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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U00893-1
Contig ID Contig-U00893-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U00893-1 (Contig-U00893-1Q) /CSM_Contig/Contig-U00893-1Q.Seq.d
CTGAAAGGGTAAATGAAAAATTTATTAAATTCAACAAATGGTAAAAGTTA
ACAATAATACAAGTACAACCCTAAATAATAATAATGGTCAATTAGTACCA
ATTATATTACCAATGACAAAGAAAACGCCAACTTTATTCTGTAAATATTG
TGGTTCAGGTCATCATCCTGATAGTTTTGAAATGAAACAAAAAGCATGTT
CAATTCAGTATAAAGGTGTTTCCTATACCACTATCATTAGTTCATTTCCA
CAAATTGTAATCACTTATCCTCCAAATTTCGATCCAGAATCAAAAATGCC
AAATCCAAATTCAATATCACCAATTAAATATATTTCAAATAGAACAATCA
GTCAACCATTCAAAGCTGAAACTTTACCAATCGATTGGATTCAATTGGTT
ATGAAATCAATTGGTATACCAAGACTAAAGGATTCATCCTGTTCTTTTGA
TGCTGAGGAAATCATTTATCAAGCTTCAATTCTTTTCATGAGAAATTTAA
TTGGTGAAACTTTTCAAGTTTATCAAGAGGAAAGAGATAAGGAACCAAAA
GAAGATTGTGTCATAAAATTAATGGTACCTGCTCATTTACATACTGCAAT
TAAAAATACTCCCCTATTTAATTTTATTAGTAATATTGCACTTTATAGAG
NATTAA
Gap no gap
Contig length 656
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1029468
End point 1028812
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U00893
List of clone(s) 

est1=SFB183Z,1,657
Translated Amino Acid sequence 
*kgk*kiy*IQQMVKVNNNTSTTLNNNNGQLVPIILPMTKKTPTLFCKYCGSGHHPDSFE
MKQKACSIQYKGVSYTTIISSFPQIVITYPPNFDPESKMPNPNSISPIKYISNRTISQPF
KAETLPIDWIQLVMKSIGIPRLKDSSCSFDAEEIIYQASILFMRNLIGETFQVYQEERDK
EPKEDCVIKLMVPAHLHTAIKNTPLFNFISNIALYRXL
Translated Amino Acid sequence (All Frames) 
Frame A:
lkg*mknllnstngks*q*ykynpk***wsistnyitndkenanfil*ilwfrsss**f*
netksmfnsv*rcflyhyh*fistncnhlsskfrsriknakskfnitn*iyfk*nnqsti
qs*nftnrldsigyeinwytktkgfilff*c*gnhlssfnsfhekfnw*nfsslsrgkr*
gtkrrlchkingtcsftycn*kyspi*fy**yctl*xi


Frame B:
*kgk*kiy*IQQMVKVNNNTSTTLNNNNGQLVPIILPMTKKTPTLFCKYCGSGHHPDSFE
MKQKACSIQYKGVSYTTIISSFPQIVITYPPNFDPESKMPNPNSISPIKYISNRTISQPF
KAETLPIDWIQLVMKSIGIPRLKDSSCSFDAEEIIYQASILFMRNLIGETFQVYQEERDK
EPKEDCVIKLMVPAHLHTAIKNTPLFNFISNIALYRXL


Frame C:
ervnekfikfnkw*kltiiqvqp*iiimvn*yqlyyq*qrkrqlysvnivvqviilivlk
*nkkhvqfsikvfpiplslvhfhkl*slilqisiqnqkcqiqiqyhqlnifqieqsvnhs
klklyqsigfnwl*nqlvyqd*rihpvllmlrksfiklqffs*ei*lvklfkfikrkeir
nqkkivs*n*wylliyilqlkilpylillvilhfiex*
own update 2004. 6.21
Homology vs CSM-cDNA 
Query= Contig-U00893-1 (Contig-U00893-1Q)
/CSM_Contig/Contig-U00893-1Q.Seq.d
         (656 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00893-1 (Contig-U00893-1Q) /CSM_Contig/Conti...  1294  0.0
Contig-U15541-1 (Contig-U15541-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U14436-1 (Contig-U14436-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U05214-1 (Contig-U05214-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U02378-1 (Contig-U02378-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U13973-1 (Contig-U13973-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U02294-1 (Contig-U02294-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U01723-1 (Contig-U01723-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U01006-1 (Contig-U01006-1Q) /CSM_Contig/Conti...    36  0.065
Contig-U00542-1 (Contig-U00542-1Q) /CSM_Contig/Conti...    36  0.065

