Contig-U04054-1
Contig ID Contig-U04054-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04054-1 (Contig-U04054-1Q) /CSM_Contig/Contig-U04054-1Q.Seq.d
TCACCCCCAATTTCATGATATGGTTAGTAAATTTAACGGAATGGGCACGT
TGGACATCTTCAGAGATTTTGTCAAAAGAGAAATTGGTTGAAAGAGTTGT
CACTTTATCATTCTTTATCGATTTAGCAAAGAGTTGTGTAGAGTTGGGTA
ACTATAATGCTGCCAATGCAATCGTTGGTGGTTTGAATCATTCTTCAATC
TCTCGTTTGAAATTGACTTGGGAAAGATTATCAACAAAGGTCACCCAAGA
TTATGATCGTCTATTGTCATTATTCGATCTTTCAATGAATTATAAGAATT
ATCGTGACGAAATTAAATCTACCAAAGCAAAGATTATACCTTATCTTGGT
TTATTCCCAAAGGATTTAATTGCAATTGAAGAGGGTAATGATAATTTTAC
AAATAATAATCTAATTAATACTGAGAAATTCCGTTTACTTTATCAAACTA
TTAAAAAGATTCAATCTTATCAACAACCACTTTTCACTTTTAAAACTTCT
GAACCAATTAAACAATATCTTAAAAATATTTCAAATGGTTTATCAGAAGA
AAAAGATTTCCATTCAATTAGTCATAAACTTGAACCAAGACAACAACAAA
CTCAATAAGAAAAAAAAAA

Gap no gap
Contig length 619
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3105206
End point 3105825
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U04054
List of clone(s)

est1=SSH128Z,1,620
est2=SLE645E,62,610
Translated Amino Acid sequence
TPNFMIWLVNLTEWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAIVGG
LNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGLFPK
DLIAIEEGNDNFTNNNLINTEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNISNGL
SEEKDFHSISHKLEPRQQQTQ*ekk


Translated Amino Acid sequence (All Frames)
Frame A:
sppis*yg**i*rnghvghlqrfcqkrnwlkelslyhslsi*qrvv*swvtimlpmqslv
v*iilqslv*n*lgkdyqqrspkimivychysifq*iiriivtklnlpkqrlylilvysq
ri*lqlkrvmiilqiii*lilrnsvyfikllkrfnlinnhfsllkllnqlnnilkifqmv
yqkkkisiqlvinlnqdnnklnkkkk


Frame B:
hpqfhdmvskfngmgtldifrdfvkreig*kschfiilyrfskelcrvg*l*ccqcnrww
fesffnlsfeidlgkiinkghprl*ssiviirsfnel*els*rn*iyqskdytlswfipk
gfncn*rg***fyk**sn*y*eipftlsny*kdsilstttfhf*nf*tn*tis*kyfkwf
irrkrfpfn*s*t*tktttnsirkkk


Frame C:
TPNFMIWLVNLTEWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAIVGG
LNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGLFPK
DLIAIEEGNDNFTNNNLINTEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNISNGL
SEEKDFHSISHKLEPRQQQTQ*ekk


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U04054-1 (Contig-U04054-1Q)
/CSM_Contig/Contig-U04054-1Q.Seq.d
(619 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04054-1 (Contig-U04054-1Q) /CSM_Contig/Conti... 1207 0.0
Contig-U10001-1 (Contig-U10001-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U11642-1 (Contig-U11642-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U09604-1 (Contig-U09604-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U09426-1 (Contig-U09426-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U03803-1 (Contig-U03803-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Conti... 34 0.17

>Contig-U04054-1 (Contig-U04054-1Q) /CSM_Contig/Contig-U04054-1Q.Seq.d
Length = 619

Score = 1207 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Plus


Query: 1 tcacccccaatttcatgatatggttagtaaatttaacggaatgggcacgttggacatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacccccaatttcatgatatggttagtaaatttaacggaatgggcacgttggacatctt 60


Query: 61 cagagattttgtcaaaagagaaattggttgaaagagttgtcactttatcattctttatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagagattttgtcaaaagagaaattggttgaaagagttgtcactttatcattctttatcg 120


Query: 121 atttagcaaagagttgtgtagagttgggtaactataatgctgccaatgcaatcgttggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttagcaaagagttgtgtagagttgggtaactataatgctgccaatgcaatcgttggtg 180


Query: 181 gtttgaatcattcttcaatctctcgtttgaaattgacttgggaaagattatcaacaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttgaatcattcttcaatctctcgtttgaaattgacttgggaaagattatcaacaaagg 240


Query: 241 tcacccaagattatgatcgtctattgtcattattcgatctttcaatgaattataagaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcacccaagattatgatcgtctattgtcattattcgatctttcaatgaattataagaatt 300


Query: 301 atcgtgacgaaattaaatctaccaaagcaaagattataccttatcttggtttattcccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcgtgacgaaattaaatctaccaaagcaaagattataccttatcttggtttattcccaa 360


Query: 361 aggatttaattgcaattgaagagggtaatgataattttacaaataataatctaattaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggatttaattgcaattgaagagggtaatgataattttacaaataataatctaattaata 420


Query: 421 ctgagaaattccgtttactttatcaaactattaaaaagattcaatcttatcaacaaccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgagaaattccgtttactttatcaaactattaaaaagattcaatcttatcaacaaccac 480


Query: 481 ttttcacttttaaaacttctgaaccaattaaacaatatcttaaaaatatttcaaatggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttcacttttaaaacttctgaaccaattaaacaatatcttaaaaatatttcaaatggtt 540


Query: 541 tatcagaagaaaaagatttccattcaattagtcataaacttgaaccaagacaacaacaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatcagaagaaaaagatttccattcaattagtcataaacttgaaccaagacaacaacaaa 600


Query: 601 ctcaataag 609
|||||||||
Sbjct: 601 ctcaataag 609


>Contig-U10001-1 (Contig-U10001-1Q) /CSM_Contig/Contig-U10001-1Q.Seq.d
Length = 1352

Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 159 gctgccaatgcaatcgttggt 179
|||||||||||||||||||||
Sbjct: 1009 gctgccaatgcaatcgttggt 1029


>Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Contig-U13873-1Q.Seq.d
Length = 1474

Score = 36.2 bits (18), Expect = 0.043
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 163 ccaatgcaatcgttggtg 180
||||||||||||||||||
Sbjct: 369 ccaatgcaatcgttggtg 386


