Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Contig-U04162-1Q.Seq.d (897 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU261689) Dictyostelium discoideum vegetative cDNA clone:VS... 733 0.0 2 (C93136) Dictyostelium discoideum slug cDNA, clone SSM594. 636 0.0 2 (AU061991) Dictyostelium discoideum slug cDNA, clone SLH113. 555 e-159 2 (C93747) Dictyostelium discoideum slug cDNA, clone SSL673. 309 e-103 3 (AU074726) Dictyostelium discoideum slug cDNA, clone SSL673. 123 1e-26 2 (AC148815) Medicago truncatula chromosome 2 clone mth2-13k15... 48 0.025 5 (EU980631) Thermotogales bacterium TBF 19.5.1 clone fosmid t... 34 0.36 2 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 44 0.52 7 (AC180673) Strongylocentrotus purpuratus clone R3-3087I22, W... 48 0.59 1 (AC180357) Strongylocentrotus purpuratus clone R3-3009C17, W... 48 0.59 1 (AC180074) Strongylocentrotus purpuratus clone R3-3001B09, W... 48 0.59 1 (AC179609) Strongylocentrotus purpuratus clone R3-1028L19, W... 48 0.59 1 (AC179261) Strongylocentrotus purpuratus clone R3-42O22, WOR... 48 0.59 1 (AC178079) Strongylocentrotus purpuratus clone R3-3059O13, W... 48 0.59 1 (AC174736) Strongylocentrotus purpuratus clone R3-3088K20, W... 48 0.59 1 (AC172393) Strongylocentrotus purpuratus clone R3-14N15, WOR... 48 0.59 1 (DX914241) gSpTor-266.bT7 Spironucleus Zap GSS Library Spiro... 48 0.59 1 (CE598213) tigr-gss-dog-17000366615429 Dog Library Canis lup... 48 0.59 1 (DW015132) EST1224093 MTY Medicago truncatula cDNA clone MTY... 48 0.59 1 (CK533304) rswgb0_001262.y1 swg Bombyx mori cDNA, mRNA seque... 48 0.59 1 (BF520630) EST458103 DSIL Medicago truncatula cDNA clone pDS... 48 0.59 1 (AC144340) Medicago truncatula clone mth2-7k2, complete sequ... 40 0.66 5 (AM464203) Vitis vinifera contig VV78X011857.6, whole genome... 40 1.1 3 (AB236338) Clostridium perfringens F4013 plasmid pCPF4013 DN... 38 1.1 5 (AC168242) Bos taurus clone CH240-197K5, WORKING DRAFT SEQUE... 34 1.2 2 (AC220135) Bos taurus clone CH240-363O15, WORKING DRAFT SEQU... 34 1.2 2 (AF005497) Bos taurus butyrophilin gene, complete cds. 34 1.4 2 (AF037402) Bos taurus butyrophilin (BTN) gene, partial cds. 34 1.4 2 (AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 36 1.5 7 (AX344560) Sequence 11 from Patent WO0200932. 36 1.5 8 (AP001890) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 1.5 3 (EU199798) Bubalus bubalis isolate C butyrophilin gene, intr... 34 1.7 2 (EU199797) Bubalus bubalis isolate B butyrophilin gene, intr... 34 1.7 2 (EU194868) Bubalus bubalis butyrophilin variant A gene, intr... 34 1.7 2 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 38 1.7 14 (AC122152) Oryctolagus cuniculus clone LB1-297M16, complete ... 46 2.3 1 (AC161740) Dasypus novemcinctus clone VMRC5-181L14, WORKING ... 46 2.3 1 (AC156289) Bos taurus clone CH240-56I6, WORKING DRAFT SEQUEN... 46 2.3 1 (AC135873) Rattus norvegicus clone CH230-317O9, *** SEQUENCI... 46 2.3 1 (AC122580) Rattus norvegicus clone CH230-29H2, *** SEQUENCIN... 46 2.3 1 (AC110694) Rattus norvegicus clone CH230-25G12, *** SEQUENCI... 46 2.3 1 (AC233545) Oryza minuta clone OM__Ba0058L16, *** SEQUENCING ... 46 2.3 1 (AC233544) Oryza minuta clone OM__Ba0049L12, *** SEQUENCING ... 46 2.3 1 (AC231823) Oryza minuta clone OM__Ba0043E22, *** SEQUENCING ... 46 2.3 1 (AC217506) Oryza officinalis clone OO__Ba0075A15, *** SEQUEN... 46 2.3 1 (AC208268) Saimiri boliviensis boliviensis clone CH254-327E1... 46 2.3 1 (AC172964) Bos taurus clone CH240-263N3, WORKING DRAFT SEQUE... 46 2.3 1 (DU632140) OO__Ba0140P02.r OO__Ba Oryza officinalis genomic ... 46 2.3 1 (DU597130) OO__Ba0092O24.r OO__Ba Oryza officinalis genomic ... 46 2.3 1 (CZ653103) OM__Ba0202K03.r OM__Ba Oryza minuta genomic clone... 46 2.3 1 (CZ651739) OM__Ba0200N10.r OM__Ba Oryza minuta genomic clone... 46 2.3 1 (CZ639268) OM__Ba0184C01.r OM__Ba Oryza minuta genomic clone... 