Contig-U04147-1
Contig ID Contig-U04147-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04147-1 (Contig-U04147-1Q) /CSM_Contig/Contig-U04147-1Q.Seq.d
GATGAAGATGAGGATGAAGATGAAGAAGGCGATGAAGATGATGATTTTGT
AGATGATGGCGATGAAGAAGATGATGAAAGAAATGGTAGTGTTGCACATT
TAAATGGTAAATCATCTGTAAAAAGTACTCATGCAAATCATAAATACGAT
AAAGAAGAAGAAGAAGAGGAAGAAGAAGATGGTGAATCTGAAGGAGAATC
TGAAGAAGAAAAGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTT
G

Gap no gap
Contig length 251
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4029375
End point 4029586
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04147
List of clone(s)

est1=SLG638Z,1,252
Translated Amino Acid sequence
DEDEDEDEEGDEDDDFVDDGDEEDDERNGSVAHLNGKSSVKSTHANHKYDKEEEEEEEED
GESEGESEEEKGIL*srpagmqa


Translated Amino Acid sequence (All Frames)
Frame A:
DEDEDEDEEGDEDDDFVDDGDEEDDERNGSVAHLNGKSSVKSTHANHKYDKEEEEEEEED
GESEGESEEEKGIL*srpagmqa


Frame B:
mkmrmkmkkamkmmil*mmamkkmmkemvvlhi*mvnhl*kvlmqiintikkkkkrkkkm
vnlkenlkkkrgssrvdlqackl


Frame C:
*r*g*r*rrr*r**fcr*wr*rr**kkw*cctfkw*iickkyscks*ir*rrrrrgrrrw
*i*rri*rrkgdplestcrhasl


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U04147-1 (Contig-U04147-1Q)
/CSM_Contig/Contig-U04147-1Q.Seq.d
(251 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04147-1 (Contig-U04147-1Q) /CSM_Contig/Conti... 131 4e-31
Contig-U14504-1 (Contig-U14504-1Q) /CSM_Contig/Conti... 76 2e-14
Contig-U04200-1 (Contig-U04200-1Q) /CSM_Contig/Conti... 76 2e-14
Contig-U10187-1 (Contig-U10187-1Q) /CSM_Contig/Conti... 50 1e-06
Contig-U04293-1 (Contig-U04293-1Q) /CSM_Contig/Conti... 44 7e-05
Contig-U09253-1 (Contig-U09253-1Q) /CSM_Contig/Conti... 36 0.017
Contig-U12656-1 (Contig-U12656-1Q) /CSM_Contig/Conti... 32 0.26
Contig-U11822-1 (Contig-U11822-1Q) /CSM_Contig/Conti... 32 0.26
Contig-U14745-1 (Contig-U14745-1Q) /CSM_Contig/Conti... 30 1.0
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti... 30 1.0

>Contig-U04147-1 (Contig-U04147-1Q) /CSM_Contig/Contig-U04147-1Q.Seq.d
Length = 251

Score = 131 bits (66), Expect = 4e-31
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 86 gtagtgttgcacatttaaatggtaaatcatctgtaaaaagtactcatgcaaatcataaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gtagtgttgcacatttaaatggtaaatcatctgtaaaaagtactcatgcaaatcataaat 145


Query: 146 acgata 151
||||||
Sbjct: 146 acgata 151


Score = 75.8 bits (38), Expect = 2e-14
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 214 gggatcctctagagtcgacctgcaggcatgcaagcttg 251
||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gggatcctctagagtcgacctgcaggcatgcaagcttg 251


>Contig-U14504-1 (Contig-U14504-1Q) /CSM_Contig/Contig-U14504-1Q.Seq.d
Length = 588

Score = 75.8 bits (38), Expect = 2e-14
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 214 gggatcctctagagtcgacctgcaggcatgcaagcttg 251
||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gggatcctctagagtcgacctgcaggcatgcaagcttg 588


>Contig-U04200-1 (Contig-U04200-1Q) /CSM_Contig/Contig-U04200-1Q.Seq.d
Length = 559

Score = 75.8 bits (38), Expect = 2e-14
Identities = 38/38 (100%)
Strand = Plus / Minus


Query: 214 gggatcctctagagtcgacctgcaggcatgcaagcttg 251
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 gggatcctctagagtcgacctgcaggcatgcaagcttg 1