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9757
Number of Sequences: 6905
Number of extensions: 9757
Number of successful extensions: 1071
Number of sequences better than 10.0: 123
length of query: 619
length of database: 5,674,871
effective HSP length: 16
effective length of query: 603
effective length of database: 5,564,391
effective search space: 3355327773
effective search space used: 3355327773
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.12
Homology vs DNA
Query= Contig-U04054-1 (Contig-U04054-1Q) /CSM_Contig/Contig-U04054-1Q.Seq.d
(619 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037987) Dictyostelium discoideum slug cDNA, clone SSH128. 1207 0.0 1
(AY160093) Dictyostelium discoideum nucleotide exchange fact... 1132 0.0 2
(AU034888) Dictyostelium discoideum slug cDNA, clone SLE645. 888 0.0 1
(AB032087) Rattus norvegicus RM1 mRNA, partial sequence. 48 0.40 1
(GC670809) Sequence 1401 from patent US 7447594. 48 0.40 1
(DJ006526) Primary rat hepatocyte toxicity modeling. 48 0.40 1
(DD315730) Primary Rat Hepatocyte Toxicity Modeling. 48 0.40 1
(DD268934) Molecular Hepatotoxicology Modeling. 48 0.40 1
(DD194036) Cardiotoxin Molecular Toxicology Modeling. 48 0.40 1
(GP047791) Sequence 2420 from patent US 7469185. 48 0.40 1
(AC149308) Zea mays clone ZMMBBc0307H13, *** SEQUENCING IN P... 48 0.40 1
(AC119105) Rattus norvegicus clone CH230-232M21, WORKING DRA... 48 0.40 1
(AC096980) Rattus norvegicus clone CH230-93N4, *** SEQUENCIN... 48 0.40 1
(FP102101) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1
(AC234176) Zea mays chromosome 1 clone CH201-363E11; ZMMBBc0... 48 0.40 1
(AC233901) Zea mays chromosome 9 clone ZMMBBb-127G23; ZMMBBb... 48 0.40 1
(AC229585) Zea mays chromosome 1 clone CH201-212K10; ZMMBBc0... 48 0.40 1
(AC216875) Zea mays chromosome 1 clone ZMMBBb-276G6; ZMMBBb0... 48 0.40 1
(AC209908) Zea mays chromosome 1 clone CH201-360A22; ZMMBBc0... 48 0.40 1
(AC209891) Zea mays chromosome 9 clone CH201-333H2; ZMMBBc03... 48 0.40 1
(AC209174) Zea mays chromosome 5 clone ZMMBBb-324D21; ZMMBBb... 48 0.40 1
(AC207797) Zea mays chromosome 2 clone CH201-403I21; ZMMBBc0... 48 0.40 1
(AC207265) Zea mays chromosome 9 clone CH201-238K10; ZMMBBc0... 48 0.40 1
(AC207256) Zea mays chromosome 1 clone CH201-285K18; ZMMBBc0... 48 0.40 1
(AC207243) Zea mays chromosome 2 clone CH201-290M20; ZMMBBc0... 48 0.40 1
(AC206982) Zea mays chromosome 5 clone CH201-166B11; ZMMBBc0... 48 0.40 1
(AC205791) Zea mays chromosome 1 clone CH201-301A5; ZMMBBc03... 48 0.40 1
(AC205594) Zea mays chromosome 1 clone ZMMBBb-186L6; ZMMBBb0... 48 0.40 1
(AC205486) Zea mays chromosome 4 clone CH201-353L12; ZMMBBc0... 48 0.40 1
(AC202186) Zea mays chromosome 2 clone CH201-37E24; ZMMBBc00... 48 0.40 1
(AC198141) Zea mays chromosome 10 clone CH201-103M20; ZMMBBc... 48 0.40 1
(AC195842) Zea mays chromosome 7 clone ZMMBBb-512F9; ZMMBBb0... 48 0.40 1
(AC194321) Zea mays chromosome 5 clone CH201-205N23; ZMMBBc0... 48 0.40 1
(AC192175) Zea mays chromosome 9 clone CH201-498I21; ZMMBBc0... 48 0.40 1
(AC191790) Zea mays chromosome 3 clone ZMMBBb-171B23; ZMMBBb... 48 0.40 1
(AC189098) Zea mays chromosome 1 clone CH201-162D1; ZMMBBc01... 48 0.40 1
(AC187260) Zea mays chromosome 6 clone CH201-393J13; ZMMBBc0... 48 0.40 1
(AC185593) Zea mays chromosome 1 clone ZMMBBb-490N11; ZMMBBb... 48 0.40 1
(AC185266) Zea mays chromosome 5 clone CH201-351D7; ZMMBBc03... 48 0.40 1
(ER518151) 1093015533880 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.40 1
(AQ067664) HS_2239_B2_B02_MF CIT Approved Human Genomic Sper... 48 0.40 1
(CZ551526) 04S0312-15D1-A12 UniformMu MuTAIL Library Zea may... 48 0.40 1
(CL234051) 02S0254-06D1-F02 UniformMu MuTAIL Library Zea may... 48 0.40 1
(CG847199) 01S0642-06B1-E08 UniformMu MuTAIL Library Zea may... 48 0.40 1
(CG466455) 01S0600-04D1-F12 UniformMu MuTAIL Library Zea may... 48 0.40 1
(CG084228) PUJGY70TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.40 1
(CC048317) 01S0415-04B1-A10 UniformMu MuTAIL Library Zea may... 48 0.40 1
(EG106470) MSAM180572_1152_2101 LCM-dissected maize inbred l... 48 0.40 1
(DW963147) MSAM265717_2534_0504 LCM-dissected maize shoot ap... 48 0.40 1
(DW958170) MSAM253813_2570_2489 LCM-dissected maize shoot ap... 48 0.40 1
(DW840046) MSAM284886_0496_2402 LCM-dissected maize shoot ap... 48 0.40 1
(DW838141) MSAM280657_0643_3472 LCM-dissected maize shoot ap... 48 0.40 1
(DV727123) RVL19569 Wackym-Soares normalized rat vestibular ... 48 0.40 1
(DV724316) RVL16359 Wackym-Soares normalized rat vestibular ... 48 0.40 1
(CK844261) UI-R-BJ1-avz-a-05-0-UI.s10 UI-R-BJ1 Rattus norveg... 48 0.40 1
(CB584119) AMGNNUC:URRG1-00102-D1-A urrg1 (14046) Rattus nor... 48 0.40 1
(CB328118) UI-R-FS0-cry-p-08-0-UI.s1 NCI_CGAP_FS0 Rattus nor... 48 0.40 1
(AI599420) EST251123 Normalized rat embryo, Bento Soares Rat... 48 0.40 1
(BQ783214) UI-R-FF0-cpf-c-01-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 48 0.40 1
(BQ202544) UI-R-DO1-cmm-g-15-0-UI.s1 UI-R-DO1 Rattus norvegi... 48 0.40 1
(AI179464) EST223177 Normalized rat spleen, Bento Soares Rat... 48 0.40 1
(BG670692) DRNBEC09 Rat DRG Library Rattus norvegicus cDNA c... 48 0.40 1
(BG670492) DRNBBH02 Rat DRG Library Rattus norvegicus cDNA c... 48 0.40 1
(BF389537) UI-R-CJ0-bfc-h-06-0-UI.s1 UI-R-CJ0 Rattus norvegi... 48 0.40 1
(BE111806) UI-R-BJ1-avz-a-05-0-UI.s1 UI-R-BJ1 Rattus norvegi... 48 0.40 1
(AW919852) EST351156 Rat gene index, normalized rat, norvegi... 48 0.40 1
(AC185373) Microcebus murinus clone CH257-246P19, WORKING DR... 34 0.65 5
(FE185848) LV_NC_RA38P14r Litopenaeus vannamei nerve cord cD... 42 0.75 2
(BX248510) Zebrafish DNA sequence from clone DKEY-88P24 in l... 34 0.84 2
(AL732562) Zebrafish DNA sequence from clone CH211-103D22 in... 34 0.84 2
(FG996178) GLLEO15TR JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 36 1.1 2
(FG996177) GLLEO15TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 36 1.1 2
(BF595644) su78g03.y1 Gm-c1055 Glycine max cDNA clone GENOME... 36 1.1 2
(BF715924) saa11g08.y1 Gm-c1058 Glycine soja cDNA clone GENO... 36 1.1 2
(AC004051) Homo sapiens chromosome 4 clone B208G5 map 4q25, ... 44 1.4 4
(BC068173) Mus musculus TCDD-inducible poly(ADP-ribose) poly... 46 1.6 1
(AC154770) Mus musculus BAC clone RP24-448C20 from chromosom... 46 1.6 1
(AC114650) Mus musculus chromosome 3, clone RP24-151O6, comp... 46 1.6 1
(AC113279) Mus musculus chromosome 3, clone RP23-389J8, comp... 46 1.6 1
(AM441632) Vitis vinifera contig VV78X218256.21, whole genom... 46 1.6 1
(AC132773) Rattus norvegicus clone CH230-15I24, WORKING DRAF... 46 1.6 1
(AC095152) Rattus norvegicus clone CH230-8I9, WORKING DRAFT ... 46 1.6 1
(CU639455) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(AK028529) Mus musculus 0 day neonate skin cDNA, RIKEN full-... 46 1.6 1
(AQ864353) nbeb0023A23r CUGI Rice BAC Library (EcoRI) Oryza ... 46 1.6 1
(ET187506) 11dRC02 American mink BAC library Neovison vison ... 46 1.6 1
(AM624448) Entamoeba dispar GSS, clone dispar10c12.p1k. 46 1.6 1
(EJ356074) 1092963639660 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.6 1
(EI293701) GM_WBc0016K19.f GM_WBc Glycine max genomic clone ... 46 1.6 1
(CR327728) mte1-56B11FM1 BAC end, cultivar Jemalong A17 of M... 46 1.6 1
(AV027963) Mus musculus adult male liver cDNA, RIKEN full-le... 46 1.6 1
(CO813713) AGENCOURT_30255032 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO811513) AGENCOURT_30254931 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO811361) AGENCOURT_30247023 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO806244) AGENCOURT_30255030 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO800595) AGENCOURT_30254148 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO797291) AGENCOURT_30256235 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO796951) AGENCOURT_30246880 NIH_MGC_256 Mus musculus cDNA ... 46 1.6 1
(CO043396) UI-M-HB0-ckd-i-01-0-UI.s1 NIH_BMAP_HB0 Mus muscul... 46 1.6 1
(AI882598) ub98d06.r1 Soares_mammary_gland_NbMMG Mus musculu... 46 1.6 1
(BY382325) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful... 46 1.6 1
(BQ833704) LL6in22590 AFT024-subtracted library Mus musculus... 46 1.6 1
(BM248795) K0822E02-3 NIA Mouse 8.5-dpc Whole Embryo cDNA Li... 46 1.6 1
(BM248755) K0821H10-3 NIA Mouse 8.5-dpc Whole Embryo cDNA Li... 46 1.6 1
(BM227760) K0248F07-3 NIA Mouse Unfertilized Egg cDNA Librar... 46 1.6 1
(BM227158) K0239B05-3 NIA Mouse Unfertilized Egg cDNA Librar... 46 1.6 1
(BM226484) K0228G06-3 NIA Mouse Unfertilized Egg cDNA Librar... 46 1.6 1
(BM226340) K0226F08-3 NIA Mouse Unfertilized Egg cDNA Librar... 46 1.6 1
(BG082196) H3073E08-5 NIA Mouse 15K cDNA Clone Set Mus muscu... 46 1.6 1
(AA549650) vk80g05.s1 Knowles Solter mouse 2 cell Mus muscul... 46 1.6 1
(AA517495) vh92a11.r1 Knowles Solter mouse embryonic stem ce... 46 1.6 1
(BB705606) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB703003) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB701337) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB701281) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB701168) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB701107) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB699089) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 46 1.6 1
(BB678859) Mus musculus 1 day pregnant adult female mammary ... 46 1.6 1
(BB667071) Mus musculus adult male tongue cDNA, RIKEN full-l... 46 1.6 1
(AW558171) L0291E07-3 NIA Mouse Newborn Ovary cDNA Library M... 46 1.6 1
(AA438101) vd22d06.s1 Knowles Solter mouse 2 cell Mus muscul... 46 1.6 1
(AA438100) vd22d05.s1 Knowles Solter mouse 2 cell Mus muscul... 46 1.6 1
(AA185922) mu54f03.r1 Soares mouse lymph node NbMLN Mus musc... 46 1.6 1
(AA176049) mt01d02.r1 Soares mouse 3NbMS Mus musculus cDNA c... 46 1.6 1
(FB571377) Sequence 244 from Patent EP1865317. 34 1.8 6
(AC099435) Rattus norvegicus clone CH230-97E3, *** SEQUENCIN... 42 2.7 2
(CZ717264) OC__Ba0041G12.r OC__Ba Oryza coarctata genomic cl... 36 3.1 3
(BZ825262) PUFFY88TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 36 3.3 2
(BZ825255) PUFFY88TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 36 3.6 2
(EK043103) 1092959532751 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.6 3
(AY074707) Bacillus thuringiensis strain S101 Vip3A (vip3A) ... 32 3.9 2
(DX525216) GH_MBb0029K24f GH_MBb Gossypium hirsutum genomic ... 42 4.1 2
(DN892901) nao29e01.y1 Zebrafish Posterior segment. Unnormal... 34 4.1 2
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ... 40 4.5 7
(BD452653) Diagnosis of Diseases Associated with tumor suppr... 44 4.8 2
(AX345727) Sequence 798 from Patent WO0200928. 44 4.8 2
(AX251132) Sequence 100 from Patent WO0168912. 44 4.8 2
(BX640501) Zebrafish DNA sequence from clone CH211-117O11 in... 40 5.0 2
(AC194657) Pan troglodytes BAC clone CH251-363I12 from chrom... 44 6.3 1
(AP006662) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 6.3 1
(AP000421) Arabidopsis thaliana genomic DNA, chromosome 5, B... 44 6.3 1
(AM480653) Vitis vinifera contig VV78X098421.3, whole genome... 44 6.3 1
(AM473864) Vitis vinifera contig VV78X120474.13, whole genom... 44 6.3 1
(AM462046) Vitis vinifera, whole genome shotgun sequence, co... 44 6.3 1
(AM457253) Vitis vinifera contig VV78X070019.1, whole genome... 44 6.3 1
(AM452490) Vitis vinifera contig VV78X125231.4, whole genome... 44 6.3 1
(AM433447) Vitis vinifera contig VV78X093248.2, whole genome... 44 6.3 1
(AF058825) Arabidopsis thaliana BAC F7N22. 44 6.3 1
(DD010735) Diagnosis of known genetic Parameters within the ... 44 6.3 1
(AX344551) Sequence 2 from Patent WO0200932. 44 6.3 1
(AL121823) Human DNA sequence from clone RP13-212L9 on chrom... 44 6.3 1
(AC010142) Homo sapiens BAC clone RP11-240N18 from Y, comple... 44 6.3 1
(AC127716) Rattus norvegicus clone CH230-21L7, WORKING DRAFT... 44 6.3 1
(AC095286) Rattus norvegicus clone CH230-12C16, WORKING DRAF... 44 6.3 1
(AC206106) Saccoglossus kowalevskii clone CUGI_SK_BA 001A21,... 44 6.3 1
(FI217292) CccaBa041-O2TR CccABa Cajanus cajan genomic clone... 44 6.3 1
(EK059177) 1092960060667 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.3 1
(DN566774) 90211395 Sea Urchin primary mesenchyme cell cDNA ... 44 6.3 1
(AA692255) vr52b06.s1 Knowles Solter mouse 2 cell Mus muscul... 44 6.3 1
(AP000522) Homo sapiens genomic DNA, chromosome 22q11.2, Cat... 42 7.5 2
(AC079078) Homo sapiens chromosome UNK clone RP11-44P12, ***... 36 7.9 5
(AC132115) Mus musculus BAC clone RP24-146A13 from 1, comple... 34 8.5 4
(FB571321) Sequence 188 from Patent EP1865317. 34 9.8 5