>Contig-U00893-1 (Contig-U00893-1Q) /CSM_Contig/Contig-U00893-1Q.Seq.d
          Length = 656

 Score = 1294 bits (653), Expect = 0.0
 Identities = 656/656 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaagggtaaatgaaaaatttattaaattcaacaaatggtaaaagttaacaataatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgaaagggtaaatgaaaaatttattaaattcaacaaatggtaaaagttaacaataatac 60

                                                                       
Query: 61  aagtacaaccctaaataataataatggtcaattagtaccaattatattaccaatgacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagtacaaccctaaataataataatggtcaattagtaccaattatattaccaatgacaaa 120

                                                                       
Query: 121 gaaaacgccaactttattctgtaaatattgtggttcaggtcatcatcctgatagttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaacgccaactttattctgtaaatattgtggttcaggtcatcatcctgatagttttga 180

                                                                       
Query: 181 aatgaaacaaaaagcatgttcaattcagtataaaggtgtttcctataccactatcattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgaaacaaaaagcatgttcaattcagtataaaggtgtttcctataccactatcattag 240

                                                                       
Query: 241 ttcatttccacaaattgtaatcacttatcctccaaatttcgatccagaatcaaaaatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcatttccacaaattgtaatcacttatcctccaaatttcgatccagaatcaaaaatgcc 300

                                                                       
Query: 301 aaatccaaattcaatatcaccaattaaatatatttcaaatagaacaatcagtcaaccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaatccaaattcaatatcaccaattaaatatatttcaaatagaacaatcagtcaaccatt 360

                                                                       
Query: 361 caaagctgaaactttaccaatcgattggattcaattggttatgaaatcaattggtatacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaagctgaaactttaccaatcgattggattcaattggttatgaaatcaattggtatacc 420

                                                                       
Query: 421 aagactaaaggattcatcctgttcttttgatgctgaggaaatcatttatcaagcttcaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagactaaaggattcatcctgttcttttgatgctgaggaaatcatttatcaagcttcaat 480

                                                                       
Query: 481 tcttttcatgagaaatttaattggtgaaacttttcaagtttatcaagaggaaagagataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcttttcatgagaaatttaattggtgaaacttttcaagtttatcaagaggaaagagataa 540

                                                                       
Query: 541 ggaaccaaaagaagattgtgtcataaaattaatggtacctgctcatttacatactgcaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaaccaaaagaagattgtgtcataaaattaatggtacctgctcatttacatactgcaat 600

                                                                   
Query: 601 taaaaatactcccctatttaattttattagtaatattgcactttatagagnattaa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaaaatactcccctatttaattttattagtaatattgcactttatagagnattaa 656


>Contig-U15541-1 (Contig-U15541-1Q) /CSM_Contig/Contig-U15541-1Q.Seq.d
          Length = 2760

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 88   tcaattagtaccaattatattac 110
            |||||||||||||||| ||||||
Sbjct: 1321 tcaattagtaccaattttattac 1343


>Contig-U14436-1 (Contig-U14436-1Q) /CSM_Contig/Contig-U14436-1Q.Seq.d
          Length = 301

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 25  ttaaattcaacaaatggtaaaag 47
           |||||||||| ||||||||||||
Sbjct: 193 ttaaattcaataaatggtaaaag 171


