqqkldmkfklnmvn*fvfkk*vqinhqicqq*fl
imiwd*iiqhvfhhfsiiqi*iifyhi*ilfi


Frame C:
faeqkkkkkkkkxi*qnktk*nkikqkknkiikleffstdrvil*tn**yqkkkiiikyv
iik*inwkcyritn*csss*l****pnrn*t*ssn*tw*islfsknrfksitkyannnfl
s*fgiksynmfftifqsskyesyftifkyysy
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U04169-1 (Contig-U04169-1Q)
/CSM_Contig/Contig-U04169-1Q.Seq.d
         (459 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Conti...   638  0.0
Contig-U12067-1 (Contig-U12067-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U11324-1 (Contig-U11324-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U03443-1 (Contig-U03443-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U13565-1 (Contig-U13565-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U12161-1 (Contig-U12161-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U04178-1 (Contig-U04178-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti...    28  7.7

>Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Contig-U04169-1Q.Seq.d
          Length = 459

 Score =  638 bits (322), Expect = 0.0
 Identities = 346/358 (96%)
 Strand = Plus / Plus

                                                                       
Query: 102 ttagaattttttagcacagatagagtaatattataaacgaattagtaatatcnnnnnnnn 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 102 ttagaattttttagcacagatagagtaatattataaacgaattagtaatatcaaaaaaaa 161

                                                                       
Query: 162 nnnntaataattaaatatgtcatcattaaataaatcaattggaagtgttacagaatcacc 221
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaaataataattaaatatgtcatcattaaataaatcaattggaagtgttacagaatcacc 221

                                                                       
Query: 222 aattaatgtagtagttcataattatgataataatgacccaacagaaactagacatgaagt 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aattaatgtagtagttcataattatgataataatgacccaacagaaactagacatgaagt 281

                                                                       
Query: 282 tcaaactaaacatggtaaattagtttgttttcaaaaaataggttcaaatcaatcaccaaa 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcaaactaaacatggtaaattagtttgttttcaaaaaataggttcaaatcaatcaccaaa 341

                                                                       
Query: 342 tatgccaacaataatttcttatcatgatttgggattaaatcatacaacatgtttttcacc 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tatgccaacaataatttcttatcatgatttgggattaaatcatacaacatgtttttcacc 401

                                                                     
Query: 402 atttttcaatcatccaaatatgaatcatattttaccatatttaaatattattcatatc 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atttttcaatcatccaaatatgaatcatattttaccatatttaaatattattcatatc 459


>Contig-U12067-1 (Contig-U12067-1Q) /CSM_Contig/Contig-U12067-1Q.Seq.d
          Length = 2439

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 330  tcaatcaccaaatatgccaac 350
            |||||||||||||||||||||
Sbjct: 1974 tcaatcaccaaatatgccaac 1994


>Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Contig-U13325-1Q.Seq.d
          Length = 728

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 418 aatatgaatcatattttac 436
           |||||||||||||||||||
Sbjct: 652 aatatgaatcatattttac 670