>(AU037987) Dictyostelium discoideum slug cDNA, clone SSH128.
Length = 620

Score = 1207 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Plus


Query: 1 tcacccccaatttcatgatatggttagtaaatttaacggaatgggcacgttggacatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacccccaatttcatgatatggttagtaaatttaacggaatgggcacgttggacatctt 60


Query: 61 cagagattttgtcaaaagagaaattggttgaaagagttgtcactttatcattctttatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagagattttgtcaaaagagaaattggttgaaagagttgtcactttatcattctttatcg 120


Query: 121 atttagcaaagagttgtgtagagttgggtaactataatgctgccaatgcaatcgttggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttagcaaagagttgtgtagagttgggtaactataatgctgccaatgcaatcgttggtg 180


Query: 181 gtttgaatcattcttcaatctctcgtttgaaattgacttgggaaagattatcaacaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttgaatcattcttcaatctctcgtttgaaattgacttgggaaagattatcaacaaagg 240


Query: 241 tcacccaagattatgatcgtctattgtcattattcgatctttcaatgaattataagaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcacccaagattatgatcgtctattgtcattattcgatctttcaatgaattataagaatt 300


Query: 301 atcgtgacgaaattaaatctaccaaagcaaagattataccttatcttggtttattcccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcgtgacgaaattaaatctaccaaagcaaagattataccttatcttggtttattcccaa 360


Query: 361 aggatttaattgcaattgaagagggtaatgataattttacaaataataatctaattaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggatttaattgcaattgaagagggtaatgataattttacaaataataatctaattaata 420


Query: 421 ctgagaaattccgtttactttatcaaactattaaaaagattcaatcttatcaacaaccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgagaaattccgtttactttatcaaactattaaaaagattcaatcttatcaacaaccac 480


Query: 481 ttttcacttttaaaacttctgaaccaattaaacaatatcttaaaaatatttcaaatggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttcacttttaaaacttctgaaccaattaaacaatatcttaaaaatatttcaaatggtt 540


Query: 541 tatcagaagaaaaagatttccattcaattagtcataaacttgaaccaagacaacaacaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatcagaagaaaaagatttccattcaattagtcataaacttgaaccaagacaacaacaaa 600