46 2.3 1 (CZ075840) OM__Ba0071N04.f OM__Ba Oryza minuta genomic clone... 46 2.3 1 (CE788099) tigr-gss-dog-17000330866535 Dog Library Canis lup... 46 2.3 1 (BJ678732) Paralabidochromis chilotes cDNA clone:no56d01. 46 2.3 1 (BJ669639) Paralabidochromis chilotes cDNA clone:no56d01. 46 2.3 1 (AC217727) Solanum tuberosum chromosome 1 clone RH121C15, **... 38 2.6 4 (AX392736) Sequence 26 from Patent WO0212526. 32 3.3 6 (AR707083) Sequence 26 from patent US 6933145. 32 3.3 6 (CR936324) Medicago truncatula chromosome 5 clone mth2-62a22... 38 3.7 6 (AC111323) Rattus norvegicus clone CH230-241O22, WORKING DRA... 34 4.4 2 (AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 36 4.7 9 (AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 4.8 5 (AM425545) Vitis vinifera contig VV78X074080.4, whole genome... 36 5.6 2 (CX578022) TTE00031496 Amplicon Express - Conjugative Form T... 36 5.8 2 (EX524350) ALF-R-15_2007-07-25_1/ALF(R)-15_I05_012_1 Alfalfa... 34 5.9 2 (EK044528) 1092959542101 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.9 2 (CU560704) Spc_3YI05 cDNA clone of Developmental Stages Libr... 34 5.9 2 (EV826737) TT1EO22TV Tetrahymena thermophila SB210 cDNA libr... 36 6.2 2 (AM453734) Vitis vinifera contig VV78X070956.8, whole genome... 38 6.5 4 (FH864700) OSB_185005xj16f1.ab1 OSB_185 Nicotiana tabacum ge... 40 6.6 2 (AC153349) Medicago truncatula clone mth2-72p9, WORKING DRAF... 38 6.8 3 (FH865030) OSB_185004xj16f1.ab1 OSB_185 Nicotiana tabacum ge... 40 7.1 2 (AC189439) Brassica rapa subsp. pekinensis clone KBrB069G15,... 34 7.6 8 (EA692610) Sequence 71489 from patent US 7365185. 32 8.0 4 (EJ377398) 1092963747307 Global-Ocean-Sampling_GS-28-01-01-1... 32 8.2 3 (AC182676) Populus trichocarpa clone Pop1-29E23, complete se... 34 8.6 5 (BX005260) Zebrafish DNA sequence from clone DKEY-209F7 in l... 44 9.2 1 (AP001093) Homo sapiens genomic DNA, chromosome 11q, clone:R... 44 9.2 1 (AC149104) Papio anubis clone RP41-125J12, WORKING DRAFT SEQ... 44 9.2 1 (AC148213) Dasypus novemcinctus clone VMRC5-438N18, WORKING ... 44 9.2 1 (AC126159) Rattus norvegicus clone CH230-513J13, WORKING DRA... 44 9.2 1 (AC111528) Rattus norvegicus clone CH230-149F4, *** SEQUENCI... 44 9.2 1 (AC108234) Rattus norvegicus clone CH230-152C9, *** SEQUENCI... 44 9.2 1 (CU457780) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.2 1 (AC212958) Chlorocebus aethiops clone CH252-35C16, WORKING D... 44 9.2 1 (AC201507) Strongylocentrotus purpuratus clone R3-3081P21, W... 44 9.2 1 (AC193295) Colobus guereza clone CH272-94O3, WORKING DRAFT S... 44 9.2 1 (AC190891) Zea mays chromosome 2 clone CH201-538B1; ZMMBBc05... 44 9.2 1 (AC190632) Zea mays chromosome 5 clone CH201-259M10; ZMMBBc0... 44 9.2 1 (AC187931) Aotus nancymaae clone CH258-22J5, WORKING DRAFT S... 44 9.2 1 (AC169632) Macaca mulatta clone CH250-104G24, WORKING DRAFT ... 44 9.2 1 (AC011720) Homo sapiens chromosome 11 clone RP11-131N7 map 1... 44 9.2 1 (AC009551) Homo sapiens chromosome 11 clone RP11-401H5 map 1... 44 9.2 1 (AQ680596) HS_5493_A1_H09_T7A RPCI-11 Human Male BAC Library... 44 9.2 1 (ET859333) CHO_OF163xa06f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.2 1 (ER523671) 1093015609136 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1 (ER476695) 1093015241296 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1 (ER441807) 1092963815934 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1 (ER437352) 1092963801608 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.2 1 (EK490718) 1095505081833 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.2 1 (EK455617) 1095468143188 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.2 1 (EK369279) 1095469409993 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.2 1 (EK274990) 1095462273203 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.2 1 (EK185816) 1095458145430 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.2 1 (EJ888902) 1093018432186 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ862023) 1093018206580 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ795509) 1093017398750 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ557914) 1092959518358 Global-Ocean-Sampling_GS-29-01-01-1... 