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7371
Number of Sequences: 6905
Number of extensions: 7371
Number of successful extensions: 870
Number of sequences better than 10.0: 267
length of query: 459
length of database: 5,674,871
effective HSP length: 16
effective length of query: 443
effective length of database: 5,564,391
effective search space: 2465025213
effective search space used: 2465025213
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.14
Homology vs DNA 
Query= Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Contig-U04169-1Q.Seq.d
         (459 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062022) Dictyostelium discoideum slug cDNA, clone SLH239.      583   0.0    2
(AL034558) Plasmodium falciparum MAL3P2.                           40   0.11   6
(AC220058) Solanum lycopersicum chromosome 11 clone C11HBa01...    48   0.29   1
(AC163763) Pan troglodytes BAC clone CH251-180G5 from chromo...    40   1.1    2
(AC110574) Mus musculus chromosome 3, clone RP23-324B15, com...    46   1.2    1
(DL201475) NOVEL THERAPEUTIC TARGETS IN CANCER.                    46   1.2    1
(CU915790) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(EJ256683) 1095349014362 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.2    1
(EB920625) 12401580 ZF31 Danio rerio cDNA clone 3275207, mRN...    46   1.2    1
(FG293076) 1108770657463 New World Screwworm Larvae 9387 EST...    46   1.2    1
(AC157826) Pan troglodytes BAC clone CH251-276A2 from chromo...    40   1.3    2
(AC184294) Strongylocentrotus purpuratus clone R3-18E9, WORK...    40   2.2    3
(AM452174) Vitis vinifera contig VV78X181418.4, whole genome...    34   2.5    3
(AM871944) Venerupis (Ruditapes) decussatus EST, 5' end sequ...    32   3.1    2
(AM870295) Venerupis (Ruditapes) decussatus EST, 5' end sequ...    32   3.1    2
(AC128643) Oryza sativa Japonica Group chromosome 11 clone O...    38   3.3    4
(AC124218) Medicago truncatula clone mth2-30b20, complete se...    36   3.9    5
(BX322567) Zebrafish DNA sequence from clone CH211-240G9 in ...    38   4.3    2
(AC179409) Strongylocentrotus purpuratus clone R3-1101C16, W...    34   4.4    4
(AC201503) Strongylocentrotus purpuratus clone R3-3078I11, W...    42   4.5    2
(CR847882) Zebrafish DNA sequence from clone RP71-18L21 in l...    44   4.6    1
(BX890591) Zebrafish DNA sequence from clone DKEY-184J23 in ...    44   4.6    1
(AC213382) Gallus gallus BAC clone CH261-92E20 from chromoso...    44   4.6    1
(AC188821) Gallus gallus BAC clone CH261-176F11 from chromos...    44   4.6    1
(BV302704) S236P672FA6.T0 AlaskanMalamute Canis familiaris S...    44   4.6    1
(AC149997) Strongylocentrotus purpuratus clone R3-60E22, WOR...    44   4.6    1
(AC095212) Rattus norvegicus clone CH230-9E4, *** SEQUENCING...    44   4.6    1
(AC188279) Chlorocebus aethiops clone CH252-221C2, WORKING D...    44   4.6    1
(AC180216) Strongylocentrotus purpuratus clone R3-3006P09, W...    44   4.6    1
(AC180043) Strongylocentrotus purpuratus clone R3-3030M18, W...    44   4.6    1
(AC178698) Strongylocentrotus purpuratus clone R3-3006H05, W...    44   4.6    1
(AC176581) Strongylocentrotus purpuratus clone R3-114G06, WO...    44   4.6    1
(AC176394) Strongylocentrotus purpuratus clone R3-3013D19, W...    44   4.6    1
(AC175926) Strongylocentrotus purpuratus clone R3-15M23, WOR...    44   4.6    1
(AC168475) Strongylocentrotus purpuratus clone R3-3117O8, WO...    44   4.6    1
(FH945521) CHO_OF6742xh24r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   4.6    1
(FH537522) CHO_OF4130xj02r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.6    1
(FK084536) XABT138971.g1 Gateway compatible cien cDNA librar...    44   4.6    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    44   4.6    1
(AC189612) Brassica rapa subsp. pekinensis clone KBrH070D09,...    36   4.7    4
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    38   5.0    7
(CR931802) Zebrafish DNA sequence from clone CH211-223A10 in...    36   5.7    3
(AG115144) Pan troglodytes DNA, clone: PTB-122E16.R.               38   5.7    2
(CR762412) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   6.5    3
(AC181812) Strongylocentrotus purpuratus clone R3-1024C08, W...    38   8.7    5
(AC168542) Strongylocentrotus purpuratus clone R3-3091L20, W...    36   9.9    4

>(AU062022) Dictyostelium discoideum slug cDNA, clone SLH239.
          Length = 460

 Score =  583 bits (294), Expect(2) = 0.0
 Identities = 294/294 (100%)
 Strand = Plus / Plus


Query: 166 taataattaaatatgtcatcattaaataaatcaattggaagtgttacagaatcaccaatt 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 taataattaaatatgtcatcattaaataaatcaattggaagtgttacagaatcaccaatt 225


Query: 226 aatgtagtagttcataattatgataataatgacccaacagaaactagacatgaagttcaa 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aatgtagtagttcataattatgataataatgacccaacagaaactagacatgaagttcaa 285


Query: 286 actaaacatggtaaattagtttgttttcaaaaaataggttcaaatcaatcaccaaatatg 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 actaaacatggtaaattagtttgttttcaaaaaataggttcaaatcaatcaccaaatatg 345