Query: 601 ctcaataag 609
|||||||||
Sbjct: 601 ctcaataag 609

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 812,046,429
Number of extensions: 49912411
Number of successful extensions: 4191441
Number of sequences better than 10.0: 167
Length of query: 619
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 596
Effective length of database: 99,442,330,388
Effective search space: 59267628911248
Effective search space used: 59267628911248
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04054-1 (Contig-U04054-1Q) /CSM_Contig/Contig-U04054-1Q.Seq.d
(619 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY160093_1(AY160093|pid:none) Dictyostelium discoideum nucleotid... 353 3e-96
AC116986_28(AC116986|pid:none) Dictyostelium discoideum chromoso... 104 2e-21
AY160099_1(AY160099|pid:none) Dictyostelium discoideum nucleotid... 102 9e-21
AY160100_1(AY160100|pid:none) Dictyostelium discoideum nucleotid... 100 4e-20
AK122234_1(AK122234|pid:none) Mus musculus mRNA for mKIAA0277 pr... 100 4e-20
AF474377_1(AF474377|pid:none) Dictyostelium discoideum Ras GTP e... 100 4e-20
AK030016_1(AK030016|pid:none) Mus musculus adult male testis cDN... 100 4e-20
AK083591_1(AK083591|pid:none) Mus musculus 9 days embryo whole b... 100 4e-20
(P83900) RecName: Full=Rap guanine nucleotide exchange factor 5;... 100 6e-20
AY160098_1(AY160098|pid:none) Dictyostelium discoideum nucleotid... 99 1e-19
BC040183_1(BC040183|pid:none) Homo sapiens Rap guanine nucleotid... 99 1e-19
AY254473_1(AY254473|pid:none) Dictyostelium discoideum nucleotid... 99 1e-19
AC117082_5(AC117082|pid:none) Dictyostelium discoideum chromosom... 98 2e-19
CS416351_1(CS416351|pid:none) Sequence 3 from Patent WO200609470... 98 2e-19
AK296340_1(AK296340|pid:none) Homo sapiens cDNA FLJ58368 complet... 98 2e-19
AK304278_1(AK304278|pid:none) Homo sapiens cDNA FLJ51189 complet... 98 2e-19
BC024004_1(BC024004|pid:none) Homo sapiens Rap guanine nucleotid... 98 2e-19
AK316014_1(AK316014|pid:none) Homo sapiens cDNA, FLJ78913 comple... 98 2e-19
AB075513_1(AB075513|pid:none) Homo sapiens neuroblastoma cDNA, c... 98 2e-19
(Q8WZA2) RecName: Full=Rap guanine nucleotide exchange factor 4;... 98 2e-19
AK029995_1(AK029995|pid:none) Mus musculus adult male testis cDN... 97 3e-19
A75965_1(A75965|pid:none) Sequence 1 from Patent WO9321314. 96 6e-19
AB385192_1(AB385192|pid:none) Synthetic construct DNA, clone: pF... 96 6e-19
D87467_1(D87467|pid:none) Homo sapiens mRNA for KIAA0277 gene, p... 96 6e-19
AK220281_1(AK220281|pid:none) Mus musculus mRNA for mKIAA4040 pr... 96 8e-19
(Q9EQZ6) RecName: Full=Rap guanine nucleotide exchange factor 4;... 96 8e-19
AB445011_1(AB445011|pid:none) Mus musculus cAMP-GEFII mRNA for c... 96 8e-19
AB037668_1(AB037668|pid:none) Mus musculus Epac2 mRNA for cAMP-G... 96 8e-19
AX027844_1(AX027844|pid:none) Sequence 1 from Patent WO0040718. 96 1e-18
BC091317_1(BC091317|pid:none) Rattus norvegicus RAS protein-spec... 95 1e-18
AF094691_1(AF094691|pid:none) Mus musculus guanine nucleotide re... 95 2e-18
AK135070_1(AK135070|pid:none) Mus musculus adult male olfactory ... 95 2e-18
X59868_1(X59868|pid:none) M.musculus CDC25Mm mRNA for guanine nu... 95 2e-18
BX004769_1(BX004769|pid:none) Zebrafish DNA sequence from clone ... 94 3e-18
AY160105_1(AY160105|pid:none) Dictyostelium discoideum nucleotid... 94 4e-18
(Q8IV61) RecName: Full=Ras guanyl-releasing protein 3; AltName: ... 94 4e-18
AK292983_1(AK292983|pid:none) Homo sapiens cDNA FLJ77595 complet... 94 4e-18
AK173041_1(AK173041|pid:none) Mus musculus mRNA for mKIAA0846 pr... 93 5e-18
AC115682_8(AC115682|pid:none) Dictyostelium discoideum chromosom... 93 7e-18
BC119832_1(BC119832|pid:none) Bos taurus RAS guanyl releasing pr... 92 9e-18
AB384012_1(AB384012|pid:none) Synthetic construct DNA, clone: pF... 92 2e-17
AJ720845_1(AJ720845|pid:none) Gallus gallus mRNA for hypothetica... 92 2e-17
(P70392) RecName: Full=Ras-specific guanine nucleotide-releasing... 91 2e-17
AB154824_1(AB154824|pid:none) Mus musculus mRNA for RasGRP3, com... 91 3e-17
(A2CEA7) RecName: Full=Ras-specific guanine nucleotide-releasing... 91 3e-17
(Q99JE4) RecName: Full=Ras-specific guanine nucleotide-releasing... 91 3e-17
(Q9Z1C7) RecName: Full=Rap guanine nucleotide exchange factor 4;... 91 3e-17
AF023130_1(AF023130|pid:none) Homo sapiens Ras-GRF2 mRNA, partia... 90 4e-17
CQ834804_1(CQ834804|pid:none) Sequence 675 from Patent WO2004058... 90 4e-17
(O14827) RecName: Full=Ras-specific guanine nucleotide-releasing... 90 4e-17
AF109312_1(AF109312|pid:none) Mus musculus guanine nucleotide re... 90 6e-17
CR858031_1(CR858031|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 90 6e-17
AM920436_178(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 89 8e-17
AC115592_17(AC115592|pid:none) Dictyostelium discoideum chromoso... 89 1e-16
(Q6DBW1) RecName: Full=Ras-GEF domain-containing family member 1... 89 1e-16
(Q32N25) RecName: Full=RAS guanyl-releasing protein 2-A; &BC108... 87 4e-16
U58746_7(U58746|pid:none) Caenorhabditis elegans cosmid R05G6, c... 86 1e-15
CU633900_651(CU633900|pid:none) Podospora anserina genomic DNA c... 86 1e-15
T29361(T29361)hypothetical protein R05G6.10 - Caenorhabditis ele... 86 1e-15
AE013599_2480(AE013599|pid:none) Drosophila melanogaster chromos... 85 2e-15
CR382124_382(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 85 2e-15
AE016817_362(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 84 2e-15
(Q0VAM2) RecName: Full=Ras-GEF domain-containing family member 1... 84 4e-15
BC121004_1(BC121004|pid:none) Homo sapiens RasGEF domain family,... 84 4e-15
AK295616_1(AK295616|pid:none) Homo sapiens cDNA FLJ61275 complet... 84 4e-15
AK303625_1(AK303625|pid:none) Homo sapiens cDNA FLJ50337 complet... 84 4e-15
(Q5RC04) RecName: Full=Ras-GEF domain-containing family member 1B; 84 4e-15
CR858478_1(CR858478|pid:none) Pongo abelii mRNA; cDNA DKFZp469N2... 84 4e-15
(Q8JZL7) RecName: Full=Ras-GEF domain-containing family member 1... 84 4e-15
AX460077_1(AX460077|pid:none) Sequence 1 from Patent WO0218577. 84 4e-15
BC121003_1(BC121003|pid:none) Homo sapiens RasGEF domain family,... 84 4e-15
AL590963_1(AL590963|pid:none) Mouse DNA sequence from clone RP23... 83 5e-15
BC080279_1(BC080279|pid:none) Mus musculus Rap guanine nucleotid... 83 5e-15
(Q5R9B2) RecName: Full=Rap guanine nucleotide exchange factor-li... 83 5e-15
AM920437_1749(AM920437|pid:none) Penicillium chrysogenum Wiscons... 83 7e-15
AE013599_215(AE013599|pid:none) Drosophila melanogaster chromoso... 83 7e-15
AE013599_216(AE013599|pid:none) Drosophila melanogaster chromoso... 83 7e-15
AY149915_1(AY149915|pid:none) Ustilago maydis guanyl nucleotide ... 83 7e-15
BC124563_1(BC124563|pid:none) Xenopus tropicalis hypothetical pr... 83 7e-15
BC144627_1(BC144627|pid:none) Homo sapiens Rap guanine nucleotid... 82 9e-15
AL607091_4(AL607091|pid:none) Mouse DNA sequence from clone RP23... 82 9e-15
AF394782_1(AF394782|pid:none) Homo sapiens rap guanine nucleotid... 82 9e-15
AY160092_1(AY160092|pid:none) Dictyostelium discoideum nucleotid... 82 9e-15
CR382130_894(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 82 2e-14
(A4IFE4) RecName: Full=Ras-GEF domain-containing family member 1... 82 2e-14
(Q9UHV5) RecName: Full=Rap guanine nucleotide exchange factor-li... 81 2e-14
AF117946_1(AF117946|pid:none) Homo sapiens Link guanine nucleoti... 81 2e-14
AC074344_1(AC074344|pid:none) Homo sapiens BAC clone RP11-138A23... 81 2e-14
AK294459_1(AK294459|pid:none) Homo sapiens cDNA FLJ61094 partial... 81 2e-14
AK294642_1(AK294642|pid:none) Homo sapiens cDNA FLJ58529 complet... 81 2e-14