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 676
Number of Sequences: 6905
Number of extensions: 676
Number of successful extensions: 226
Number of sequences better than 10.0: 29
length of query: 251
length of database: 5,674,871
effective HSP length: 15
effective length of query: 236
effective length of database: 5,571,296
effective search space: 1314825856
effective search space used: 1314825856
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.14
Homology vs DNA
Query= Contig-U04147-1 (Contig-U04147-1Q) /CSM_Contig/Contig-U04147-1Q.Seq.d
(251 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU061926) Dictyostelium discoideum slug cDNA, clone SLG638. 131 1e-42 2
(A22741) L.esculentum nematode-responsive cDNA LEMMI 11. 76 4e-12 2
(CG752569) P047-2-D12.ya Ppa EcoRI BAC Library Pristionchus ... 76 3e-11 2
(CG746377) P039-3-D09.ya Ppa EcoRI BAC Library Pristionchus ... 76 3e-11 2
(CG748807) P042-4-C10.ya Ppa EcoRI BAC Library Pristionchus ... 76 3e-11 2
(CG745085) P037-4-E10.ya Ppa EcoRI BAC Library Pristionchus ... 76 3e-11 2
(BZ773683) mcv77d09.g1 HFOSMID007 Homo sapiens genomic, geno... 76 7e-11 2
(BZ771515) mct77c09.g6 HFOSMID004 Homo sapiens genomic, geno... 76 9e-11 2
(CG745181) P038-1-B01.ya Ppa EcoRI BAC Library Pristionchus ... 76 1e-10 2
(CG746198) P039-2-E02.ya Ppa EcoRI BAC Library Pristionchus ... 76 1e-10 2
(CG754031) P049-2-D02.ya Ppa EcoRI BAC Library Pristionchus ... 76 1e-10 2
(CG746585) P039-4-E05.ya Ppa EcoRI BAC Library Pristionchus ... 76 1e-10 2
(CG744984) P037-4-A06.ya Ppa EcoRI BAC Library Pristionchus ... 76 1e-10 2
(AQ206958) HS_3238_B1_F07_MR CIT Approved Human Genomic Sper... 76 2e-10 2
(AQ142316) HS_3056_A1_E09_MR CIT Approved Human Genomic Sper... 76 2e-10 2
(DI060053) Novel D-stereo specific amino acid amidase, gene ... 76 2e-10 2
(AQ309785) CITBI-E1-2526I23.TR CITBI-E1 Homo sapiens genomic... 76 2e-10 2
(AC184208) Strongylocentrotus purpuratus clone R3-31F18, WOR... 76 2e-10 2
(CZ269077) bes05_VM7_293G11_pCC1BACpEpiFOSrev_CD705_085 VMRC... 76 3e-10 2
(CZ269439) bes12_VM7_387P23_pCC1BACpEpiFOSrev_CD1137_095 VMR... 76 3e-10 2
(CZ268446) bes09_VM5_332I12_M13R_CD811_094 VMRC-5 Armadillo ... 76 3e-10 2
(AQ863278) nbeb0020N01r CUGI Rice BAC Library (EcoRI) Oryza ... 76 3e-10 2
(CL866710) 445157_VM22-1A11_M13R VMRC-22 Dolphin BAC Library... 76 3e-10 2
(DQ483056) Integration vector pBGSC6, complete sequence. 76 3e-10 2
(CG745941) P039-1-B02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG756874) P051-4-H12.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG752305) P047-1-A07.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG747798) P041-3-A01.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG746599) P039-4-F01.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG745680) P038-3-G02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG753684) P048-4-E02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG752993) P047-4-G02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG748722) P042-3-H02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG754762) P050-2-C01.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG749153) P043-2-B10.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG757271) P052-3-A12.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG748218) P042-1-B11.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG754064) P049-2-E07.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG751209) P045-3-G07.yb Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(AY618352) Cloning vector pVZ-CAM.fa, complete sequence. 74 4e-10 2
(CG743687) P036-1-B06.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG755607) P051-1-F09.yb Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG747832) P041-3-B06.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG749079) P043-1-G07.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG748270) P042-1-E02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG755831) P051-2-B11.yb Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG750750) P045-2-B06.yb Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(AB042426) Shuttle vector pSET1 DNA, complete sequence. 76 4e-10 2
(CG753645) P048-4-C06.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG744952) P037-3-H02.ya Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG756691) P051-4-E01.yb Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG757904) P053-1-H10.yb Ppa EcoRI BAC Library Pristionchus ... 76 4e-10 2
(CG756715) P051-4-E07.yb Ppa EcoRI BAC Library Pristionchus ... 76 5e-10 2
(CG749725) P044-1-C02.ya Ppa EcoRI BAC Library Pristionchus ... 76 5e-10 2
(CG746700) P040-1-B04.ya Ppa EcoRI BAC Library Pristionchus ... 76 5e-10 2
(CG745105) P037-4-F08.ya Ppa EcoRI BAC Library Pristionchus ... 76 5e-10 2
(CG757692) P053-1-B10.yb Ppa EcoRI BAC Library Pristionchus ... 76 5e-10 2
(CG748274) P042-1-E04.ya Ppa EcoRI BAC Library Pristionchus ... 76 5e-10 2
(AB042431) Shuttle vector pSET3 DNA, complete sequence. 76 5e-10 2
(BD493777) New plasmid, shuttle vector containing the same. 76 6e-10 2
(AQ150405) HS_3204_A1_H06_MR CIT Approved Human Genomic Sper... 74 6e-10 2
(X72218) G.domesticus retinoblastoma mRNA. 76 7e-10 1
(S70644) {avian myeloblastosis virus core-bound 7 S DNA, clo... 76 7e-10 1
(AB232918) Oryzias latipes hox gene cluster, complete cds. 76 7e-10 1
(Y14438) Cloning vector pBHRK18. 76 7e-10 1
(Y14437) Cloning vector pBHRK19. 76 7e-10 1
(Y10544) Cloning vector pKIL194T. 76 7e-10 1
(Y10543) Cloning vector pKIL194. 76 7e-10 1
(X81838) E.coli DNA for pBAD18 cloning vector. 76 7e-10 1
(X81837) E.coli DNA for pBAD24 cloning vector. 76 7e-10 1
(X77672) Artificial DNA sequence for plant transformation ve... 76 7e-10 1
(X75463) Saccharomyces cerevisiae/E. coli shuttle vector, YI... 76 7e-10 1