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,362
Number of Sequences: 8402
Number of extensions: 33362
Number of successful extensions: 4106
Number of sequences better than 10.0: 282
length of query: 656
length of database: 8,075,542
effective HSP length: 16
effective length of query: 640
effective length of database: 7,941,110
effective search space: 5082310400
effective search space used: 5082310400
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.19
Homology vs DNA 
Query= Contig-U00893-1 (Contig-U00893-1Q) /CSM_Contig/Contig-U00893-1Q.Seq.d
         (656 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ399043) Dictyostelium discoideum cDNA clone:dds3e21, 3' e...  1294   0.0    1
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...   700   0.0    4
(U48298) Dictyostelium discoideum rtoA gene, complete cds.        341   2e-89  1
(AM466658) Vitis vinifera contig VV78X174353.2, whole genome...    50   0.11   1
(AC159499) Bos taurus clone CH240-72G10, WORKING DRAFT SEQUE...    50   0.11   1
(AC163814) Bos taurus clone CH240-134H12, *** SEQUENCING IN ...    50   0.11   1
(DX444722) BE2007_O10_F IASMA L2 HindIII BAC library Vitis v...    50   0.11   1
(CU826187) A BAC library has been constructed from PN40024 g...    50   0.11   1
(CU797311) A BAC library has been constructed from PN40024 g...    50   0.11   1
(CT507623) A BAC library has been constructed from cultivar ...    50   0.11   1
(FG138264) AGN_ELP002xn24f1.ab1 AGN_ELP Nicotiana tabacum cD...    50   0.11   1
(BX927408) Zebrafish DNA sequence from clone DKEY-30I4 in li...    38   0.23   5
(AC193758) Trichinella spiralis BAC clone TS195-30H12 from c...    36   0.38   6
(AP010559) Lotus japonicus genomic DNA, clone: LjT15F22, TM2...    48   0.43   1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    32   0.56   13
(AC145979) Gallus gallus BAC clone CH261-10P22 from chromoso...    36   1.2    6
(FI043317) CHO_OF6469xl05r1.ab1 CHO_OF6 Nicotiana tabacum ge...    34   1.3    3
(AP009750) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   1.3    6
(CU861639) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.5    6
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    42   1.6    6
(AC170848) Bos taurus clone CH240-227J5, WORKING DRAFT SEQUE...    42   1.6    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   1.6    12
(AC152893) Saimiri boliviensis boliviensis clone CH254-211C3...    46   1.7    1
(AC148039) Ovis aries clone CH243-463D18, complete sequence.       46   1.7    1
(AC083902) Homo sapiens BAC clone RP11-766F14 from 4, comple...    46   1.7    1
(AC149437) Saimiri boliviensis boliviensis clone CH254-443I1...    46   1.7    1
(AC027065) Homo sapiens clone RP11-801P9, WORKING DRAFT SEQU...    46   1.7    1
(AC174546) Strongylocentrotus purpuratus clone R3-3112O4, WO...    46   1.7    1
(ET809862) CHO_OF717xe03r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.7    1
(EK284236) 1095462307138 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.7    1
(CZ878635) OC__Ba0280E03.f OC__Ba Oryza coarctata genomic cl...    46   1.7    1
(CZ852807) OC__Ba0242O20.f OC__Ba Oryza coarctata genomic cl...    46   1.7    1
(CT184683) Sus scrofa genomic clone CH242-110B23, genomic su...    46   1.7    1
(CV836864) ID0ACC3CC03RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    46   1.7    1
(CV832175) ID0ACC1BE02RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    46   1.7    1
(CV829389) ID0ACC12CD05RM1 ID0ACC Acyrthosiphon pisum cDNA c...    46   1.7    1
(EY314780) CAWX25696.rev CAWX Helobdella robusta Primary Ear...    46   1.7    1
(CU179711) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.8    7
(AC188026) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   1.9    4
(AE000783) Borrelia burgdorferi B31, complete genome.              32   2.1    12
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      38   2.3    15
(AC232697) Medicago truncatula chromosome 7 clone mth2-8b8, ...    34   2.5    6
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    38   2.5    8
(AM428692) Vitis vinifera contig VV78X214556.2, whole genome...    40   2.5    3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    30   2.6    8
(BX908730) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   2.8    5
(AC034127) Homo sapiens chromosome 11 clone RP11-392O13 map 11.    38   2.8    6
(AC072023) Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer ...    36   3.2    3
(AC094022) Homo sapiens chromosome 1 clone RP11-88N11, compl...    40   4.0    6
(ER499075) 1093015392456 Global-Ocean-Sampling_GS-35-01-01-1...    32   4.3    2
(EJ995123) 1093023082657 Global-Ocean-Sampling_GS-30-02-01-1...    32   4.3    2