AB002311_1(AB002311|pid:none) Homo sapiens mRNA for KIAA0313 gen... 81 2e-14
AL929533_2(AL929533|pid:none) Zebrafish DNA sequence from clone ... 81 2e-14
AL645913_2(AL645913|pid:none) Mouse DNA sequence from clone RP23... 81 3e-14
AK093160_1(AK093160|pid:none) Homo sapiens cDNA FLJ35841 fis, cl... 81 3e-14
BC036802_1(BC036802|pid:none) Homo sapiens RasGEF domain family,... 81 3e-14
(Q8N431) RecName: Full=Ras-GEF domain-containing family member 1... 81 3e-14
(Q9D300) RecName: Full=Ras-GEF domain-containing family member 1... 81 3e-14
BC055678_1(BC055678|pid:none) Danio rerio RasGEF domain family, ... 81 3e-14
AK304160_1(AK304160|pid:none) Homo sapiens cDNA FLJ56384 complet... 80 4e-14
(Q28EC1) RecName: Full=Ras-GEF domain-containing family member 1... 80 4e-14
AF275723_1(AF275723|pid:none) Dictyostelium discoideum Ras guani... 80 4e-14
(Q95KH6) RecName: Full=Ras-GEF domain-containing family member 1... 80 5e-14
AP007162_207(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 80 6e-14
AE017353_159(AE017353|pid:none) Cryptococcus neoformans var. neo... 79 8e-14
U53884_1(U53884|pid:none) Dictyostelium discoideum aimless RasGE... 79 1e-13
AK143331_1(AK143331|pid:none) Mus musculus 2 days pregnant adult... 79 1e-13
AF478567_1(AF478567|pid:none) Homo sapiens PDZ domain-containing... 79 1e-13
AK302640_1(AK302640|pid:none) Homo sapiens cDNA FLJ53249 complet... 79 1e-13
BC025553_1(BC025553|pid:none) Mus musculus Rap guanine nucleotid... 79 1e-13
AY160090_1(AY160090|pid:none) Dictyostelium discoideum nucleotid... 79 1e-13
AF081193_1(AF081193|pid:none) Mus musculus calcium and DAG-regul... 79 1e-13
AL607091_5(AL607091|pid:none) Mouse DNA sequence from clone RP23... 79 1e-13
AL596127_16(AL596127|pid:none) Mouse DNA sequence from clone RP2... 79 1e-13
(P0C643) RecName: Full=RAS guanyl-releasing protein 2; AltName: ... 79 1e-13
EU362913_1(EU362913|pid:none) Drosophila melanogaster dizzy isof... 79 1e-13
AP007157_830(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 79 1e-13
(Q9QUG9) RecName: Full=RAS guanyl-releasing protein 2; AltName: ... 79 1e-13
(Q6NTL4) RecName: Full=RAS guanyl-releasing protein 1; &BC06894... 79 1e-13
AE014134_1119(AE014134|pid:none) Drosophila melanogaster chromos... 79 1e-13
EU362915_1(EU362915|pid:none) Drosophila melanogaster dizzy isof... 79 1e-13
BC110306_1(BC110306|pid:none) Homo sapiens RAS guanyl releasing ... 78 2e-13
AK092882_1(AK092882|pid:none) Homo sapiens cDNA FLJ35563 fis, cl... 78 2e-13
AF043722_1(AF043722|pid:none) Homo sapiens guanine exchange fact... 78 2e-13
BT044818_1(BT044818|pid:none) Salmo salar clone ssal-rgf-504-236... 78 2e-13
AE014296_3925(AE014296|pid:none) Drosophila melanogaster chromos... 78 2e-13
(Q1LZ97) RecName: Full=RAS guanyl-releasing protein 4; &BC11613... 78 2e-13
FN357308_23(FN357308|pid:none) Schistosoma mansoni genome sequen... 77 3e-13
AE014298_984(AE014298|pid:none) Drosophila melanogaster chromoso... 76 7e-13
AE014298_987(AE014298|pid:none) Drosophila melanogaster chromoso... 76 7e-13
AE014298_985(AE014298|pid:none) Drosophila melanogaster chromoso... 76 7e-13
AE014298_983(AE014298|pid:none) Drosophila melanogaster chromoso... 76 7e-13
AF053358_1(AF053358|pid:none) Drosophila melanogaster guanine nu... 76 7e-13
(O77086) RecName: Full=Guanine nucleotide-releasing factor 2; Al... 76 7e-13
BT025818_1(BT025818|pid:none) Drosophila melanogaster IP03271 fu... 76 7e-13
(A4IJ06) RecName: Full=RAS guanyl-releasing protein 1; &BC13622... 76 7e-13
(A6N9I4) RecName: Full=RAS guanyl-releasing protein 2; AltName: ... 76 9e-13
FN357914_21(FN357914|pid:none) Schistosoma mansoni genome sequen... 75 1e-12
AL031966_1(AL031966|pid:none) S.pombe chromosome III cosmid c1442. 75 1e-12
AK314091_1(AK314091|pid:none) Homo sapiens cDNA, FLJ94771, highl... 75 2e-12
AB208848_1(AB208848|pid:none) Homo sapiens mRNA for Ras activato... 75 2e-12
AF081197_1(AF081197|pid:none) Homo sapiens calcium and DAG-regul... 75 2e-12
(Q9UI94) RecName: Full=RAS guanyl-releasing protein 1; AltName: ... 75 2e-12
BC161641_1(BC161641|pid:none) Xenopus tropicalis hypothetical pr... 75 2e-12
FN357603_14(FN357603|pid:none) Schistosoma mansoni genome sequen... 75 2e-12
AY858556_1(AY858556|pid:none) Homo sapiens RAS guanyl releasing ... 75 2e-12
AF081195_1(AF081195|pid:none) Homo sapiens calcium and DAG-regul... 75 2e-12
AY954625_1(AY954625|pid:none) Homo sapiens Ras guanyl releasing ... 75 2e-12
AF312924_1(AF312924|pid:none) Mus musculus Ral-A exchange factor... 74 3e-12
(Q4R7W3) RecName: Full=Ras-specific guanine nucleotide-releasing... 74 3e-12
AK018622_1(AK018622|pid:none) Mus musculus adult male cecum cDNA... 74 3e-12
AK036803_1(AK036803|pid:none) Mus musculus adult female vagina c... 74 3e-12
AK033549_1(AK033549|pid:none) Mus musculus adult male colon cDNA... 74 3e-12
(Q5ZJK0) RecName: Full=Ras-specific guanine nucleotide-releasing... 74 3e-12
AK029049_1(AK029049|pid:none) Mus musculus 10 days neonate skin ... 74 3e-12
AM270066_3(AM270066|pid:none) Aspergillus niger contig An04c0050... 74 3e-12
(Q86X27) RecName: Full=Ras-specific guanine nucleotide-releasing... 74 3e-12
AK169368_1(AK169368|pid:none) Mus musculus 17 days pregnant adul... 74 3e-12
(Q9ERD6) RecName: Full=Ras-specific guanine nucleotide-releasing... 74 3e-12
CU928180_398(CU928180|pid:none) Kluyveromyces thermotolerans str... 74 4e-12
BC022548_1(BC022548|pid:none) Homo sapiens RasGEF domain family,... 73 6e-12
BT020843_1(BT020843|pid:none) Bos taurus RasGEF domain family, m... 73 6e-12
AY582133_1(AY582133|pid:none) Xenopus laevis Rap1 guanine-nucleo... 73 6e-12
AF441482_1(AF441482|pid:none) Homo sapiens alternate SOS1 (SOS1)... 73 6e-12
AK095136_1(AK095136|pid:none) Homo sapiens cDNA FLJ37817 fis, cl... 73 6e-12
AC019171_1(AC019171|pid:none) Homo sapiens BAC clone RP11-173C1 ... 73 6e-12
(Q07889) RecName: Full=Son of sevenless homolog 1; Shor... 73 6e-12
A37488(A37488)Ras guanine nucleotide exchange factor son-of-seve... 73 6e-12
AB209140_1(AB209140|pid:none) Homo sapiens mRNA for son of seven... 73 6e-12
AL845277_3(AL845277|pid:none) Mouse DNA sequence from clone RP23... 73 7e-12
BC072656_1(BC072656|pid:none) Mus musculus Ral GEF with PH domai... 73 7e-12
AY902349_1(AY902349|pid:none) Mus musculus strain CAST/EiJ son o... 73 7e-12
CR380950_274(CR380950|pid:none) Candida glabrata strain CBS138 c... 73 7e-12
CP000502_107(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 73 7e-12
(Q62245) RecName: Full=Son of sevenless homolog 1; Shor... 73 7e-12
S25716(S25716;S21391) Ras guanine nucleotide exchange factor son... 73 7e-12
AK140310_1(AK140310|pid:none) Mus musculus adult male adrenal gl... 73 7e-12
AL845277_5(AL845277|pid:none) Mouse DNA sequence from clone RP23... 73 7e-12
AF094679_1(AF094679|pid:none) Mus musculus Sos1 gene, exon and p... 73 7e-12
AK129123_1(AK129123|pid:none) Mus musculus mRNA for mKIAA0351 pr... 73 7e-12
AK001106_1(AK001106|pid:none) Homo sapiens cDNA FLJ10244 fis, cl... 72 1e-11
AK147696_1(AK147696|pid:none) Mus musculus cDNA, RIKEN full-leng... 72 1e-11
JC7736(JC7736)C3G protein, long type - mouse 72 1e-11
BC118719_1(BC118719|pid:none) Xenopus tropicalis hypothetical pr... 72 1e-11
AK141524_1(AK141524|pid:none) Mus musculus adult male hippocampu... 72 1e-11
BC129881_1(BC129881|pid:none) Mus musculus Rap guanine nucleotid... 72 1e-11
AK077034_1(AK077034|pid:none) Mus musculus adult male testis cDN... 72 1e-11
(A0JM95) RecName: Full=Ras-GEF domain-containing family member 1... 72 1e-11
AK147468_1(AK147468|pid:none) Mus musculus adult male brain UNDE... 72 1e-11
AK158756_1(AK158756|pid:none) Mus musculus visual cortex cDNA, R... 72 1e-11