Query: 346 ccaacaataatttcttatcatgatttgggattaaatcatacaacatgtttttcaccattt 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccaacaataatttcttatcatgatttgggattaaatcatacaacatgtttttcaccattt 405


Query: 406 ttcaatcatccaaatatgaatcatattttaccatatttaaatattattcatatc 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttcaatcatccaaatatgaatcatattttaccatatttaaatattattcatatc 459

 Score =  101 bits (51), Expect(2) = 0.0
 Identities = 51/51 (100%)
 Strand = Plus / Plus


Query: 103 tagaattttttagcacagatagagtaatattataaacgaattagtaatatc 153
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tagaattttttagcacagatagagtaatattataaacgaattagtaatatc 153

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 526,205,572
Number of extensions: 32530353
Number of successful extensions: 2774365
Number of sequences better than 10.0: 49
Length of query: 459
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 436
Effective length of database: 99,442,330,388
Effective search space: 43356856049168
Effective search space used: 43356856049168
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Contig-U04169-1Q.Seq.d
         (459 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BX3) RecName: Full=NDRG-like protein;                             189   3e-47
BT045161_1(BT045161|pid:none) Salmo salar clone ssal-rgf-513-335...    59   5e-08
BT045858_1(BT045858|pid:none) Salmo salar clone ssal-rgf-534-339...    59   7e-08
(Q7ZWV3) RecName: Full=Protein NDRG1-B;          Short=xNDRG1-B;...    57   2e-07
CT573122_4(CT573122|pid:none) Zebrafish DNA sequence from clone ...    57   3e-07
AJ579376_1(AJ579376|pid:none) Danio rerio mRNA for N-myc downstr...    57   3e-07
AL031662_6(AL031662|pid:none) Human DNA sequence from clone RP3-...    57   3e-07
AF251054_1(AF251054|pid:none) Homo sapiens NDR3 mRNA, complete c...    56   3e-07
(Q641F2) Protein NDRG1-A (xNDRG1-A).  &BC082385_1(BC082385|pid:n...    56   3e-07
AL031662_5(AL031662|pid:none) Human DNA sequence from clone RP3-...    56   3e-07
AL031662_4(AL031662|pid:none) Human DNA sequence from clone RP3-...    56   3e-07
BT058937_1(BT058937|pid:none) Salmo salar clone ssal-rgf-514-312...    55   6e-07
BC055138_1(BC055138|pid:none) Danio rerio N-myc downstream regul...    55   8e-07
AK036277_1(AK036277|pid:none) Mus musculus 16 days neonate cereb...    55   8e-07
(Q6AYR2) RecName: Full=Protein NDRG3;  &BC078946_1(BC078946|pid:...    55   8e-07
(Q5RA95) RecName: Full=Protein NDRG3;  &CR859123_1(CR859123|pid:...    55   8e-07
AB170679_1(AB170679|pid:none) Macaca fascicularis brain cDNA clo...    54   1e-06
(Q6GQL1) RecName: Full=Protein NDRG3;  &BC072731_1(BC072731|pid:...    54   1e-06
BC084357_1(BC084357|pid:none) Xenopus laevis MGC84035 protein, m...    54   2e-06
DQ216700_1(DQ216700|pid:none) Taeniopygia guttata clone 0061P002...    54   2e-06
EF191986_1(EF191986|pid:none) Taeniopygia guttata clone 0069P000...    54   2e-06
(Q640Z1) RecName: Full=Protein NDRG4-A;  &BC082448_1(BC082448|pi...    54   2e-06
AK299949_1(AK299949|pid:none) Homo sapiens cDNA FLJ54542 complet...    54   2e-06
CS566128_1(CS566128|pid:none) Sequence 7 from Patent WO200603678...    53   3e-06
(Q6JE36) RecName: Full=Protein NDRG1; AltName: Full=N-myc downst...    53   3e-06
(Q92597) RecName: Full=Protein NDRG1; AltName: Full=N-myc downst...    53   3e-06
AK223542_1(AK223542|pid:none) Homo sapiens mRNA for N-myc downst...    53   3e-06
AK170439_1(AK170439|pid:none) Mus musculus NOD-derived CD11c +ve...    53   3e-06