(X75462) Saccharomyces cerevisiae/E. coli shuttle vector, YI... 76 7e-10 1
(X75461) Saccharomyces cerevisiae/E. coli shuttle vector, YI... 76 7e-10 1
(X75460) Saccharomyces cerevisiae/E. coli shuttle vector, YE... 76 7e-10 1
(X75459) Saccharomyces cerevisiae/E. coli shuttle vector, YE... 76 7e-10 1
(X75458) Saccharomyces cerevisiae/E. coli shuttle vector, YE... 76 7e-10 1
(X75457) Saccharomyces cerevisiae/E. coli shuttle vector, YC... 76 7e-10 1
(X75456) Saccharomyces cerevisiae/E. coli shuttle vector, YC... 76 7e-10 1
(X75455) Saccharomyces cerevisiae/E. coli shuttle vector, YC... 76 7e-10 1
(X70484) multicopy Saccharomyces cerevisiae/E. coli shuttle ... 76 7e-10 1
(X70483) replicative centromeric Saccharomyces cerevisiae/E.... 76 7e-10 1
(X70482) replicative centromeric Saccharomyces cerevisiae/E.... 76 7e-10 1
(X70481) replicative centromeric Saccharomyces cerevisiae/E.... 76 7e-10 1
(X70480) Integrative Saccharomyces cerevisiae/E. coli shuttl... 76 7e-10 1
(X70479) Integrative Saccharomyces cerevisiae/E. coli shuttl... 76 7e-10 1
(X70477) Integrative Saccharomyces cerevisiae/E. coli shuttl... 76 7e-10 1
(X70275) pUC18 and phage f1 derivative cloning vector. 76 7e-10 1
(X70274) single strand multicopy Saccharomyces cerevisiae/E.... 76 7e-10 1
(X70273) single strand multicopy Saccharomyces cerevisiae/E.... 76 7e-10 1
(X70272) single stranded replicative centromeric Saccharomyc... 76 7e-10 1
(X70271) single stranded replicative centromeric Saccharomyc... 76 7e-10 1
(X70270) multicopy Saccharomyces cerevisiae/E. coli shuttle ... 76 7e-10 1
(X70269) multicopy Saccharomyces cerevisiae/E. coli shuttle ... 76 7e-10 1
(X70268) multicopy Saccharomyces cerevisiae/E. coli shuttle ... 76 7e-10 1
(X70267) multicopy Saccharomyces cerevisiae/E. coli shuttle ... 76 7e-10 1
(X70266) multicopy Saccharomyces cerevisiae/E. coli shuttle ... 76 7e-10 1
(X65334) Cloning vector pALTER(R)-1. 76 7e-10 1
(X65307) Cloning vector pGEM-3Zf(-). 76 7e-10 1
(X65306) Cloning vector pGEM-3Zf(+). 76 7e-10 1
(X65305) Cloning vector pGEM-4Z. 76 7e-10 1
(X65304) Cloning vector pGEM-3Z. 76 7e-10 1
(X65302) Cloning vector pGEM-3. 76 7e-10 1
(X53937) Plasmid vector pSU 23. 76 7e-10 1
(X53124) Cloning vector pAST 19b for C. elegans. 76 7e-10 1
(X53123) Cloning vector pAST 19a for C. elegans. 76 7e-10 1
(X53122) Cloning vector pAST 18b for C. elegans. 76 7e-10 1
(X53121) Cloning vector pAST 18a for C. elegans. 76 7e-10 1
(X13070) Cloning vector pT7E19(+) polylinker DNA (pUC19 deri... 76 7e-10 1
(X05046) Cloning vector pGEM3 (pJMSP-0) polylinker sequence ... 76 7e-10 1
(X02513) Cloning vector M13mp18. 76 7e-10 1
(U93512) Cloning vector CA1, complete sequence. 76 7e-10 1
(U90555) Shuttle vector pJIR1457, complete sequence. 76 7e-10 1
(U90554) Shuttle vector pJIR1456, complete sequence. 76 7e-10 1
(U76561) Cloning vector pEGFP, complete sequence. 76 7e-10 1
(U75325) Cloning vector pJB321, complete sequence. 76 7e-10 1
(U75324) Cloning vector pJB3Tc20, complete sequence. 76 7e-10 1
(U75323) Cloning vector pJB3Km1, complete sequence. 76 7e-10 1
(U75322) Cloning vector pJB3Cm6, complete sequence. 76 7e-10 1
(U73899) Cloning vector pJB3, complete sequence. 76 7e-10 1
(U67091) Expression vector pNEX3 beta-lactamase gene, comple... 76 7e-10 1
(U67090) Expression vector pNEX2 beta-lactamase, complete cds. 76 7e-10 1
(U62637) Cloning vector pBAD-GFPuv, complete sequence. 76 7e-10 1
(U62636) Cloning vector pGFPuv, complete sequence. 76 7e-10 1
(U56997) Cloning vector pGreen A19 complete sequence. 76 7e-10 1
(U56996) Cloning vector pGreen A18 complete sequence. 76 7e-10 1
(U51722) Expression vector pNEX delta, complete sequence. 76 7e-10 1
(U51721) Expression vector pNEX, complete sequence. 76 7e-10 1
(U51113) Cloning vector pBeloBAC11. 76 7e-10 1
(U47949) Cloning vector pGreen 19 complete sequence, includi... 76 7e-10 1
(U47948) Cloning vector pGreen 18, complete sequence, includ... 76 7e-10 1
(U39286) Cloning vector TLF97-3, phage lambda lacZ translati... 76 7e-10 1
(U39285) Cloning vector TLF97-2, phage lambda lacZ translati... 76 7e-10 1
(U34321) E.coli/Kluyveromyces lactis shuttle vector pCXJ24. 76 7e-10 1
(U34320) E.coli/Kluyveromyces lactis shuttle vector pCXJ23. 76 7e-10 1
(U34319) E.coli/Kluyveromyces lactis shuttle vector pCXJ22. 76 7e-10 1
(U34318) E.coli/Kluyveromyces lactis shuttle vector pCXJ6. 76 7e-10 1
(U34317) E.coli/Kluyveromyces lactis shuttle vector pCXJ5. 76 7e-10 1
(U34316) E.coli/Kluyveromyces lactis shuttle vector pCXJ3. 76 7e-10 1
(U34315) E.coli/Kluyveromyces lactis shuttle vector pCXJ12. 76 7e-10 1
(U34314) E.coli/Kluyveromyces lactis shuttle vector pCXJ10. 76 7e-10 1
(U34313) E.coli/Kluyveromyces lactis shuttle vector pCXJ20. 76 7e-10 1
(U34312) Kluyveromyces lactis shuttle vector pCXJ19. 76 7e-10 1
(U34311) E.coli/Kluyveromyces lactis shuttle vector pCXJ18. 76 7e-10 1
(U34310) Shuttle vector pCXJ11. 76 7e-10 1
(U33752) Cloning vector pUCP30T, complete sequence. 76 7e-10 1
(U33751) Cloning vector pUCP28T, complete sequence. 76 7e-10 1
(U33750) Cloning vector pUCP20T, complete sequence. 76 7e-10 1
(U32311) Cloning vector pOTSf1Blu, complete sequence. 76 7e-10 1
(U30830) Cloning vector pFD288 beta-galactosidase (lacZ') ge... 76 7e-10 1
(U28790) Cloning vector YEp356 (Yeast episomal plasmid YEp35... 76 7e-10 1
(U17997) Cloning vector pGFP, complete sequence. 76 7e-10 1
(U17502) Cloning vector pX1918GT, complete cds. 76 7e-10 1
(U17501) Cloning vector pX1918G, complete sequence. 76 7e-10 1
(U14127) Cloning vector pSG925, HIS4-based plasmid, complete... 76 7e-10 1
(U13872) pTrc99a cloning vector, complete sequence. 76 7e-10 1
(U12668) GUS gene fusion vector pBI101.2 T-DNA region. 76 7e-10 1
(U12640) GUS gene fusion vector pBI101.3 T-DNA region. 76 7e-10 1