(ER560032) 1093015739592 Global-Ocean-Sampling_GS-36-01-01-2...    34   4.3    2
(EJ480791) 1095403467343 Global-Ocean-Sampling_GS-28-01-01-1...    32   4.3    2
(EJ370642) 1092963723265 Global-Ocean-Sampling_GS-28-01-01-1...    32   4.3    2
(ER433746) 1092963788428 Global-Ocean-Sampling_GS-35-01-01-1...    32   4.3    2
(ER594984) 1093016217768 Global-Ocean-Sampling_GS-36-01-01-2...    32   4.3    2
(EJ554077) 1092959481472 Global-Ocean-Sampling_GS-29-01-01-1...    32   4.3    2
(EK228666) 1095460169235 Global-Ocean-Sampling_GS-31-01-01-1...    32   4.3    2
(EJ127728) 1092343401450 Global-Ocean-Sampling_GS-27-01-01-1...    34   4.3    2
(EJ541581) 1092955378760 Global-Ocean-Sampling_GS-29-01-01-1...    32   4.4    2
(EJ419329) 1093012219133 Global-Ocean-Sampling_GS-28-01-01-1...    32   4.4    2
(EJ945570) 1093018911613 Global-Ocean-Sampling_GS-30-02-01-1...    32   4.4    2
(EJ483054) 1095403482611 Global-Ocean-Sampling_GS-28-01-01-1...    32   4.4    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   4.5    10
(AB005247) Arabidopsis thaliana genomic DNA, chromosome 5, P...    36   5.0    4
(AC207608) Homo sapiens chromosome UNK clone ABC9-46214700H1...    40   5.2    3
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple...    30   5.5    5
(BX539346) Zebrafish DNA sequence from clone DKEYP-73G7 in l...    36   5.6    5
(AC213540) Populus trichocarpa clone POP053-A08, complete se...    34   5.7    6
(AC073689) Mus musculus clone RP23-141J22, WORKING DRAFT SEQ...    44   6.6    4
(AY850011) Rachycentron canadum clone 1 A08 microsatellite s...    44   6.6    1
(AC192791) Gallus gallus BAC clone TAM31-48K11 from chromoso...    44   6.6    1
(CT025561) Mouse DNA sequence from clone RP23-308G10 on chro...    44   6.6    1
(AC189698) Pan troglodytes BAC clone CH251-452L20 from chrom...    44   6.6    1
(AC187724) Pan troglodytes BAC clone CH251-318O15 from chrom...    44   6.6    1
(AP010270) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.6    1
(AP004471) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.6    1
(FB910351) Sequence 129624 from Patent WO2008034648.               44   6.6    1
(FB906133) Sequence 125406 from Patent WO2008034648.               44   6.6    1
(FB902883) Sequence 122156 from Patent WO2008034648.               44   6.6    1
(FB898702) Sequence 117975 from Patent WO2008034648.               44   6.6    1
(EA024355) Sequence 1312 from patent US 7135558.                   44   6.6    1
(DJ335390) CELL CYCLE GENES AND RELATED METHODS OF USING.          44   6.6    1
(CQ605219) Sequence 32977 from Patent WO0171042.                   44   6.6    1
(CQ587654) Sequence 15412 from Patent WO0171042.                   44   6.6    1
(AX345326) Sequence 397 from Patent WO0200928.                     44   6.6    1
(GC871313) Sequence 186558 from patent US 6812339.                 44   6.6    1
(GC701828) Sequence 17073 from patent US 6812339.                  44   6.6    1
(AR537811) Sequence 2373 from patent US 6737248.                   44   6.6    1
(AR356255) Sequence 2373 from patent US 6593114.                   44   6.6    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   6.6    1
(AC093121) Drosophila melanogaster 3L BAC RP98-11J11 (Roswel...    44   6.6    1
(AC010010) Drosophila melanogaster 3L BAC RP98-13F6 (Roswell...    44   6.6    1
(AC074257) Homo sapiens BAC clone RP11-796I2 from 7, complet...    44   6.6    1
(AC009298) Homo sapiens BAC clone RP11-17I6 from 2, complete...    44   6.6    1
(AC159527) Bos taurus clone CH240-25J18, WORKING DRAFT SEQUE...    44   6.6    1
(AC110071) Homo sapiens chromosome UNK clone RP13-875O11, WO...    44   6.6    1
(CU606960) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(AC073789) Mus musculus clone RP23-416A12, WORKING DRAFT SEQ...    44   6.6    1
(CU463070) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(CU424469) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(AP010216) Lotus japonicus genomic DNA, chromosome 6, clone:...    44   6.6    1
(AC201202) Strongylocentrotus purpuratus clone R3-15C22, WOR...    44   6.6    1
(AC178648) Strongylocentrotus purpuratus clone R3-11J23, WOR...    44   6.6    1
(AC175879) Strongylocentrotus purpuratus clone R3-15D21, WOR...    44   6.6    1
(AC171949) Bos taurus clone CH240-282L13, WORKING DRAFT SEQU...    44   6.6    1
(AC017671) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   6.6    1
(AC009409) Homo sapiens chromosome 2 clone RP11-327D3, WORKI...    44   6.6    1
(AZ929983) 479.dil57c11.s1 Saccharomyces kluyveri Lachancea ...    44   6.6    1
(AZ929945) 479.dil56h05.s1 Saccharomyces kluyveri Lachancea ...    44   6.6    1