BC138284_1(BC138284|pid:none) Mus musculus RasGEF domain family,... 72 1e-11
A75969_1(A75969|pid:none) Sequence 5 from Patent WO9321314. 72 1e-11
BC074379_1(BC074379|pid:none) Xenopus laevis MGC84301 protein, m... 72 1e-11
BC145232_1(BC145232|pid:none) Mus musculus RasGEF domain family,... 72 1e-11
BT015294_1(BT015294|pid:none) Drosophila melanogaster GH01796 fu... 72 2e-11
AF060819_1(AF060819|pid:none) Rattus norvegicus ras guanyl relea... 72 2e-11
AC117080_21(AC117080|pid:none) Dictyostelium discoideum chromoso... 72 2e-11
(P26675) RecName: Full=Protein son of sevenless; &A41216(A41216... 72 2e-11
(Q9R1K8) RecName: Full=RAS guanyl-releasing protein 1; AltName: ... 72 2e-11
(Q55EC7) RecName: Full=RasGEF domain-containing serine/threonine... 72 2e-11
AY160103_1(AY160103|pid:none) Dictyostelium discoideum nucleotid... 72 2e-11
M83931_1(M83931|pid:none) Drosophila melanogaster son of sevenle... 72 2e-11
AB385202_1(AB385202|pid:none) Synthetic construct DNA, clone: pF... 71 2e-11
AL160169_2(AL160169|pid:none) Human DNA sequence from clone RP11... 71 2e-11
AL160169_5(AL160169|pid:none) Human DNA sequence from clone RP11... 71 2e-11
BC041710_1(BC041710|pid:none) Homo sapiens Rap guanine nucleotid... 71 2e-11
AK165106_1(AK165106|pid:none) Mus musculus 2 days pregnant adult... 71 2e-11
BC125684_1(BC125684|pid:none) Xenopus tropicalis Rap guanine nuc... 71 2e-11
AK162667_1(AK162667|pid:none) Mus musculus adult male bone cDNA,... 71 2e-11
AL160276_3(AL160276|pid:none) Human DNA sequence from clone RP11... 71 2e-11
(Q9NZ16) RecName: Full=Ras-specific guanine nucleotide-releasing... 71 2e-11
(Q8BTM9) RecName: Full=RAS guanyl-releasing protein 4; &AK08928... 71 2e-11
AY040628_1(AY040628|pid:none) Mus musculus RAS guanyl releasing ... 71 2e-11
BC032372_1(BC032372|pid:none) Homo sapiens Ral GEF with PH domai... 71 2e-11
(Q8R5I4) RecName: Full=RAS guanyl-releasing protein 4; &AF46526... 71 3e-11
AX556884_1(AX556884|pid:none) Sequence 1 from Patent WO0240656. 71 3e-11
S25714(S25714) son-of-sevenless-2 protein - mouse (fragment) &Z... 71 3e-11
FJ768681_1(FJ768681|pid:none) Homo sapiens RAS guanyl releasing ... 71 3e-11
AF465264_1(AF465264|pid:none) Rattus norvegicus ras guanine nucl... 71 3e-11
(Q8TDF6) RecName: Full=RAS guanyl-releasing protein 4; &AF44843... 71 3e-11
(Q02384) RecName: Full=Son of sevenless homolog 2; Shor... 71 3e-11
AK299149_1(AK299149|pid:none) Homo sapiens cDNA FLJ61342 complet... 70 5e-11
BC166138_1(BC166138|pid:none) Xenopus tropicalis Rap guanine nuc... 70 5e-11
BC020532_1(BC020532|pid:none) Mus musculus Rap guanine nucleotid... 70 5e-11
AK034265_1(AK034265|pid:none) Mus musculus adult male diencephal... 70 5e-11
BC020311_1(BC020311|pid:none) Mus musculus Rap guanine nucleotid... 70 5e-11
AK142594_1(AK142594|pid:none) Mus musculus 10 days lactation, ad... 70 5e-11
(Q8VCC8) RecName: Full=Rap guanine nucleotide exchange factor 3;... 70 5e-11
CS416355_1(CS416355|pid:none) Sequence 7 from Patent WO2006094703. 70 6e-11
BC017728_1(BC017728|pid:none) Homo sapiens Rap guanine nucleotid... 70 6e-11
AK125545_1(AK125545|pid:none) Homo sapiens cDNA FLJ43557 fis, cl... 70 6e-11
EF636666_1(EF636666|pid:none) Canis lupus familiaris exchange pr... 70 6e-11
(P04821) RecName: Full=Cell division control protein 25; &GN103... 70 6e-11
(O95398) RecName: Full=Rap guanine nucleotide exchange factor 3;... 70 6e-11
BC092404_1(BC092404|pid:none) Homo sapiens Rap guanine nucleotid... 70 6e-11
BC143367_1(BC143367|pid:none) Homo sapiens son of sevenless homo... 69 8e-11
AB209277_1(AB209277|pid:none) Homo sapiens mRNA for son of seven... 69 8e-11
BC055185_1(BC055185|pid:none) Danio rerio Ral-A exchange factor ... 69 8e-11
AY048119_1(AY048119|pid:none) Homo sapiens RAS guanyl releasing ... 69 1e-10
AF170796_1(AF170796|pid:none) Caenorhabditis elegans RA-GEF (ra-... 69 1e-10
AY048121_1(AY048121|pid:none) Homo sapiens RAS guanyl releasing ... 69 1e-10
AF308449_1(AF308449|pid:none) Caenorhabditis elegans PXF isoform... 69 1e-10
AL669999_10(AL669999|pid:none) Neurospora crassa DNA linkage gro... 69 1e-10
BC131870_1(BC131870|pid:none) Danio rerio zgc:158274, mRNA (cDNA... 69 1e-10
AE017356_184(AE017356|pid:none) Cryptococcus neoformans var. neo... 69 1e-10
T21321(T21321)hypothetical protein F25B3.3 - Caenorhabditis eleg... 69 1e-10
Z70752_2(Z70752|pid:none) Caenorhabditis elegans Cosmid F25B3, c... 69 1e-10
FM992690_366(FM992690|pid:none) Candida dubliniensis CD36 chromo... 68 2e-10
AY810144_1(AY810144|pid:none) Schistosoma japonicum SJCHGC07188 ... 68 2e-10
A75971_1(A75971|pid:none) Sequence 7 from Patent WO9321314. 67 3e-10
L20686_1(L20686|pid:none) Homo sapiens guanine nucleotide releas... 67 3e-10
(P43069) RecName: Full=Cell division control protein 25; &GN103... 67 5e-10
AL845277_2(AL845277|pid:none) Mouse DNA sequence from clone RP23... 67 5e-10
AM269957_6(AM269957|pid:none) Aspergillus niger contig An01c0100... 67 5e-10
FJ768679_1(FJ768679|pid:none) Homo sapiens RAS guanyl releasing ... 66 9e-10
(B0UXH6) RecName: Full=Ras-specific guanine nucleotide-releasing... 66 9e-10
BC146736_1(BC146736|pid:none) Danio rerio Ral GEF with PH domain... 66 9e-10
AC116987_20(AC116987|pid:none) Dictyostelium discoideum chromoso... 66 9e-10
AF321469_1(AF321469|pid:none) Yarrowia lipolytica Ras guanine-nu... 65 1e-09
AK028308_1(AK028308|pid:none) Mus musculus adult male brain cDNA... 65 2e-09
BC057759_1(BC057759|pid:none) Homo sapiens RasGEF domain family,... 63 8e-09
CU638743_770(CU638743|pid:none) Podospora anserina genomic DNA c... 62 2e-08
FM992695_606(FM992695|pid:none) Candida dubliniensis CD36 chromo... 61 2e-08
(Q9USU1) RecName: Full=Ras guanine nucleotide exchange factor ef... 61 2e-08
GN110865_1(GN110865|pid:none) Sequence 15646 from Patent WO20090... 60 4e-08
(P14771) RecName: Full=Guanine nucleotide exchange factor SDC25; 60 4e-08
M26647_1(M26647|pid:none) Saccharomyces cerevisiae SDC25 gene, c... 60 4e-08
GN103733_1(GN103733|pid:none) Sequence 8514 from Patent WO200903... 60 4e-08
AC024755_6(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 59 8e-08
BT010019_1(BT010019|pid:none) Drosophila melanogaster RE10624 fu... 59 1e-07
S14177(S14177;S12942;PS0040)SCD25 protein (version 1) - yeast (S... 58 2e-07
CR382131_1446(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 58 2e-07
AF053308_1(AF053308|pid:none) Drosophila affinis putative guanin... 58 2e-07
AY160104_1(AY160104|pid:none) Dictyostelium discoideum nucleotid... 57 3e-07
AC093747_1(AC093747|pid:none) Homo sapiens BAC clone RP11-29L8 f... 57 4e-07
U82163_1(U82163|pid:none) Oryctolagus cuniculus oncogene rsc mRN... 56 7e-07
BC143530_1(BC143530|pid:none) Homo sapiens ral guanine nucleotid... 55 2e-06
AY160095_1(AY160095|pid:none) Dictyostelium discoideum nucleotid... 55 2e-06
AK074082_1(AK074082|pid:none) Homo sapiens mRNA for FLJ00153 pro... 55 2e-06
FM992689_618(FM992689|pid:none) Candida dubliniensis CD36 chromo... 55 2e-06
AF027169_1(AF027169|pid:none) Homo sapiens Ral guanine nucleotid... 54 4e-06
AB037729_1(AB037729|pid:none) Homo sapiens mRNA for KIAA1308 pro... 54 4e-06
AK056462_1(AK056462|pid:none) Homo sapiens cDNA FLJ31900 fis, cl... 54 4e-06
AK074114_1(AK074114|pid:none) Homo sapiens mRNA for FLJ00185 pro... 54 4e-06
AK301470_1(AK301470|pid:none) Homo sapiens cDNA FLJ53221 complet... 54 4e-06
AK127524_1(AK127524|pid:none) Homo sapiens cDNA FLJ45617 fis, cl... 54 4e-06
AK293997_1(AK293997|pid:none) Homo sapiens cDNA FLJ55326 complet... 54 4e-06
CR382138_57(CR382138|pid:none) Debaryomyces hansenii strain CBS7... 54 4e-06
AK159754_1(AK159754|pid:none) Mus musculus osteoclast-like cell ... 53 6e-06
