Contig-U04162-1
Contig ID Contig-U04162-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Contig-U04162-1Q.Seq.d
AACAATTTAAAAAAAAAAAAGAAAAAGATGGGTGTACCAGAAGAGTATCA
ACAAATTCCAATAAACCAACCACAACAACAACCACAACAACAACCACAAC
AACCACAACAACAACAACAACAACAATATCATCCACAACAACCACCACAG
CAACCATCATCATCACCAGTACAACAACTATTAAATCAAAATTATGATGT
AAATTCATATACACCATCAATTGTAAAAACCCAACAATATAAATTAGCCT
ATGAAAAAGGTCATTTCAATTTTATGAATGGTTTTTCAAAAATATACCCA
AACGAATTAAATAATATATTAACACCAAATGAATATAATGATCTTGTAAT
TGAACTTAATGATATATGCCAACAAGATCCAAGAAAATTAATTTTAGCAA
TTGTTATAGGTGTTATCTTAATTATTGTTGTACCATTTTCAATCGTTTTA
TCACTTATTTTAATTCCACTTGCTATACTTTTATTTTATAAAAGAATGGA
TGCCAAAATGCAAAAAGTTATAGAAAAATATAATTGTAGTTTAATTACAC
GTGGTATCTATATTAACATTGCTAAAAGAATTGAAAGAAGAGATGTTTTA
ATTAATTATCCAATTGAATTAGCTTATTCTTTACAACCACAACAACAACC
ACAAGTTCCATTATATGTTCCACAACCATATCCACAACAACAACCACAAC
AACAACAACAACAACCACAAATGATGGTTTTTAGTCAACAACCAATGAAT
AATGCTGTTGTTGGTGATAATATTACCCTTTTAGATAAATATTAATTTAA
TTTATATTAATTTTAATATTAATAATTTTGGTATTAATATTAGTTAATTA
TGTATATGTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 897
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4062286
End point 4063175
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 4
Link to clone list U04162
List of clone(s)

est1=SLH113F,1,458
est2=SSL673E,1,898
est3=VSA727Z,259,892
est4=SSM594Z,312,864
Translated Amino Acid sequence
NNLKKKKKKMGVPEEYQQIPINQPQQQPQQQPQQPQQQQQQQYHPQQPPQQPSSSPVQQL
LNQNYDVNSYTPSIVKTQQYKLAYEKGHFNFMNGFSKIYPNELNNILTPNEYNDLVIELN
DICQQDPRKLILAIVIGVILIIVVPFSIVLSLILIPLAILLFYKRMDAKMQKVIEKYNCS
LITRGIYINIAKRIERRDVLINYPIELAYSLQPQQQPQVPLYVPQPYPQQQPQQQQQQPQ
MMVFSQQPMNNAVVGDNITLLDKY*fnly*f*y**fwy*y*limym**kkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
NNLKKKKKKMGVPEEYQQIPINQPQQQPQQQPQQPQQQQQQQYHPQQPPQQPSSSPVQQL
LNQNYDVNSYTPSIVKTQQYKLAYEKGHFNFMNGFSKIYPNELNNILTPNEYNDLVIELN
DICQQDPRKLILAIVIGVILIIVVPFSIVLSLILIPLAILLFYKRMDAKMQKVIEKYNCS
LITRGIYINIAKRIERRDVLINYPIELAYSLQPQQQPQVPLYVPQPYPQQQPQQQQQQPQ
MMVFSQQPMNNAVVGDNITLLDKY*fnly*f*y**fwy*y*limym**kkkkkkkkkkk


Frame B:
ti*kkkrkrwvyqksinkfq*tnhnnnhnnnhnnhnnnnnnniihnnhhsnhhhhqynny
*ikimm*ihihhql*kpnnin*pmkkvisil*mvfqkytqtn*iiy*hqmnimil*lnlm
iyankiqen*f*qll*vls*lllyhfqsfyhlf*fhllyfyfikewmpkckkl*kniivv
*lhvvsiltllkelkeemf*liiqln*lilynhnnnhkfhymfhnhihnnnhnnnnnnhk
*wflvnnq*imlllviilpf*ininliyinfninnfginis*lcicnkkkkkkkkkkk