(AQ563003) HS_5341_A1_H02_T7A RPCI-11 Human Male BAC Library...    44   6.6    1
(AQ484994) RPCI-11-237A5.TJ RPCI-11 Homo sapiens genomic clo...    44   6.6    1
(FI369067) CH321-76O03.x CHORI-321 Drosophila melanogaster g...    44   6.6    1
(FH222501) CHO_OF3383xd01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.6    1
(ET990900) CHO_OF768xa07f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.6    1
(ER878961) MUGQ_CH252P269H05Sp6_CN563_025 CHORI-252 Vervet M...    44   6.6    1
(ER830372) PPTGY80TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   6.6    1
(EJ779298) 1093011913633 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ764553) 1092963178787 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ659872) 1092955019640 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ527052) 1092955192576 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(EJ317194) 1095403306629 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.6    1
(EJ123011) 1092343381995 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.6    1
(AL406511) T7 end of clone AU0AA010F04 of library AU0AA from...    44   6.6    1
(DE936487) Macropus eugenii DNA, BAC clone: MEB1-129F02_F, 5...    44   6.6    1
(CW987015) KBrH013J02R KBrH, Brassica rapa HindIII BAC libra...    44   6.6    1
(CL525966) EY07875 Drosophila melanogaster P{EPgy2} P elemen...    44   6.6    1
(CC193327) CH261-108L18_RM1.1 CH261 Gallus gallus genomic cl...    44   6.6    1
(EL533573) EST_omor_eva_12726 omoreva mixed_tissue Osmerus m...    44   6.6    1
(EL533572) EST_omor_eva_12725 omoreva mixed_tissue Osmerus m...    44   6.6    1
(EG623890) EMBRYOF095453A3 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri...    44   6.6    1
(EG623706) EMBRYOF088231O18 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    44   6.6    1
(EG618529) REPROTRACTF101157L7 POSSUM_01-POSSUM-C-REPROTRACT...    44   6.6    1
(DR179511) RTMNUT1_22_C11.g2_A029 Roots minus micronutrients...    44   6.6    1
(DR021908) STRS1_47_D08.g1_A034 Shoot tip pitch canker susce...    44   6.6    1
(CT575613) Pinus pinaster bud EST.                                 44   6.6    1
(BW945923) Branchiostoma floridae cDNA, neurula clone:bfne14...    44   6.6    1
(BI974697) sai71g10.y1 Gm-c1068 Glycine max cDNA clone GENOM...    44   6.6    1
(FK001510) GLPAM88TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    44   6.6    1
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete...    44   6.6    1
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151...    44   6.6    1
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete...    44   6.6    1
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375...    44   6.6    1
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co...    44   6.6    1
(CP000046) Staphylococcus aureus subsp. aureus COL, complete...    44   6.6    1
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    44   6.6    1
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    44   6.6    1
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com...    44   6.6    1
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com...    44   6.6    1
(AP009552) Microcystis aeruginosa NIES-843 DNA, complete gen...    44   6.6    1
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D...    44   6.6    1
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp...    44   6.6    1
(AJ938182) Staphylococcus aureus RF122 complete genome.            44   6.6    1
(AC154159) Sus scrofa clone RP44-45H6, WORKING DRAFT SEQUENC...    42   6.7    3
(AE002148) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    36   7.5    3
(AC184759) Dasypus novemcinctus clone VMRC5-285H2, WORKING D...    38   7.7    4
(AL446023) Human DNA sequence from clone RP11-346O18 on chro...    40   7.8    3
(DE498214) Bombyx mori genomic DNA, Fosmid clone:GBMFno108_i...    38   7.8    2
(AC215436) Solanum lycopersicum chromosome 2 clone C02HBa030...    34   7.9    5
(CU467011) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.9    6
(AC118724) Mus musculus, clone RP24-160H20, complete sequence.     40   8.3    3
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    30   8.9    9
(EG997848) 031020NL19EPD00008E10 NL19EPD Neotyphodium lolii ...    32   9.0    3
(AC136111) Rattus norvegicus clone CH230-449G2, *** SEQUENCI...    38   9.1    4
(CP000627) Vibrio cholerae O395 chromosome 2, complete genome.     30   9.5    2
(AE003852) Vibrio cholerae O1 biovar eltor str. N16961 chrom...    30   9.6    2
(AC113590) Mus musculus chromosome 5, clone RP23-277L17, com...    38   9.6    7
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   9.7    11
(AY519818) Streptocephalus cafer cytochrome oxidase subunit ...    38   9.9    2