(Q62433) RecName: Full=Protein NDRG1; AltName: Full=N-myc downst...    53   3e-06
BC120117_1(BC120117|pid:none) Bos taurus NDRG family member 4, m...    53   4e-06
AK126574_1(AK126574|pid:none) Homo sapiens cDNA FLJ44611 fis, cl...    53   4e-06
AX884856_1(AX884856|pid:none) Sequence 719 from Patent EP1033401.      53   4e-06
(Q6DFS4) RecName: Full=Protein NDRG3;  &BC076659_1(BC076659|pid:...    53   4e-06
AB033006_1(AB033006|pid:none) Homo sapiens mRNA for KIAA1180 pro...    53   4e-06
AF308608_1(AF308608|pid:none) Homo sapiens development-related p...    53   4e-06
BC006595_1(BC006595|pid:none) Mus musculus N-myc downstream regu...    53   4e-06
AB044944_1(AB044944|pid:none) Homo sapiens mRNA for NDRG4-B, com...    53   4e-06
AB174177_1(AB174177|pid:none) Macaca fascicularis brain cDNA clo...    53   4e-06
AK296415_1(AK296415|pid:none) Homo sapiens cDNA FLJ52553 complet...    53   4e-06
(Q3SYX0) RecName: Full=Protein NDRG1; AltName: Full=N-myc downst...    52   5e-06
U52073_1(U52073|pid:none) Mus musculus TDD5 mRNA, complete cds.        52   6e-06
AY277597_1(AY277597|pid:none) Homo sapiens transformation-relate...    52   8e-06
BC171968_1(BC171968|pid:none) Mus musculus N-myc downstream regu...    50   2e-05
(Q9Z2L9) RecName: Full=Protein NDRG4; AltName: Full=Brain develo...    50   3e-05
AY217031_1(AY217031|pid:none) Rattus norvegicus brain and heart ...    50   3e-05
AY217033_1(AY217033|pid:none) Rattus norvegicus brain and heart ...    50   3e-05
AY217032_1(AY217032|pid:none) Rattus norvegicus brain and heart ...    50   3e-05
EU677471_1(EU677471|pid:none) Macropus eugenii NDRG family membe...    50   3e-05
AF524894_2(AF524894|pid:none) Rattus norvegicus NDRG4 (Ndrg4) ge...    50   3e-05
AB385441_1(AB385441|pid:none) Synthetic construct DNA, clone: pF...    49   4e-05
AB033074_1(AB033074|pid:none) Homo sapiens mRNA for KIAA1248 pro...    49   4e-05
AF087872_1(AF087872|pid:none) Homo sapiens cytoplasmic protein N...    49   4e-05
CR860599_1(CR860599|pid:none) Pongo abelii mRNA; cDNA DKFZp459G2...    49   4e-05
BX247987_1(BX247987|pid:none) human full-length cDNA clone CS0DF...    49   4e-05
BC093038_1(BC093038|pid:none) Homo sapiens NDRG family member 2,...    49   4e-05
(Q3ZBA8) RecName: Full=Protein NDRG2;  &BC103467_1(BC103467|pid:...    49   4e-05
BC116615_1(BC116615|pid:none) Danio rerio zgc:136766, mRNA (cDNA...    49   4e-05
AK293514_1(AK293514|pid:none) Homo sapiens cDNA FLJ55190 complet...    49   4e-05
AL772241_1(AL772241|pid:none) Zebrafish DNA sequence from clone ...    49   4e-05
(Q4R4K0) RecName: Full=Protein NDRG2;  &AB169894_1(AB169894|pid:...    49   5e-05
AK158900_1(AK158900|pid:none) Mus musculus visual cortex cDNA, R...    49   5e-05
AY151387_1(AY151387|pid:none) Mus musculus NDR2 (Ndr2) gene, par...    48   9e-05
(Q9QYG0) RecName: Full=Protein NDRG2; AltName: Full=Protein Ndr2...    48   9e-05
AF334105_1(AF334105|pid:none) Rattus norvegicus antidepressant-r...    48   9e-05
AJ426425_1(AJ426425|pid:none) Rattus norvegicus mRNA for NDRG1 r...    48   9e-05
(Q8VBU2) RecName: Full=Protein NDRG2; AltName: Full=NDRG1-relate...    48   9e-05
AF334106_1(AF334106|pid:none) Rattus norvegicus antidepressant-r...    48   9e-05
BC057420_1(BC057420|pid:none) Danio rerio N-myc downstream regul...    47   3e-04
BC011240_1(BC011240|pid:none) Homo sapiens NDRG family member 2,...    46   5e-04
EF015583_1(EF015583|pid:none) Gallus gallus NDRG3 gene, exons 4,...    46   5e-04
AY222998_1(AY222998|pid:none) Schistosoma japonicum clone ZZD107...    45   6e-04