Frame C:
qfkkkkekdgctrrvstnsnkptttttttttttttttttttisstttttatiiitsttti
kskl*ckfiytincknpti*isl*krsfqfyewffknipkrik*yintk*i**scn*t**
ymptrskkinfsncyrcylnycctifnrfityfnstcytfil*kngcqnaksyrki*l*f
nytwyly*hc*kn*kkrcfn*lsn*islfftttttttssiicsttisttttttttttttn
dgf*sttne*cccw**yypfr*ili*filililiilvlilvnyvyvikkkkkkkkkkk


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U04162-1 (Contig-U04162-1Q)
/CSM_Contig/Contig-U04162-1Q.Seq.d
(897 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Conti... 973 0.0
Contig-U11904-1 (Contig-U11904-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U11823-1 (Contig-U11823-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U13999-1 (Contig-U13999-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11360-1 (Contig-U11360-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U10908-1 (Contig-U10908-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U10293-1 (Contig-U10293-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U01260-1 (Contig-U01260-1Q) /CSM_Contig/Conti... 32 0.99

>Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Contig-U04162-1Q.Seq.d
Length = 897

Score = 973 bits (491), Expect = 0.0
Identities = 491/491 (100%)
Strand = Plus / Plus


Query: 143 caccacagcaaccatcatcatcaccagtacaacaactattaaatcaaaattatgatgtaa 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caccacagcaaccatcatcatcaccagtacaacaactattaaatcaaaattatgatgtaa 202


Query: 203 attcatatacaccatcaattgtaaaaacccaacaatataaattagcctatgaaaaaggtc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attcatatacaccatcaattgtaaaaacccaacaatataaattagcctatgaaaaaggtc 262


Query: 263 atttcaattttatgaatggtttttcaaaaatatacccaaacgaattaaataatatattaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atttcaattttatgaatggtttttcaaaaatatacccaaacgaattaaataatatattaa 322


Query: 323 caccaaatgaatataatgatcttgtaattgaacttaatgatatatgccaacaagatccaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caccaaatgaatataatgatcttgtaattgaacttaatgatatatgccaacaagatccaa 382


Query: 383 gaaaattaattttagcaattgttataggtgttatcttaattattgttgtaccattttcaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaaattaattttagcaattgttataggtgttatcttaattattgttgtaccattttcaa 442


Query: 443 tcgttttatcacttattttaattccacttgctatacttttattttataaaagaatggatg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcgttttatcacttattttaattccacttgctatacttttattttataaaagaatggatg 502


Query: 503 ccaaaatgcaaaaagttatagaaaaatataattgtagtttaattacacgtggtatctata 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccaaaatgcaaaaagttatagaaaaatataattgtagtttaattacacgtggtatctata 562


Query: 563 ttaacattgctaaaagaattgaaagaagagatgttttaattaattatccaattgaattag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaacattgctaaaagaattgaaagaagagatgttttaattaattatccaattgaattag 622


Query: 623 cttattcttta 633
|||||||||||
Sbjct: 623 cttattcttta 633


Score = 125 bits (63), Expect = 9e-29
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 716 cacaaatgatggtttttagtcaacaaccaatgaataatgctgttgttggtgataatatta 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cacaaatgatggtttttagtcaacaaccaatgaataatgctgttgttggtgataatatta 775


Query: 776 ccc 778
|||
Sbjct: 776 ccc 778


Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus


Query: 27 gatgggtgtaccagaagagtatcaacaaattccaata 63
|||||||||||||||||||||||||||||||||||||
Sbjct: 27 gatgggtgtaccagaagagtatcaacaaattccaata 63


Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 843 gttaattatgtatatgtaat 862
||||||||||||||||||||
Sbjct: 843 gttaattatgtatatgtaat 862


>Contig-U11904-1 (Contig-U11904-1Q) /CSM_Contig/Contig-U11904-1Q.Seq.d
Length = 1700

Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 736 caacaaccaatgaataatg 754
|||||||||||||||||||
Sbjct: 921 caacaaccaatgaataatg 939


Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 736 caacaaccaatgaataatg 754
|||||||||||||||||||
Sbjct: 1077 caacaaccaatgaataatg 1095


Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 736 caacaaccaatgaataatg 754
|||||||||||||||||||
Sbjct: 1110 caacaaccaatgaataatg 1128


Score = 32.2 bits (16), Expect = 0.99
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 739 caaccaatgaataatg 754
||||||||||||||||
Sbjct: 888 caaccaatgaataatg 903


>Contig-U11823-1 (Contig-U11823-1Q) /CSM_Contig/Contig-U11823-1Q.Seq.d
Length = 1169

Score = 36.2 bits (18), Expect = 0.063
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 203 attcatatacaccatcaa 220
||||||||||||||||||
Sbjct: 131 attcatatacaccatcaa 148


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,894
Number of Sequences: 6905
Number of extensions: 16894
Number of successful extensions: 1625
Number of sequences better than 10.0: 174
length of query: 897
length of database: 5,674,871
effective HSP length: 16
effective length of query: 881
effective length of database: 5,564,391
effective search space: 4902228471
effective search space used: 4902228471
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.14
Homology vs DNA
Query= Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Contig-U04162-1Q.Seq.d
(897 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU261689) Dictyostelium discoideum vegetative cDNA clone:VS... 733 0.0 2
(C93136) Dictyostelium discoideum slug cDNA, clone SSM594. 636 0.0 2
(AU061991) Dictyostelium discoideum slug cDNA, clone SLH113. 555 e-159 2
(C93747) Dictyostelium discoideum slug cDNA, clone SSL673. 309 e-103 3
(AU074726) Dictyostelium discoideum slug cDNA, clone SSL673. 123 1e-26 2
(AC148815) Medicago truncatula chromosome 2 clone mth2-13k15... 48 0.025 5
(EU980631) Thermotogales bacterium TBF 19.5.1 clone fosmid t... 34 0.36 2
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 44 0.52 7
(AC180673) Strongylocentrotus purpuratus clone R3-3087I22, W... 48 0.59 1
(AC180357) Strongylocentrotus purpuratus clone R3-3009C17, W... 48 0.59 1
(AC180074) Strongylocentrotus purpuratus clone R3-3001B09, W... 48 0.59 1
(AC179609) Strongylocentrotus purpuratus clone R3-1028L19, W... 48 0.59 1
(AC179261) Strongylocentrotus purpuratus clone R3-42O22, WOR... 48 0.59 1
(AC178079) Strongylocentrotus purpuratus clone R3-3059O13, W... 48 0.59 1
(AC174736) Strongylocentrotus purpuratus clone R3-3088K20, W... 48 0.59 1
(AC172393) Strongylocentrotus purpuratus clone R3-14N15, WOR... 48 0.59 1
(DX914241) gSpTor-266.bT7 Spironucleus Zap GSS Library Spiro... 48 0.59 1
(CE598213) tigr-gss-dog-17000366615429 Dog Library Canis lup... 48 0.59 1
(DW015132) EST1224093 MTY Medicago truncatula cDNA clone MTY... 48 0.59 1
(CK533304) rswgb0_001262.y1 swg Bombyx mori cDNA, mRNA seque... 48 0.59 1
(BF520630) EST458103 DSIL Medicago truncatula cDNA clone pDS... 48 0.59 1
(AC144340) Medicago truncatula clone mth2-7k2, complete sequ... 40 0.66 5
(AM464203) Vitis vinifera contig VV78X011857.6, whole genome... 40 1.1 3
(AB236338) Clostridium perfringens F4013 plasmid pCPF4013 DN... 38 1.1 5
(AC168242) Bos taurus clone CH240-197K5, WORKING DRAFT SEQUE... 34 1.2 2
(AC220135) Bos taurus clone CH240-363O15, WORKING DRAFT SEQU... 34 1.2 2
(AF005497) Bos taurus butyrophilin gene, complete cds. 34 1.4 2
(AF037402) Bos taurus butyrophilin (BTN) gene, partial cds. 34 1.4 2
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 36 1.5 7
(AX344560) Sequence 11 from Patent WO0200932. 36 1.5 8