(U12639) GUS gene fusion vector pBI101 T-DNA region. 76 7e-10 1
(U12540) Plant transformation vector pBin19 T-DNA region. 76 7e-10 1
(U10491) Binary cloning vector pPZP221 for plant transformat... 76 7e-10 1
(U10490) Binary cloning vector pPZP211 for plant transformat... 76 7e-10 1
(U10489) Binary cloning vector pPZP201 for plant transformat... 76 7e-10 1
(U10488) Binary cloning vector pPZP121 for plant transformat... 76 7e-10 1
(U10487) Binary cloning vector pPZP111 for plant transformat... 76 7e-10 1
(U10486) Binary cloning vector pPZP101 for plant transformat... 76 7e-10 1
(U10463) Binary cloning vector pPZP222 for plant transformat... 76 7e-10 1
(U10462) Binary cloning vector pPZP212 for plant transformat... 76 7e-10 1
(U10461) Binary cloning vector pPZP202 for plant transformat... 76 7e-10 1
(U10459) Binary cloning vector pPZP122 for plant transformat... 76 7e-10 1
(U10458) Binary cloning vector pPZP112 for plant transformat... 76 7e-10 1
(U10457) Binary cloning vector pPZP102 for plant transformat... 76 7e-10 1
(U09365) Binary vector Bin19, complete sequence. 76 7e-10 1
(U08461) Cloning vector pMAKC76 with chloramphenicol acetylt... 76 7e-10 1
(U08460) Cloning vector pMAKK76 with kanamycin phosphotransf... 76 7e-10 1
(U07650) Cloning vector pUC119, complete sequence. 76 7e-10 1
(U07649) Cloning vector pUC118, complete sequence. 76 7e-10 1
(U07168) Cloning vector pUCP26, Escherichia-Pseudomonas shut... 76 7e-10 1
(U07167) Cloning vector pUCP24, Escherichia-Pseudomonas shut... 76 7e-10 1
(U07166) Cloning vector pUCP22, Escherichia-Pseudomonas shut... 76 7e-10 1
(U07165) Cloning vector pUCP20, Escherichia-Pseudomonas shut... 76 7e-10 1
(U07164) Cloning vector pUCP18, Escherichia-Pseudomonas shut... 76 7e-10 1
(U04610) Cloning vector pUCGM gentamycin-resistance cassette... 76 7e-10 1
(U03993) Cloning vector pZ1918 with lacZ cassette, complete ... 76 7e-10 1
(U03992) Cloning vector pX1918 with xylE cassette, complete ... 76 7e-10 1
(U03991) Cloning vector pUC1918, complete sequence. 76 7e-10 1
(U03460) Cloning vector pDO184, complete sequence. 76 7e-10 1
(U02444) Cloning vector pKK388-1, complete sequence. 76 7e-10 1
(U00800) Cloning vector Pk184, complete sequence. 76 7e-10 1
(M88655) Expression vector p-delta-blue DNA fragment. 76 7e-10 1
(M77815) M13mp18 phage cloning vector. 76 7e-10 1
(M77789) Cloning vector pUC19, complete sequence. 76 7e-10 1
(M77169) Cloning vector (C.perfringens,E.coli) replication e... 76 7e-10 1
(M74187) Cloning vector pKP497, complete sequence. 76 7e-10 1
(M74186) Cloning vector pEZZ18 (bacterial, cloning, expressi... 76 7e-10 1
(M64732) Cloning vector PSU2719 DNA. 76 7e-10 1
(M64731) Cloning vector pSU2718 DNA. 76 7e-10 1
(M62983) Cloning vector M13JN72 containing mutliple cloning ... 76 7e-10 1
(M36415) Synthetic E.coli pfxblue gene, complete cds. 76 7e-10 1
(M34307) Cloning vector pPD16.01. 76 7e-10 1
(M34306) Cloning vector pPD34.110. 76 7e-10 1
(M34305) Cloning vector pPD26.77. 76 7e-10 1
(M34304) Cloning vector pPD22.11. 76 7e-10 1
(M34303) Cloning vector pPD22.04. 76 7e-10 1
(M34302) Cloning vector pPD21.28. 76 7e-10 1
(M34301) Cloning vector pPD18.32. 76 7e-10 1
(M34300) Cloning vector pPD16.51. 76 7e-10 1
(M34299) Cloning vector pPD16.43. 76 7e-10 1
(M34298) Cloning vector pPD8.33. 76 7e-10 1
(M34297) Cloning vector pPD8.02. 76 7e-10 1
(M34296) Cloning vector pPD1.27. 76 7e-10 1
(M24052) E.coli vector pCG150 encoding modified maltose bind... 76 7e-10 1
(M22744) Cloning vector pTrc99A, complete sequence. 76 7e-10 1
(M22004) Synthetic cloning vector plasmid pSU2719 DNA. 76 7e-10 1
(M21656) E.coli vector pCG806 encoding modified maltose bind... 76 7e-10 1
(M19415) Synthetic plasimd pHSG299 DNA. 76 7e-10 1
(M19265) Plasmid pKUN9, a cloning vector, complete genome. 76 7e-10 1
(M19087) Synthetic plasimd pHSG399 DNA. 76 7e-10 1
(M18256) Cloning vector pEZZ18 fusion gene, partial cds. 76 7e-10 1
(M18133) R6K synthetic cosmid vector. 76 7e-10 1
(M17626) Synthetic plasmid pK18 (pBRNeo/pUC18) kanamycin res... 76 7e-10 1
(L47837) Cloning vector pKIL199, complete sequence. 76 7e-10 1
(L38949) Cloning vector pKIL129 ccdB gene, complete cds. 76 7e-10 1
(L38499) Cloning vector pKIL119 ccdB gene, complete cds and ... 76 7e-10 1
(L38497) Cloning vector pKIL109 ccdB gene, complete cds and ... 76 7e-10 1
(L37352) Cloning vector phagemid pTZ18U ampicillin resistanc... 76 7e-10 1
(L14759) YIp352, yeast (S. cerevisiae)/E. coli integrating s... 76 7e-10 1
(L14758) YEp352, yeast (S. cerevisiae)/E. coli shuttle vector. 76 7e-10 1
(L14757) YEp351, yeast (S.cerevisiae)/E.coli shuttle vector. 76 7e-10 1
(L14756) YIp351, yeast (S. cerevisiae)/E. coli integrating s... 76 7e-10 1
(L09144) pUC-f1 cloning vector. 76 7e-10 1
(L09137) Cloning vector pUC19c, complete sequence. 76 7e-10 1
(L09136) pUC18c cloning vector (beta-galactosidase mRNA on c... 76 7e-10 1
(L08956) pTZ18R cloning vector from PL-Pharmacia. 76 7e-10 1
(L08953) pT7T3A18 cloning vector. 76 7e-10 1
(L08952) pT7T319 cloning vector. 76 7e-10 1
(L08951) pT7T318 cloning vector. 76 7e-10 1
(L08948) pSP6T719 cloning vector. 76 7e-10 1
(L08946) pSP19 cloning vector. 76 7e-10 1
(L08945) pSP18 cloning vector. 76 7e-10 1
(L08912) pIC20H cloning vector. 76 7e-10 1
(L08872) pGEM3 cloning vector Gemini 3 from Promega Biotec. 76 7e-10 1
(L08821) M13mp19 phage cloning vector. 76 7e-10 1
(L08752) pUC18 cloning vector. 76 7e-10 1
(L02938) Shuttle vector pJIR751 beta-galactosidase alpha-pep... 76 7e-10 1
(L02937) Shuttle vector pJIR750 beta-galactosidase alpha-pep... 76 7e-10 1
(K02756) Plasmid pIC-20H cloning vector with 18 restriction ... 76 7e-10 1
(FM179296) Shuttle vector pNEV-N. 76 7e-10 1
(FM179295) Shuttle vector pNEV-E. 76 7e-10 1