>(BJ399043) Dictyostelium discoideum cDNA clone:dds3e21, 3' end,
           single read.
          Length = 657

 Score = 1294 bits (653), Expect = 0.0
 Identities = 656/656 (100%)
 Strand = Plus / Minus


Query: 1   ctgaaagggtaaatgaaaaatttattaaattcaacaaatggtaaaagttaacaataatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctgaaagggtaaatgaaaaatttattaaattcaacaaatggtaaaagttaacaataatac 598


Query: 61  aagtacaaccctaaataataataatggtcaattagtaccaattatattaccaatgacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aagtacaaccctaaataataataatggtcaattagtaccaattatattaccaatgacaaa 538


Query: 121 gaaaacgccaactttattctgtaaatattgtggttcaggtcatcatcctgatagttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaaaacgccaactttattctgtaaatattgtggttcaggtcatcatcctgatagttttga 478


Query: 181 aatgaaacaaaaagcatgttcaattcagtataaaggtgtttcctataccactatcattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aatgaaacaaaaagcatgttcaattcagtataaaggtgtttcctataccactatcattag 418


Query: 241 ttcatttccacaaattgtaatcacttatcctccaaatttcgatccagaatcaaaaatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcatttccacaaattgtaatcacttatcctccaaatttcgatccagaatcaaaaatgcc 358