BT001267_1(BT001267|pid:none) Drosophila melanogaster AT04445 fu...    45   8e-04
AE013599_3416(AE013599|pid:none) Drosophila melanogaster chromos...    45   8e-04
AE013599_3418(AE013599|pid:none) Drosophila melanogaster chromos...    45   8e-04
BT001311_1(BT001311|pid:none) Drosophila melanogaster AT14055 fu...    45   8e-04
AF195793_1(AF195793|pid:none) Drosophila melanogaster clone GH14...    45   8e-04
AE013599_3413(AE013599|pid:none) Drosophila melanogaster chromos...    45   8e-04
AE013599_3414(AE013599|pid:none) Drosophila melanogaster chromos...    45   8e-04
(Q5PR98) RecName: Full=Protein NDRG2;  &BC086746_1(BC086746|pid:...    43   0.004
CR954213_245(CR954213|pid:none) Ostreococcus tauri strain OTTH05...    42   0.005
BT080498_1(BT080498|pid:none) Caligus clemensi clone ccle-evs-51...    40   0.025
AK096562_1(AK096562|pid:none) Homo sapiens cDNA FLJ39243 fis, cl...    40   0.025
AK095649_1(AK095649|pid:none) Homo sapiens cDNA FLJ38330 fis, cl...    39   0.074
AK131248_1(AK131248|pid:none) Homo sapiens cDNA FLJ16174 fis, cl...    39   0.074
BT035507_1(BT035507|pid:none) Zea mays full-length cDNA clone ZM...    37   0.22
AK076514_1(AK076514|pid:none) Mus musculus 0 day neonate head cD...    37   0.28
AK099669_1(AK099669|pid:none) Oryza sativa Japonica Group cDNA c...    35   0.82
GQ227732_1(GQ227732|pid:none) Senecio squalidus ORSF21A (ORSF21A...    35   1.1
AY275137_1(AY275137|pid:none) Ophiostoma novo-ulmi strain WIN(M)...    35   1.1
AK296794_1(AK296794|pid:none) Homo sapiens cDNA FLJ55222 complet...    33   3.1
AC135427_5(AC135427|pid:none) Oryza sativa (japonica cultivar-gr...    33   4.1
DQ136146_8(DQ136146|pid:none) Tomato chlorosis virus isolate AT8...    33   4.1
AF361823_1(AF361823|pid:none) Arabidopsis thaliana AT5g11790/T22...    32   5.3
AY903448_8(AY903448|pid:none) Tomato chlorosis virus segment RNA...    32   6.9
EU284744_8(EU284744|pid:none) Tomato chlorosis virus isolate Gr-...    32   6.9
AY813933_1(AY813933|pid:none) Schistosoma japonicum SJCHGC04190 ...    32   6.9
AY572988_1(AY572988|pid:none) Helianthus annuus SF21C1 protein m...    32   6.9
(O23969) Pollen-specific protein SF21.  &T13993(T13993) &Y09057_...    32   9.1
EU962022_1(EU962022|pid:none) Zea mays clone 239665 pollen-speci...    32   9.1

>(Q55BX3) RecName: Full=NDRG-like protein;
          Length = 326

 Score =  189 bits (479), Expect = 3e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = +1

Query: 202 GSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIISYHDLGLN 381
           GSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIISYHDLGLN
Sbjct: 9   GSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIISYHDLGLN 68

Query: 382 HTTCFSPFFNHPNMNHILPYLNIIHI 459
           HTTCFSPFFNHPNMNHILPYLNIIHI
Sbjct: 69  HTTCFSPFFNHPNMNHILPYLNIIHI 94

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 406,280,456
Number of extensions: 6438294
Number of successful extensions: 14520
Number of sequences better than 10.0: 99
Number of HSP's gapped: 14508
Number of HSP's successfully gapped: 99
Length of query: 153
Length of database: 1,061,185,681
Length adjustment: 115
Effective length of query: 38
Effective length of database: 685,314,161
Effective search space: 26041938118
Effective search space used: 26041938118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.77  gvh: 0.36  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U04169-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0