(AP001890) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 1.5 3
(EU199798) Bubalus bubalis isolate C butyrophilin gene, intr... 34 1.7 2
(EU199797) Bubalus bubalis isolate B butyrophilin gene, intr... 34 1.7 2
(EU194868) Bubalus bubalis butyrophilin variant A gene, intr... 34 1.7 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 38 1.7 14
(AC122152) Oryctolagus cuniculus clone LB1-297M16, complete ... 46 2.3 1
(AC161740) Dasypus novemcinctus clone VMRC5-181L14, WORKING ... 46 2.3 1
(AC156289) Bos taurus clone CH240-56I6, WORKING DRAFT SEQUEN... 46 2.3 1
(AC135873) Rattus norvegicus clone CH230-317O9, *** SEQUENCI... 46 2.3 1
(AC122580) Rattus norvegicus clone CH230-29H2, *** SEQUENCIN... 46 2.3 1
(AC110694) Rattus norvegicus clone CH230-25G12, *** SEQUENCI... 46 2.3 1
(AC233545) Oryza minuta clone OM__Ba0058L16, *** SEQUENCING ... 46 2.3 1
(AC233544) Oryza minuta clone OM__Ba0049L12, *** SEQUENCING ... 46 2.3 1
(AC231823) Oryza minuta clone OM__Ba0043E22, *** SEQUENCING ... 46 2.3 1
(AC217506) Oryza officinalis clone OO__Ba0075A15, *** SEQUEN... 46 2.3 1
(AC208268) Saimiri boliviensis boliviensis clone CH254-327E1... 46 2.3 1
(AC172964) Bos taurus clone CH240-263N3, WORKING DRAFT SEQUE... 46 2.3 1
(DU632140) OO__Ba0140P02.r OO__Ba Oryza officinalis genomic ... 46 2.3 1
(DU597130) OO__Ba0092O24.r OO__Ba Oryza officinalis genomic ... 46 2.3 1
(CZ653103) OM__Ba0202K03.r OM__Ba Oryza minuta genomic clone... 46 2.3 1
(CZ651739) OM__Ba0200N10.r OM__Ba Oryza minuta genomic clone... 46 2.3 1
(CZ639268) OM__Ba0184C01.r OM__Ba Oryza minuta genomic clone... 46 2.3 1
(CZ075840) OM__Ba0071N04.f OM__Ba Oryza minuta genomic clone... 46 2.3 1
(CE788099) tigr-gss-dog-17000330866535 Dog Library Canis lup... 46 2.3 1
(BJ678732) Paralabidochromis chilotes cDNA clone:no56d01. 46 2.3 1
(BJ669639) Paralabidochromis chilotes cDNA clone:no56d01. 46 2.3 1
(AC217727) Solanum tuberosum chromosome 1 clone RH121C15, **... 38 2.6 4
(AX392736) Sequence 26 from Patent WO0212526. 32 3.3 6
(AR707083) Sequence 26 from patent US 6933145. 32 3.3 6
(CR936324) Medicago truncatula chromosome 5 clone mth2-62a22... 38 3.7 6
(AC111323) Rattus norvegicus clone CH230-241O22, WORKING DRA... 34 4.4 2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 36 4.7 9
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 4.8 5
(AM425545) Vitis vinifera contig VV78X074080.4, whole genome... 36 5.6 2
(CX578022) TTE00031496 Amplicon Express - Conjugative Form T... 36 5.8 2
(EX524350) ALF-R-15_2007-07-25_1/ALF(R)-15_I05_012_1 Alfalfa... 34 5.9 2
(EK044528) 1092959542101 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.9 2
(CU560704) Spc_3YI05 cDNA clone of Developmental Stages Libr... 34 5.9 2
(EV826737) TT1EO22TV Tetrahymena thermophila SB210 cDNA libr... 36 6.2 2
(AM453734) Vitis vinifera contig VV78X070956.8, whole genome... 38 6.5 4
(FH864700) OSB_185005xj16f1.ab1 OSB_185 Nicotiana tabacum ge... 40 6.6 2
(AC153349) Medicago truncatula clone mth2-72p9, WORKING DRAF... 38 6.8 3
(FH865030) OSB_185004xj16f1.ab1 OSB_185 Nicotiana tabacum ge... 40 7.1 2
(AC189439) Brassica rapa subsp. pekinensis clone KBrB069G15,... 34 7.6 8
(EA692610) Sequence 71489 from patent US 7365185. 32 8.0 4
(EJ377398) 1092963747307 Global-Ocean-Sampling_GS-28-01-01-1... 32 8.2 3
(AC182676) Populus trichocarpa clone Pop1-29E23, complete se... 34 8.6 5
(BX005260) Zebrafish DNA sequence from clone DKEY-209F7 in l... 44 9.2 1
(AP001093) Homo sapiens genomic DNA, chromosome 11q, clone:R... 44 9.2 1
(AC149104) Papio anubis clone RP41-125J12, WORKING DRAFT SEQ... 44 9.2 1
(AC148213) Dasypus novemcinctus clone VMRC5-438N18, WORKING ... 44 9.2 1