AK149644_1(AK149644|pid:none) Mus musculus bone marrow macrophag... 53 6e-06
CR861270_1(CR861270|pid:none) Pongo abelii mRNA; cDNA DKFZp459K0... 53 6e-06
AL772249_10(AL772249|pid:none) Mouse DNA sequence from clone RP2... 53 6e-06
(Q03385) RecName: Full=Ral guanine nucleotide dissociation stimu... 53 6e-06
AK141959_1(AK141959|pid:none) Mus musculus 12 days embryo spinal... 53 6e-06
(Q03386) RecName: Full=Ral guanine nucleotide dissociation stimu... 53 8e-06
(Q3UYI5) RecName: Full=Ral guanine nucleotide dissociation stimu... 53 8e-06
CR380948_48(CR380948|pid:none) Candida glabrata strain CBS138 ch... 53 8e-06
BC149035_1(BC149035|pid:none) Bos taurus ral guanine nucleotide ... 53 8e-06
AY365418_10(AY365418|pid:none) Epichloe festucae strain 1035.30 ... 53 8e-06
BX571854_2(BX571854|pid:none) Zebrafish DNA sequence from clone ... 52 1e-05
AK299029_1(AK299029|pid:none) Homo sapiens cDNA FLJ56134 complet... 52 1e-05
CP000499_444(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 52 1e-05
AC024755_7(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 52 2e-05
CR382137_925(CR382137|pid:none) Debaryomyces hansenii strain CBS... 51 2e-05
AK169430_1(AK169430|pid:none) Mus musculus 17 days pregnant adul... 51 2e-05
BC005037_1(BC005037|pid:none) Homo sapiens ral guanine nucleotid... 51 3e-05
U68142_1(U68142|pid:none) Human RalGDS-like 2 (RGL2) mRNA, parti... 51 3e-05
(O15211) RecName: Full=Ral guanine nucleotide dissociation stimu... 51 3e-05
AE017341_238(AE017341|pid:none) Cryptococcus neoformans var. neo... 50 4e-05
AF251308_1(AF251308|pid:none) Caenorhabditis elegans guanine nuc... 50 4e-05
AK097292_1(AK097292|pid:none) Homo sapiens cDNA FLJ39973 fis, cl... 50 4e-05
AC006692_9(AC006692|pid:none) Caenorhabditis elegans cosmid T28F... 50 4e-05
BC155690_1(BC155690|pid:none) Xenopus tropicalis hypothetical pr... 50 4e-05
BC047924_1(BC047924|pid:none) Homo sapiens kinase non-catalytic ... 50 4e-05
CU638744_132(CU638744|pid:none) Podospora anserina genomic DNA c... 50 4e-05
AE016819_863(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 50 5e-05
FJ768678_1(FJ768678|pid:none) Homo sapiens RAS guanyl releasing ... 50 7e-05
FN357907_3(FN357907|pid:none) Schistosoma mansoni genome sequenc... 50 7e-05
(Q8K4S1) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p... 49 1e-04
(Q99P84) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p... 49 1e-04
CR382123_145(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 49 1e-04
FJ768677_1(FJ768677|pid:none) Homo sapiens RAS guanyl releasing ... 48 3e-04
DQ246664_3(DQ246664|pid:none) Oncorhynchus mykiss SYPG1 (SYPG1),... 48 3e-04
BX640472_3(BX640472|pid:none) Zebrafish DNA sequence from clone ... 48 3e-04
AM989988_10(AM989988|pid:none) Zygosaccharomyces rouxii strain C... 48 3e-04
AB040949_1(AB040949|pid:none) Homo sapiens mRNA for KIAA1516 pro... 47 3e-04
AK147672_1(AK147672|pid:none) Mus musculus cDNA, RIKEN full-leng... 47 3e-04
AK147693_1(AK147693|pid:none) Mus musculus adult male brain UNDE... 47 3e-04
AF190642_1(AF190642|pid:none) Homo sapiens phosphoinositide-spec... 47 3e-04
AE014134_591(AE014134|pid:none) Drosophila melanogaster chromoso... 47 3e-04
(Q8BXJ3) RecName: Full=Protein very KIND; AltName: Full=Kinase n... 47 3e-04
AK147335_1(AK147335|pid:none) Mus musculus cDNA, RIKEN full-leng... 47 3e-04
AJ580324_1(AJ580324|pid:none) Mus musculus mRNA for Very KIND pr... 47 3e-04
AL139118_1(AL139118|pid:none) Human DNA sequence from clone RP11... 47 3e-04
AL139118_2(AL139118|pid:none) Human DNA sequence from clone RP11... 47 3e-04
BC150787_1(BC150787|pid:none) Mus musculus kinase non-catalytic ... 47 3e-04
(Q9UHV3) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p... 47 3e-04
BC040275_1(BC040275|pid:none) Homo sapiens Ras protein-specific ... 47 4e-04
AF032126_1(AF032126|pid:none) Drosophila melanogaster ral guanin... 47 6e-04
AE014296_2462(AE014296|pid:none) Drosophila melanogaster chromos... 47 6e-04
AE014296_2459(AE014296|pid:none) Drosophila melanogaster chromos... 47 6e-04
CR749239_1(CR749239|pid:none) Homo sapiens mRNA; cDNA DKFZp781H1... 46 7e-04
Z50740_3(Z50740|pid:none) Caenorhabditis elegans Cosmid F31B12, ... 46 7e-04
AF170071_1(AF170071|pid:none) Homo sapiens phospholipase C epsil... 46 7e-04
Z50740_4(Z50740|pid:none) Caenorhabditis elegans Cosmid F31B12, ... 46 7e-04
T21581(T21581)hypothetical protein F31B12.1 - Caenorhabditis ele... 46 7e-04
Z50740_6(Z50740|pid:none) Caenorhabditis elegans Cosmid F31B12, ... 46 7e-04
Z50740_1(Z50740|pid:none) Caenorhabditis elegans Cosmid F31B12, ... 46 7e-04
AF044576_1(AF044576|pid:none) Caenorhabditis elegans phospholipa... 46 7e-04
AJ720654_1(AJ720654|pid:none) Gallus gallus mRNA for hypothetica... 46 0.001
BX284747_19(BX284747|pid:none) Neurospora crassa DNA linkage gro... 46 0.001
AM920433_156(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 45 0.001
(Q8MVR1) RecName: Full=Cyclic GMP-binding protein C; EC... 44 0.003
D21354_1(D21354|pid:none) Saccharomyces cerevisiae gene for puta... 44 0.004
(P07866) RecName: Full=Guanine nucleotide exchange factor LTE1; ... 44 0.004
AK096811_1(AK096811|pid:none) Homo sapiens cDNA FLJ39492 fis, cl... 44 0.004
AF202722_1(AF202722|pid:none) Danio rerio ras-associated protein... 44 0.004
(Q75BH9) RecName: Full=Guanine nucleotide exchange factor LTE1; ... 43 0.008
EU919685_1(EU919685|pid:none) Danio rerio phospholipase C epsilo... 43 0.008
BC139712_1(BC139712|pid:none) Danio rerio similar to Ral guanine... 42 0.014
AX275027_1(AX275027|pid:none) Sequence 1 from Patent WO0175121. 42 0.014
AP007151_629(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.018
U42834_3(U42834|pid:none) Caenorhabditis elegans cosmid F28B4, c... 42 0.018
AK295611_1(AK295611|pid:none) Homo sapiens cDNA FLJ50530 complet... 41 0.024
AK316526_1(AK316526|pid:none) Homo sapiens cDNA, FLJ79425 comple... 41 0.024
AL590422_1(AL590422|pid:none) Human DNA sequence from clone RP11... 41 0.024
AF186798_1(AF186798|pid:none) Homo sapiens RalGDS-like (RGL) gen... 41 0.024
AK295179_1(AK295179|pid:none) Homo sapiens cDNA FLJ50518 complet... 41 0.024
AF186798_2(AF186798|pid:none) Homo sapiens RalGDS-like (RGL) gen... 41 0.024
(Q6FT12) RecName: Full=Guanine nucleotide exchange factor LTE1; ... 41 0.024
AK144218_1(AK144218|pid:none) Mus musculus CRL-2116 JC cDNA, RIK... 40 0.040
AK304293_1(AK304293|pid:none) Homo sapiens cDNA FLJ52394 complet... 39 0.090
EU272853_1(EU272853|pid:none) Borrelia garinii strain Ip89 CspZ ... 39 0.090
BC129006_1(BC129006|pid:none) Xenopus tropicalis hypothetical pr... 39 0.15
CU928168_88(CU928168|pid:none) Kluyveromyces thermotolerans stra... 38 0.20
AB010891_1(AB010891|pid:none) Halocynthia roretzi HrSH2 mRNA, co... 37 0.58
BC041733_1(BC041733|pid:none) Xenopus laevis SH2 domain containi... 36 1.00
AJ292961_1(AJ292961|pid:none) Zea mays mRNA for putative MADS-do... 35 2.2
CP000393_1013(CP000393|pid:none) Trichodesmium erythraeum IMS101... 35 2.2
AY456188_1(AY456188|pid:none) Pollicipes polymerus mitochondrion... 34 3.8
AP006841_953(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ... 34 3.8
CR626927_833(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ... 34 3.8
(Q9RDW6) RecName: Full=Xaa-Pro dipeptidyl-peptidase; EC... 34 3.8
DQ286057_1(DQ286057|pid:none) Hydra vulgaris myosin heavy chain ... 33 4.9
(P20457) RecName: Full=DNA primase large subunit; EC=2.... 33 6.5
AP003708_29(AP003708|pid:none) Oryza sativa Japonica Group genom... 33 6.5
(Q9QZS8) RecName: Full=SH2 domain-containing protein 3C; AltName... 33 8.4
CP000110_89(CP000110|pid:none) Synechococcus sp. CC9605, complet... 33 8.4