(FJ599664) Transformation vector pOKE104, complete sequence. 76 7e-10 1
(FJ437239) Cloning vector pK18mobsacB, complete sequence. 76 7e-10 1
(FJ416606) Plastid transformation vector pSS30, complete seq... 76 7e-10 1
(FJ416605) Plastid transformation vector pSS24, complete seq... 76 7e-10 1
(FJ416604) Plastid transformation vector pSS22, complete seq... 76 7e-10 1
(FJ380061) Cloning vector pMQ156, complete sequence. 76 7e-10 1
(EU849663) Binary vector pCAMBIA1300-LMAR, complete sequence. 76 7e-10 1
(EU626137) Vector pTNS2-Easd, complete sequence. 76 7e-10 1
(EU606014) Broad host range vector pAP20, complete sequence. 76 7e-10 1
(EU603327) Escherichia-Pseudomonas shuttle vector pHERD26T, ... 76 7e-10 1
(EU603326) Escherichia-Pseudomonas shuttle vector pHERD30T, ... 76 7e-10 1
(EU603325) Escherichia-Pseudomonas shuttle vector pHERD28T, ... 76 7e-10 1
(EU603324) Escherichia-Pseudomonas shuttle vector pHERD20T, ... 76 7e-10 1
(EU547236) Shuttle vector pUCG18, complete genome. 76 7e-10 1
(EU546823) Cloning vector pMQ150, complete sequence. 76 7e-10 1
(EU546820) Cloning vector pMQ132, complete sequence. 76 7e-10 1
(EU546819) Cloning vector pMQ131, complete sequence. 76 7e-10 1
(EU546818) Cloning vector pMQ118, complete sequence. 76 7e-10 1
(EU546817) Cloning vector pMQ117, complete sequence. 76 7e-10 1
(EU546816) Cloning vector pMQ113, complete sequence. 76 7e-10 1
(EU491017) Suicide vector pEX18Km-pheS, complete sequence. 76 7e-10 1
(EU334848) Suicide vector pEX18Tp-pheS, complete sequence. 76 7e-10 1
(EU332348) Cloning vector pEX18Tc-pheS, complete sequence. 76 7e-10 1
(EU332347) Cloning vector pEX18Gm-pheS, complete sequence. 76 7e-10 1
(EU332346) Cloning vector pEX18Ap-pheS, complete sequence. 76 7e-10 1
(EU277854) Gene replacement vector pBAKA, complete sequence. 76 7e-10 1
(EU240901) FRT source vector pFRT3, complete sequence. 76 7e-10 1
(EU224430) Plastid transformation vector pPRV324Clox, comple... 76 7e-10 1
(EU224429) Plastid transformation vector pPRV323Blox, comple... 76 7e-10 1
(EU224428) Plastid transformation vector pPRV131B, complete ... 76 7e-10 1
(EU224427) Plastid transformation vector pPRV131A, complete ... 76 7e-10 1
(EU224426) Plastid transformation vector pPRV124Clox, comple... 76 7e-10 1
(EU224425) Plastid transformation vector pPRV123Clox, comple... 76 7e-10 1
(EU224424) Plastid transformation vector pPRV123Blox, comple... 76 7e-10 1
(EU224423) Plastid transformation vector pPRV145D, complete ... 76 7e-10 1
(EU224422) Plastid transformation vector pPRV145C, complete ... 76 7e-10 1
(EU215436) LoxP vector pLOX1, complete sequence. 76 7e-10 1
(EU215435) Zeocin resistance loxP vector pLZE1, complete seq... 76 7e-10 1
(EU215434) Kanamycin resistance loxP vector pLKM1, complete ... 76 7e-10 1
(EU215433) Kanamycin resistance FRT vector pFKM2, complete s... 76 7e-10 1
(EU215432) Tn7 transposase expression vector pTNS3, complete... 76 7e-10 1
(EU182593) Cloning vector pGT3, complete sequence. 76 7e-10 1
(EU140754) Cloning vector pIndigoBAC-5, complete sequence. 76 7e-10 1
(EU140753) Cloning vector pEPIFOS-5, complete sequence. 76 7e-10 1
(EU140752) Cloning vector pCC2FOS, complete sequence. 76 7e-10 1
(EU140751) Cloning vector pCC1FOS, complete sequence. 76 7e-10 1
(EU140750) Cloning vector pCC1BAC, complete sequence. 76 7e-10 1
(EU093094) Cloning vector pAW5, complete sequence. 76 7e-10 1
(EU048870) Cloning vector pSoup, complete sequence. 76 7e-10 1
(EU024543) Cloning vector pCPP5333, complete sequence. 76 7e-10 1
(EF437940) Broad host range expression vector pRK415, comple... 76 7e-10 1
(EF435043) Broad host range expression vector pRK415iq, comp... 76 7e-10 1
(EF416277) Plastid transformation vector pPRV111Aatt, comple... 76 7e-10 1
(EF416276) Plastid transformation vector pPRV111Batt, comple... 76 7e-10 1
(EF207439) Cloning vector pZKG19, complete sequence. 76 7e-10 1
(EF196094) Shuttle cloning vector pDOJ4, complete sequence. 76 7e-10 1
(EF155418) PGERM gene disruption vector, complete sequence. 76 7e-10 1
(EF059993) Cosmid vector pHM1, complete sequence. 76 7e-10 1
(EF025088) Cloning vector pGT2, complete sequence. 76 7e-10 1
(D63847) Cloning vector pKF19k DNA, complete sequence. 76 7e-10 1
(D63843) Cloning vector pKF299 DNA, complete sequence. 76 7e-10 1
(D29831) Cloning vector pKF19c DNA, complete sequence. 76 7e-10 1
(D29827) Cloning vector pKF399 DNA, complete sequence. 76 7e-10 1
(DQ986515) Cloning vector pECSBAC4, complete sequence. 76 7e-10 1
(DQ977670) Synthetic construct clone CC-40 from Pseudomonas ... 76 7e-10 1
(DQ658217) Binary vector pCAMBIA1300-FAD2b, complete sequence. 76 7e-10 1
(DQ642037) Shuttle vector pMQ72, complete sequence. 76 7e-10 1
(DQ642036) Shuttle vector pMQ71, complete sequence. 76 7e-10 1
(DQ642035) Shuttle vector pMQ70, complete sequence. 76 7e-10 1
(DQ500126) Cloning vector pMD-18-NiVPCRt, complete sequence. 76 7e-10 1
(DQ489715) Plastid transformation vector pPRV312L, complete ... 76 7e-10 1
(DQ460223) Tn7 delivery vector pGRG36, complete sequence. 76 7e-10 1
(DQ457004) Conjugative vector pHW001, complete sequence. 76 7e-10 1
(DQ320121) Binary vector pBINPLUS/ARS, complete sequence. 76 7e-10 1
(DQ266354) Cloning vector pBAD24hyg, complete sequence. 76 7e-10 1
(DQ230321) Shuttle/suicide vector pMQ89, complete sequence. 76 7e-10 1
(DQ230320) Shuttle/suicide vector pMQ87, complete sequence. 76 7e-10 1
(DQ230319) Shuttle/allelic-replacement vector pMQ75, complet... 76 7e-10 1
(DQ230318) Shuttle/allelic-replacement vector pMQ83, complet... 76 7e-10 1
(DQ230317) Shuttle/allelic-replacement vector pMQ30, complet... 76 7e-10 1
(DQ131584) Expression vector pBAD322S, complete sequence. 76 7e-10 1
(DQ124230) Zeocin resistance FRT vector pFZE1, complete sequ... 76 7e-10 1