(AC126159) Rattus norvegicus clone CH230-513J13, WORKING DRA... 44 9.2 1
(AC111528) Rattus norvegicus clone CH230-149F4, *** SEQUENCI... 44 9.2 1
(AC108234) Rattus norvegicus clone CH230-152C9, *** SEQUENCI... 44 9.2 1
(CU457780) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.2 1
(AC212958) Chlorocebus aethiops clone CH252-35C16, WORKING D... 44 9.2 1
(AC201507) Strongylocentrotus purpuratus clone R3-3081P21, W... 44 9.2 1
(AC193295) Colobus guereza clone CH272-94O3, WORKING DRAFT S... 44 9.2 1
(AC190891) Zea mays chromosome 2 clone CH201-538B1; ZMMBBc05... 44 9.2 1
(AC190632) Zea mays chromosome 5 clone CH201-259M10; ZMMBBc0... 44 9.2 1
(AC187931) Aotus nancymaae clone CH258-22J5, WORKING DRAFT S... 44 9.2 1
(AC169632) Macaca mulatta clone CH250-104G24, WORKING DRAFT ... 44 9.2 1
(AC011720) Homo sapiens chromosome 11 clone RP11-131N7 map 1... 44 9.2 1
(AC009551) Homo sapiens chromosome 11 clone RP11-401H5 map 1... 44 9.2 1
(AQ680596) HS_5493_A1_H09_T7A RPCI-11 Human Male BAC Library... 44 9.2 1
(ET859333) CHO_OF163xa06f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.2 1
(ER523671) 1093015609136 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1
(ER476695) 1093015241296 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1
(ER441807) 1092963815934 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1
(ER437352) 1092963801608 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1
(EK490718) 1095505081833 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.2 1
(EK455617) 1095468143188 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.2 1
(EK369279) 1095469409993 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.2 1
(EK274990) 1095462273203 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.2 1
(EK185816) 1095458145430 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.2 1
(EJ888902) 1093018432186 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ862023) 1093018206580 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ795509) 1093017398750 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ557914) 1092959518358 Global-Ocean-Sampling_GS-29-01-01-1... 44 9.2 1
(EJ557485) 1092959515670 Global-Ocean-Sampling_GS-29-01-01-1... 44 9.2 1
(EJ464245) 1095388022842 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1
(EJ397088) 1093012008886 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1
(EJ360126) 1092963682777 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1
(EJ344200) 1092963536068 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1
(DU834689) KBrS014P08F KBrS, Brassica rapa Sau3AI BAC librar... 44 9.2 1
(DE851865) Macropus eugenii DNA, BAC clone: MEB1-015F09_R, 3... 44 9.2 1
(DE067783) Oryzias latipes DNA, clone: ola1-164L10.R, genomi... 44 9.2 1
(CC225460) CH261-71F20_RM1.1 CH261 Gallus gallus genomic clo... 44 9.2 1
(BZ487485) BONMZ45TR BO_1.6_2_KB_tot Brassica oleracea genom... 44 9.2 1
(AA550627) 1815m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc... 44 9.2 1
(EC268332) EST02142 Chinese sturgeon pituitary cDNA library ... 44 9.2 1
(CU593645) Theobroma cacao, mRNA sequence (KZ0AAH7YG16FM1). 44 9.2 1
(CU569292) Theobroma cacao, mRNA sequence (KZ0ACAD7YI09FM1). 44 9.2 1
(CU484979) Theobroma cacao, mRNA sequence (KZ0ACAC2YM19FM1). 44 9.2 1
(EY861514) CM30-C1-401-035-C04-CT.F Sweet lime leaf, infecte... 44 9.2 1
(EY861239) CM30-C1-401-037-B03-CT.F Sweet lime leaf, infecte... 44 9.2 1
(CP000025) Campylobacter jejuni RM1221, complete genome. 44 9.2 1
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 44 9.2 1
(CP000983) Borrelia duttonii Ly plasmid pl27, complete seque... 36 9.5 4