Query: 301 aaatccaaattcaatatcaccaattaaatatatttcaaatagaacaatcagtcaaccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaatccaaattcaatatcaccaattaaatatatttcaaatagaacaatcagtcaaccatt 298


Query: 361 caaagctgaaactttaccaatcgattggattcaattggttatgaaatcaattggtatacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caaagctgaaactttaccaatcgattggattcaattggttatgaaatcaattggtatacc 238


Query: 421 aagactaaaggattcatcctgttcttttgatgctgaggaaatcatttatcaagcttcaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagactaaaggattcatcctgttcttttgatgctgaggaaatcatttatcaagcttcaat 178


Query: 481 tcttttcatgagaaatttaattggtgaaacttttcaagtttatcaagaggaaagagataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcttttcatgagaaatttaattggtgaaacttttcaagtttatcaagaggaaagagataa 118


Query: 541 ggaaccaaaagaagattgtgtcataaaattaatggtacctgctcatttacatactgcaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggaaccaaaagaagattgtgtcataaaattaatggtacctgctcatttacatactgcaat 58


Query: 601 taaaaatactcccctatttaattttattagtaatattgcactttatagagnattaa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  taaaaatactcccctatttaattttattagtaatattgcactttatagagnattaa 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 958,750,667
Number of extensions: 64781876
Number of successful extensions: 5835825
Number of sequences better than 10.0: 169
Length of query: 656
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 632
Effective length of database: 99,340,224,878
Effective search space: 62783022122896
Effective search space used: 62783022122896
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U00893-1 (Contig-U00893-1Q) /CSM_Contig/Contig-U00893-1Q.Seq.d
         (656 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001087_1947(CP001087|pid:none) Desulfobacterium autotrophicum ...    37   0.66
(Q6F3F9) RecName: Full=Probable G-protein coupled receptor 126; ...    35   2.5
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    33   5.6
AB183546_1(AB183546|pid:none) Homo sapiens DREG mRNA for develop...    33   5.6
AB183549_1(AB183549|pid:none) Homo sapiens DREG mRNA for develop...    33   5.6
AB183548_1(AB183548|pid:none) Homo sapiens DREG mRNA for develop...    33   5.6
BC075798_1(BC075798|pid:none) Homo sapiens G protein-coupled rec...    33   5.6
BX640873_1(BX640873|pid:none) Homo sapiens mRNA; cDNA DKFZp686N0...    33   5.6
CP000388_2874(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    33   7.3
FJ647187_1(FJ647187|pid:none) Liposcelis decolor acetylcholinest...    33   7.3
AE008384_1732(AE008384|pid:none) Methanosarcina mazei strain Goe...    33   7.3
AP008215_909(AP008215|pid:none) Oryza sativa (japonica cultivar-...    33   9.5

>CP001087_1947(CP001087|pid:none) Desulfobacterium autotrophicum
           HRM2, complete genome.
          Length = 464

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 18/69 (26%), Positives = 40/69 (57%)
 Frame = +3

Query: 264 LILQISIQNQKCQIQIQYHQLNIFQIEQSVNHSKLKLYQSIGFNWL*NQLVYQD*RIHPV 443
           L++++++    CQI + Y+ L  FQ+  SV+   ++L QS+G   +   ++Y      P+
Sbjct: 47  LVVRVALVTLVCQISLYYNDLYDFQVASSVSEISIRLLQSLGITAIVLAVIYY---FFPL 103

Query: 444 LLMLRKSFI 470
           +++ + +FI
Sbjct: 104 VIIGQGAFI 112

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 970,142,845
Number of extensions: 18721403
Number of successful extensions: 43578
Number of sequences better than 10.0: 12
Number of HSP's gapped: 43565
Number of HSP's successfully gapped: 12
Length of query: 218
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 94
Effective length of database: 649,847,548
Effective search space: 61085669512
Effective search space used: 61085669512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.93  gvh: 0.36  alm: 0.44  top: 0.63  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  8.0 %: mitochondrial

>> prediction for Contig-U00893-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0