(DQ124229) Apramycin resistance FRT vector pFAP1, complete s... 76 7e-10 1
(DQ123820) Shuttle vector pDOJHR, complete sequence. 76 7e-10 1
(DQ119287) Expression vector pBAD322Tp, complete sequence. 76 7e-10 1
(DQ119286) Expression vector pBAD322T, complete sequence. 76 7e-10 1
(DQ119285) Expression vector pBAD322K, complete sequence. 76 7e-10 1
(DQ119284) Expression vector pBAD322G, complete sequence. 76 7e-10 1
(DQ119283) Expression vector pBAD322C, complete sequence. 76 7e-10 1
(DQ119282) Expression vector pBAD322, complete sequence. 76 7e-10 1
(AY952933) Cloning vector pHTSUB-106, complete sequence. 76 7e-10 1
(AY928469) Cloning vector pEX18ApGW, complete sequence. 76 7e-10 1
(AY917125) Broad host range vector pSCrhaB2, complete sequence. 76 7e-10 1
(AY906831) Gene deletion vector pUCGM-lox, complete sequence. 76 7e-10 1
(AY906830) Gene deletion vector pEX100Tlink, complete sequence. 76 7e-10 1
(AY902486) Expression vector pHTSUB-105, complete sequence. 76 7e-10 1
(AY902485) Expression vector pLuxR-wt, complete sequence. 76 7e-10 1
(AY884833) T7 transposase expression vector pTNS2, complete ... 76 7e-10 1
(AY884832) Cloning and suicide delivery vector pUC18R6KT, co... 76 7e-10 1
(AY712951) Trimethoprim resistance FRT vector pFTP1, complet... 76 7e-10 1
(AY712950) Tetracycline resistance FRT vector pFTC1, complet... 76 7e-10 1
(AY665170) Expression vector pBeloBacModified, complete sequ... 76 7e-10 1
(AY652438) Promoter-probe vector pXH204, complete sequence. 76 7e-10 1
(AY652437) Promoter-probe vector pXH203, complete sequence. 76 7e-10 1
(AY652436) Promoter-probe vector pXH202, complete sequence. 76 7e-10 1
(AY652435) Promoter-probe vector pXH201, complete sequence. 76 7e-10 1
(AY652434) Promoter-probe vector pXH200, complete sequence. 76 7e-10 1
(AY622813) Cloning shuttle vector pSCR202, complete sequence. 76 7e-10 1
(AY622810) Cloning shuttle vector pSCR119, complete sequence. 76 7e-10 1
(AY597272) Kanamycin resistance FRT vector pFKM1, complete s... 76 7e-10 1
(AY597271) Chloramphenicol resistance FRT vector pFCM1, comp... 76 7e-10 1
(AY597270) Gentamycin resistance FRT vector pFGM1, complete ... 76 7e-10 1
(AY597269) FRT source vector pFRT2, complete sequence. 76 7e-10 1
(AY590429) Cloning vector pACCMVpLpARS(+), partial sequence. 76 7e-10 1
(AY336796) Transformation vector pICon, complete sequence. 76 7e-10 1
(AY297462) Cosmid vector pRR54, complete sequence. 76 7e-10 1
(AY292466) BAC cloning vector pBACVM4, complete sequence. 76 7e-10 1
(AY265466) Shuttle vector pAM2770, complete sequence. 76 7e-10 1
(AY263154) Cloning vector pAM2600, complete sequence. 76 7e-10 1
(AY237122) Cloning vector pNW33N, complete sequence. 76 7e-10 1
(AY222823) Shuttle vector pEC-S18mob2, complete sequence. 76 7e-10 1
(AY222821) Shuttle vector pEC-C18mob2, complete sequence. 76 7e-10 1
(AY222820) Cloning vector pG18mob2, complete sequence. 76 7e-10 1
(AY222818) Cloning vector pT18mob2, complete sequence. 76 7e-10 1
(AY222816) Cloning vector pS18mob2, complete sequence. 76 7e-10 1
(AY222814) Cloning vector pK18mob2, complete sequence. 76 7e-10 1
(AY222812) Cloning vector pC18mob2, complete sequence. 76 7e-10 1
(AY219701) Cloning vector pAZ1, complete sequence. 76 7e-10 1
(AY219695) Shuttle vector pBHT18mob2, complete sequence. 76 7e-10 1
(AY219694) Shuttle vector pBHK18mob2, complete sequence. 76 7e-10 1
(AY219693) Shuttle vector pBHC18mob2, complete sequence. 76 7e-10 1
(AY219692) Shuttle vector pBHT18, complete sequence. 76 7e-10 1
(AY219691) Shuttle vector pBHK18, complete sequence. 76 7e-10 1
(AY219690) Shuttle vector pBHC18, complete sequence. 76 7e-10 1
(AY219689) Expression vector pXT99A, complete sequence. 76 7e-10 1
(AY219688) Expression vector pXS99A, complete sequence. 76 7e-10 1
(AY219686) Expression vector pXK99E, complete sequence. 76 7e-10 1
(AY219685) Expression vector pXC99E, complete sequence. 76 7e-10 1
(AY219684) Shuttle expression vector pEC-XT99A, complete seq... 76 7e-10 1
(AY219683) Shuttle expression vector pEC-XK99E, complete seq... 76 7e-10 1
(AY219682) Shuttle expression vector pEC-XC99E, complete seq... 76 7e-10 1
(AY187276) Shuttle vector pBSV2, complete sequence. 76 7e-10 1
(AY187049) Shuttle vector cp9, complete sequence. 76 7e-10 1
(AY150268) CRIM plasmid pSK67, complete sequence. 76 7e-10 1
(AY112734) Broad host range vector pMLS7, complete sequence. 76 7e-10 1
(AY112733) Broad host range vector pMLBAD, complete sequence. 76 7e-10 1
(AY078414) Synthetic construct delta76-LacZ-alpha-peptide ge... 76 7e-10 1
(AM697672) Cloning vector pZCAA. 76 7e-10 1
(AM697671) Cloning vector pZCAL. 76 7e-10 1
(AM697670) Cloning vector pZCA. 76 7e-10 1
(AM696691) Cloning vector pZEA. 76 7e-10 1
(AM696690) Cloning vector pZEL. 76 7e-10 1
(AM696689) Cloning vector pZEU. 76 7e-10 1
(AJ628448) Cloning vector pGID052. 76 7e-10 1
(AJ537513) Synthetic construct plasmid pAC106. 76 7e-10 1
(AJ509853) Cloning vector pUvBBAC. 76 7e-10 1
(AJ237753) Cloning vector pKID19, containing beta-lactamase ... 76 7e-10 1
(AJ133194) Shuttle vector pMJ-A (Corynebacterium glutamicum ... 76 7e-10 1
(AJ133193) Shuttle vector pMJ1 (Corynebacterium glutamicum /... 76 7e-10 1
(AJ009780) Synthetic construct Acetobacter europaeus-Acetoba... 76 7e-10 1
(AF521666) Cloning vector pLOI2065 complete sequence. 76 7e-10 1
(AF519766) Cloning vector pMAK705, complete sequence. 76 7e-10 1
(AF480833) Cloning vector pNOT218 beta-lactamase (bla) and b... 76 7e-10 1
(AF445081) Cloning vector pEC-T18mob2, complete sequence. 76 7e-10 1
(AF445080) Cloning vector pEC-K18mob2, complete sequence. 76 7e-10 1
(AF354046) Binary vector pCAMBIA-1305.2, complete sequence. 76 7e-10 1
(AF354045) Binary vector pCAMBIA-1305.1, complete sequence. 76 7e-10 1
(AF327717) Cloning vector pCM160, complete sequence. 76 7e-10 1