>(AU261689) Dictyostelium discoideum vegetative cDNA clone:VSA727,
3' end single read.
Length = 634

Score = 733 bits (370), Expect(2) = 0.0
Identities = 373/374 (99%)
Strand = Plus / Plus


Query: 259 ggtcatttcaattttatgaatggtttttcaaaaatatacccaaacgaattaaataatata 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatttcaattttatgaatggtttttcaaaaatatacccaaacgaattaaataatata 60


Query: 319 ttaacaccaaatgaatataatgatcttgtaattgaacttaatgatatatgccaacaagat 378
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgacaccaaatgaatataatgatcttgtaattgaacttaatgatatatgccaacaagat 120


Query: 379 ccaagaaaattaattttagcaattgttataggtgttatcttaattattgttgtaccattt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaagaaaattaattttagcaattgttataggtgttatcttaattattgttgtaccattt 180


Query: 439 tcaatcgttttatcacttattttaattccacttgctatacttttattttataaaagaatg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaatcgttttatcacttattttaattccacttgctatacttttattttataaaagaatg 240


Query: 499 gatgccaaaatgcaaaaagttatagaaaaatataattgtagtttaattacacgtggtatc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatgccaaaatgcaaaaagttatagaaaaatataattgtagtttaattacacgtggtatc 300


Query: 559 tatattaacattgctaaaagaattgaaagaagagatgttttaattaattatccaattgaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatattaacattgctaaaagaattgaaagaagagatgttttaattaattatccaattgaa 360


Query: 619 ttagcttattcttt 632
||||||||||||||
Sbjct: 361 ttagcttattcttt 374

Score = 91.7 bits (46), Expect(2) = 0.0
Identities = 46/46 (100%)
Strand = Plus / Plus


Query: 721 atgatggtttttagtcaacaaccaatgaataatgctgttgttggtg 766
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atgatggtttttagtcaacaaccaatgaataatgctgttgttggtg 508

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 812,849,857
Number of extensions: 56009593
Number of successful extensions: 4601007
Number of sequences better than 10.0: 131
Length of query: 897
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 873
Effective length of database: 99,340,224,878
Effective search space: 86724016318494
Effective search space used: 86724016318494
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Contig-U04162-1Q.Seq.d
(897 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 770,792,078
Number of extensions: 9794655
Number of successful extensions: 24906
Number of sequences better than 10.0: 0
Number of HSP's gapped: 24899
Number of HSP's successfully gapped: 0
Length of query: 299
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 171
Effective length of database: 642,824,337
Effective search space: 109922961627
Effective search space used: 109922961627
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.61 gvh: 0.18 alm: 0.07 top: 0.80 tms: 0.13 mit: 0.16 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: plasma membrane
16.0 %: nuclear
16.0 %: vacuolar
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for Contig-U04162-1 is end

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0