>AY160093_1(AY160093|pid:none) Dictyostelium discoideum nucleotide
exchange factor RasGEF D (gefD) gene, complete cds.
Length = 668

Score = 353 bits (905), Expect = 3e-96
Identities = 180/201 (89%), Positives = 182/201 (90%)
Frame = +3

Query: 3 TPNFMIWLVNLTEWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAIVGG 182
+P F + EWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAIVGG
Sbjct: 468 SPQFHDMVSKFNEWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAIVGG 527

Query: 183 LNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGLFPK 362
LNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGLFPK
Sbjct: 528 LNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGLFPK 587

Query: 363 DLIAIEEGXXXXXXXXXXXTEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNISNGL 542
DLIAIEEG TEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNISNGL
Sbjct: 588 DLIAIEEGNDNFTNNNLINTEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNISNGL 647

Query: 543 SEEKDFHSISHKLEPRQQQTQ 605
SEEKDFHSISHKLEPRQQQTQ
Sbjct: 648 SEEKDFHSISHKLEPRQQQTQ 668

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 923,289,496
Number of extensions: 15952054
Number of successful extensions: 39946
Number of sequences better than 10.0: 387
Number of HSP's gapped: 39806
Number of HSP's successfully gapped: 388
Length of query: 206
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 83
Effective length of database: 659,166,577
Effective search space: 54710825891
Effective search space used: 54710825891
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.91 gvh: 0.64 alm: 0.37 top: 0.47 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: extracellular, including cell wall
20.0 %: mitochondrial
16.0 %: nuclear
4.0 %: vacuolar

>> prediction for Contig-U04054-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0