(AF327716) Cloning vector pCM80, complete sequence. 76 7e-10 1
(AF327715) Cloning vector pCM66, complete sequence. 76 7e-10 1
(AF327714) Cloning vector pCM62, complete sequence. 76 7e-10 1
(AF325903) Cloning vector pFH2191, complete sequence. 76 7e-10 1
(AF323603) Cloning vector pPOP, complete sequence. 76 7e-10 1
(AF294978) Cloning vector pC1300intC, complete sequence. 76 7e-10 1
(AF294977) Cloning vector pC1300intB, complete sequence. 76 7e-10 1
(AF294976) Cloning vector pC1300intA, complete sequence. 76 7e-10 1
(AF234316) Binary vector pCAMBIA-2301, complete sequence. 76 7e-10 1
(AF234315) Binary vector pCAMBIA-2300, complete sequence. 76 7e-10 1
(AF234314) Binary vector pCAMBIA-2201, complete sequence. 76 7e-10 1
(AF234313) Binary vector pCAMBIA-2200, complete sequence. 76 7e-10 1
(AF234300) Binary vector pCAMBIA-1304, complete sequence. 76 7e-10 1
(AF234299) Binary vector pCAMBIA-1303, complete sequence. 76 7e-10 1
(AF234298) Binary vector pCAMBIA-1302, complete sequence. 76 7e-10 1
(AF234297) Binary vector pCAMBIA-1301, complete sequence. 76 7e-10 1
(AF234296) Binary vector pCAMBIA-1300, complete sequence. 76 7e-10 1
(AF234293) Binary vector pCAMBIA-1201, complete sequence. 76 7e-10 1
(AF234292) Binary vector pCAMBIA-1200, complete sequence. 76 7e-10 1
(AF216803) Shuttle vector pDL276, complete sequence. 76 7e-10 1
(AF216802) Shuttle vector pDL278, complete sequence. 76 7e-10 1
(AF203972) Shuttle vector pBA complete sequence. 76 7e-10 1
(AF178451) Integration vector pCD11PZ1 chloramphenicol trans... 76 7e-10 1
(AF134573) Cloning vector p34S-Sm3, complete sequence. 76 7e-10 1
(AF134572) Cloning vector p34S-Sm2, complete sequence. 76 7e-10 1
(AF128862) Cloning vector pHIND2.2, complete sequence. 76 7e-10 1
(AF125995) Shuttle vector pUCP-Nde, complete sequence. 76 7e-10 1
(AF125994) Shuttle vector pUCP-Nco, complete sequence. 76 7e-10 1
(AF083409) Cloning vector p34S-Tp2, complete sequence. 76 7e-10 1
(AF083408) Cloning vector p34S-Km3, complete sequence. 76 7e-10 1
(AF083407) Cloning vector p34S-Cm2, complete sequence. 76 7e-10 1
(AF064067) Expression vector pYZ81N, complete sequence. 76 7e-10 1
(AF064066) Expression vector pYZ41N, complete sequence. 76 7e-10 1
(AF062083) Cloning vector p34S-Tp, complete sequence. 76 7e-10 1
(AF062082) Cloning vector p34S-Tc, complete sequence. 76 7e-10 1
(AF062081) Cloning vector p34S-Sm, complete sequence. 76 7e-10 1
(AF062080) Cloning vector p34S-Km, complete sequence. 76 7e-10 1
(AF062079) Cloning vector p34S-Gm, complete sequence. 76 7e-10 1
(AF062078) Cloning vector p34S-Cm, complete sequence. 76 7e-10 1
(AF049064) Expression vector pYZ3N-GFP, complete sequence. 76 7e-10 1
(AF049063) Expression vector pYZ1N, complete sequence. 76 7e-10 1
(AF047519) Cloning vector pEX18Tc, complete sequence. 76 7e-10 1
(AF047518) Cloning vector pEX18Gm, complete sequence. 76 7e-10 1
(AF025747) Cloning vector pUC-HY, hygromycin B-resistance ge... 76 7e-10 1
(AF025746) Cloning vector pUC-HY-INT, positive selection myc... 76 7e-10 1
(AF025392) Cloning vector pUC-GM-INT, complete sequence. 76 7e-10 1
(AF012346) Synthetic construct kanamycin resistance protein ... 76 7e-10 1
(AF004910) Cloning vector pEX18T, complete sequence. 76 7e-10 1
(AB477002) Suicide vector pYMD2 DNA, complete sequence. 76 7e-10 1
(AB444683) Shuttle vector pCRB15 DNA, complete sequence. 76 7e-10 1
(AB437137) Shuttle vector pCRA429 DNA, complete sequence. 76 7e-10 1
(AB353144) Positive selection vector pTCS DNA, complete sequ... 76 7e-10 1
(AB267086) Shuttle vector pNV19 DNA, complete sequence. 76 7e-10 1
(AB267085) Shuttle vector pNV18 DNA, complete sequence. 76 7e-10 1
(AB236930) Cloning vector pCL1920 DNA, complete sequence. 76 7e-10 1
(AB206288) Cloning vector pND50 DNA, complete sequence. 76 7e-10 1
(AB183146) Integration vector pCRA732 containing a mini comp... 76 7e-10 1
(AB124780) Cloning vector pGreen DNA, complete sequence. 76 7e-10 1
(AB082961) Cloning vector pMG171 DNA, complete genome. 76 7e-10 1
(AB082960) Cloning vector pMG170 DNA, complete genome. 76 7e-10 1
(AB055652) Thermosensitive suicide vector pSET6s DNA, comple... 76 7e-10 1
(AB055651) Thermosensitive suicide vector pSET5s DNA, comple... 76 7e-10 1
(AB055650) Thermosensitive suicide vector pSET4s DNA, comple... 76 7e-10 1
(AB042430) Shuttle vector pSET2 DNA, complete sequence. 76 7e-10 1
(AB040452) Shuttle vector pRES19 DNA, complete sequence. 76 7e-10 1
(AB038146) Cloning vector pGFPTA DNA, complete sequence. 76 7e-10 1
(AB032348) Cloning vector pNU73 repA, Kmr genes for rep-prot... 76 7e-10 1
(AB031078) Cloning vector pMG105 DNA, complete sequence. 76 7e-10 1
(AB031077) Cloning vector pMG103 DNA, complete sequence. 76 7e-10 1
(AB019614) Cloning vector pTH19cs5 DNA, complete sequence. 76 7e-10 1
(AB019613) Cloning vector pTH19cs1 DNA, complete sequence. 76 7e-10 1
(AB019612) Cloning vector pTH19cr DNA, complete sequence. 76 7e-10 1
(AB019608) Cloning vector pTH19ks5 DNA, complete sequence. 76 7e-10 1
(AB019607) Cloning vector pTH19ks1 DNA, complete sequence. 76 7e-10 1
(AB019606) Cloning vector pTH19kr DNA, complete sequence. 76 7e-10 1
(AB005478) Cloning vector pMW219 DNA for repA protein and ne... 76 7e-10 1
(AB005477) Cloning vector pMW218 DNA for repA protein and ne... 76 7e-10 1
(AB005476) Cloning vector pMW119 DNA for repA protein and be... 76 7e-10 1
(AB005475) Cloning vector pMW118 gene for repA protein, beta... 76 7e-10 1
(G73470) H5T7 chicken BAC Gallus Gallus STS genomic, sequenc... 76 7e-10 1
(G73217) ccsu11 Microsatellite rich genomic DNA library AGRO... 76 7e-10 1
(G73215) ccsu6 Microsatellite rich genomic DNA library AGROG... 76 7e-10 1
(G73214) ccsu4 Microsatellite rich genomic DNA library AGROG... 76 7e-10 1