44 9.2 1 (EJ557485) 1092959515670 Global-Ocean-Sampling_GS-29-01-01-1... 44 9.2 1 (EJ464245) 1095388022842 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1 (EJ397088) 1093012008886 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1 (EJ360126) 1092963682777 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1 (EJ344200) 1092963536068 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.2 1 (DU834689) KBrS014P08F KBrS, Brassica rapa Sau3AI BAC librar... 44 9.2 1 (DE851865) Macropus eugenii DNA, BAC clone: MEB1-015F09_R, 3... 44 9.2 1 (DE067783) Oryzias latipes DNA, clone: ola1-164L10.R, genomi... 44 9.2 1 (CC225460) CH261-71F20_RM1.1 CH261 Gallus gallus genomic clo... 44 9.2 1 (BZ487485) BONMZ45TR BO_1.6_2_KB_tot Brassica oleracea genom... 44 9.2 1 (AA550627) 1815m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc... 44 9.2 1 (EC268332) EST02142 Chinese sturgeon pituitary cDNA library ... 44 9.2 1 (CU593645) Theobroma cacao, mRNA sequence (KZ0AAH7YG16FM1). 44 9.2 1 (CU569292) Theobroma cacao, mRNA sequence (KZ0ACAD7YI09FM1). 44 9.2 1 (CU484979) Theobroma cacao, mRNA sequence (KZ0ACAC2YM19FM1). 44 9.2 1 (EY861514) CM30-C1-401-035-C04-CT.F Sweet lime leaf, infecte... 44 9.2 1 (EY861239) CM30-C1-401-037-B03-CT.F Sweet lime leaf, infecte... 44 9.2 1 (CP000025) Campylobacter jejuni RM1221, complete genome. 44 9.2 1 (AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 44 9.2 1 (CP000983) Borrelia duttonii Ly plasmid pl27, complete seque... 36 9.5 4
>(AU261689) Dictyostelium discoideum vegetative cDNA clone:VSA727, 3' end single read. Length = 634
Score = 733 bits (370), Expect(2) = 0.0 Identities = 373/374 (99%) Strand = Plus / Plus
Query: 259 ggtcatttcaattttatgaatggtttttcaaaaatatacccaaacgaattaaataatata 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggtcatttcaattttatgaatggtttttcaaaaatatacccaaacgaattaaataatata 60
Query: 319 ttaacaccaaatgaatataatgatcttgtaattgaacttaatgatatatgccaacaagat 378 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttgacaccaaatgaatataatgatcttgtaattgaacttaatgatatatgccaacaagat 120
Query: 379 ccaagaaaattaattttagcaattgttataggtgttatcttaattattgttgtaccattt 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccaagaaaattaattttagcaattgttataggtgttatcttaattattgttgtaccattt 180
Query: 439 tcaatcgttttatcacttattttaattccacttgctatacttttattttataaaagaatg 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tcaatcgttttatcacttattttaattccacttgctatacttttattttataaaagaatg 240
Query: 499 gatgccaaaatgcaaaaagttatagaaaaatataattgtagtttaattacacgtggtatc 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gatgccaaaatgcaaaaagttatagaaaaatataattgtagtttaattacacgtggtatc 300
Query: 559 tatattaacattgctaaaagaattgaaagaagagatgttttaattaattatccaattgaa 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tatattaacattgctaaaagaattgaaagaagagatgttttaattaattatccaattgaa 360
Query: 619 ttagcttattcttt 632 |||||||||||||| Sbjct: 361 ttagcttattcttt 374
Score = 91.7 bits (46), Expect(2) = 0.0 Identities = 46/46 (100%) Strand = Plus / Plus
Query: 721 atgatggtttttagtcaacaaccaatgaataatgctgttgttggtg 766 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 atgatggtttttagtcaacaaccaatgaataatgctgttgttggtg 508
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 812,849,857 Number of extensions: 56009593 Number of successful extensions: 4601007 Number of sequences better than 10.0: 131 Length of query: 897 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 873 Effective length of database: 99,340,224,878 Effective search space: 86724016318494 Effective search space used: 86724016318494 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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