>(AU061926) Dictyostelium discoideum slug cDNA, clone SLG638.
Length = 252

Score = 131 bits (66), Expect(2) = 1e-42
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 86 gtagtgttgcacatttaaatggtaaatcatctgtaaaaagtactcatgcaaatcataaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gtagtgttgcacatttaaatggtaaatcatctgtaaaaagtactcatgcaaatcataaat 145


Query: 146 acgata 151
||||||
Sbjct: 146 acgata 151

Score = 75.8 bits (38), Expect(2) = 1e-42
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 214 gggatcctctagagtcgacctgcaggcatgcaagcttg 251
||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gggatcctctagagtcgacctgcaggcatgcaagcttg 251

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 99,272,258
Number of extensions: 5853537
Number of successful extensions: 1998833
Number of sequences better than 10.0: 241660
Length of query: 251
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 228
Effective length of database: 99,442,330,388
Effective search space: 22672851328464
Effective search space used: 22672851328464
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04147-1 (Contig-U04147-1Q) /CSM_Contig/Contig-U04147-1Q.Seq.d
(251 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AB051748_1(AB051748|pid:none) Uncultured microorganism PCRMHD11 ... 32 7.1
AF004910_2(AF004910|pid:none) Cloning vector pEX18T, complete se... 32 7.1
U00800_1(U00800|pid:none) Cloning vector Pk184, complete sequence. 32 7.1
U07164_2(U07164|pid:none) Cloning vector pUCP18, Escherichia-Pse... 32 7.1
U38693_3(U38693|pid:none) Shuttle vector pSEmp18BBXM, complete s... 32 7.1
EU603324_3(EU603324|pid:none) Escherichia-Pseudomonas shuttle ve... 32 7.1
U56996_1(U56996|pid:none) Cloning vector pGreen A18 complete seq... 32 7.1
AF234292_3(AF234292|pid:none) Binary vector pCAMBIA-1200, comple... 32 7.1
X81837_1(X81837|pid:none) E.coli DNA for pBAD24 cloning vector. 32 7.1
AB444683_2(AB444683|pid:none) Shuttle vector pCRB15 DNA, complet... 32 7.1
M36415_1(M36415|pid:none) Synthetic E.coli pfxblue gene, complet... 32 7.1
X70493_1(X70493|pid:none) Bacteriophage M13mp18 lacZ DNA mutatio... 32 7.1
AJ237752_1(AJ237752|pid:none) Cloning vector pKID18, containing ... 32 7.1
FJ437239_3(FJ437239|pid:none) Cloning vector pK18mobsacB, comple... 32 7.1
AB019603_1(AB019603|pid:none) Cloning vector pTH18kr DNA, comple... 32 7.1
M88655_1(M88655|pid:none) Expression vector p-delta-blue DNA fra... 32 7.1
M24052_1(M24052|pid:none) E.coli vector pCG150 encoding modified... 32 7.1
AB267085_1(AB267085|pid:none) Shuttle vector pNV18 DNA, complete... 32 7.1
FM212242_1(FM212242|pid:none) Cloning shuttle vector pA13. 32 7.1
AB019609_1(AB019609|pid:none) Cloning vector pTH18cr DNA, comple... 32 7.1
FJ705806_50(FJ705806|pid:none) Escherichia coli plasmid pRAx, co... 32 9.3

>AB051748_1(AB051748|pid:none) Uncultured microorganism PCRMHD11
gene for phenol hydroxylase large subunit, partial cds.
Length = 203

Score = 32.0 bits (71), Expect = 7.1
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3

Query: 213 GDPLESTCRHASL 251
GDPLESTCRHASL
Sbjct: 191 GDPLESTCRHASL 203

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 203,067,051
Number of extensions: 1818839
Number of successful extensions: 2487
Number of sequences better than 10.0: 21
Number of HSP's gapped: 2487
Number of HSP's successfully gapped: 21
Length of query: 83
Length of database: 1,061,185,681
Length adjustment: 53
Effective length of query: 30
Effective length of database: 887,957,937
Effective search space: 26638738110
Effective search space used: 26638738110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT

psg: 0.75 gvh: 0.29 alm: 0.66 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: cytoskeletal
12.0 %: mitochondrial

>> prediction for Contig-U04147-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0