Contig-U04047-1
Contig ID Contig-U04047-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04047-1 (Contig-U04047-1Q) /CSM_Contig/Contig-U04047-1Q.Seq.d
GGTTCAACTGCAAGTCATGCTGAAGGTGATCCACATAAATTATTATATAT
TTTTACAGGTATTATAGGTGCATTCTTTGGTGCAATCTCTTATATCGCAG
TGAGAAAGGTGGGTCCAAATGTGCATGCATTTGTATTGGTAACTTATTTC
TCTGGTTTAGCTTCACTAGTTACTTTTCCATCAGCTTTCATATTCCAAAC
TTTCAAATGGCCATCATTAAAAGCTTGGGGTTGGATTACATTAATGGGTG
TTTTTGGTACAGTTGCTCAAGGTGCAGTCAATAGAGGTATTCAATTGGAA
AAAGCTGCAAAAGCCGCTGCAATGAATTATCTTCAAATTATTTTTACATT
TATTTGGGAAATTACATTCCTCCATGAAACAATTGATTGGATAACATTAT
TAGCTGCTGGTTTAATTTTATCATGTGCTATTGTGACTGCCATAAGAAAA
TAAATTAATAATTAA

Gap no gap
Contig length 465
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 6096544
End point 6097009
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04047
List of clone(s)

est1=SLE604F,1,466
Translated Amino Acid sequence
GSTASHAEGDPHKLLYIFTGIIGAFFGAISYIAVRKVGPNVHAFVLVTYFSGLASLVTFP
SAFIFQTFKWPSLKAWGWITLMGVFGTVAQGAVNRGIQLEKAAKAAAMNYLQIIFTFIWE
ITFLHETIDWITLLAAGLILSCAIVTAIRK*inn*


Translated Amino Acid sequence (All Frames)
Frame A:
GSTASHAEGDPHKLLYIFTGIIGAFFGAISYIAVRKVGPNVHAFVLVTYFSGLASLVTFP
SAFIFQTFKWPSLKAWGWITLMGVFGTVAQGAVNRGIQLEKAAKAAAMNYLQIIFTFIWE
ITFLHETIDWITLLAAGLILSCAIVTAIRK*inn*


Frame B:
vqlqvmlkvihinyyiflqvl*vhslvqslisq*erwvqmcmhlyw*lislv*lh*llfh
qlsysklsnghh*klgvglh*wvflvqllkvqsievfnwkklqkplq*iifklflhlfgk
lhssmkqlig*hy*llv*fyhvll*lp*enklii


Frame C:
fncksc*r*st*iiiyfyryyrcilwcnllyrsekggskcacicignlflwfsftsyfsi
sfhipnfqmaiikslgldyingcfwyscsrcsq*rysigkscksrcnelssnyfyiylgn
yipp*nn*ldniiscwfnfimcycdchkkin**l


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U04047-1 (Contig-U04047-1Q)
/CSM_Contig/Contig-U04047-1Q.Seq.d
(465 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04047-1 (Contig-U04047-1Q) /CSM_Contig/Conti... 922 0.0
Contig-U13737-1 (Contig-U13737-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U10981-1 (Contig-U10981-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U04877-1 (Contig-U04877-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U14805-1 (Contig-U14805-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U12447-1 (Contig-U12447-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U05903-1 (Contig-U05903-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U14144-1 (Contig-U14144-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti... 34 0.13

>Contig-U04047-1 (Contig-U04047-1Q) /CSM_Contig/Contig-U04047-1Q.Seq.d
Length = 465

Score = 922 bits (465), Expect = 0.0
Identities = 465/465 (100%)
Strand = Plus / Plus


Query: 1 ggttcaactgcaagtcatgctgaaggtgatccacataaattattatatatttttacaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttcaactgcaagtcatgctgaaggtgatccacataaattattatatatttttacaggt 60


Query: 61 attataggtgcattctttggtgcaatctcttatatcgcagtgagaaaggtgggtccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attataggtgcattctttggtgcaatctcttatatcgcagtgagaaaggtgggtccaaat 120


Query: 121 gtgcatgcatttgtattggtaacttatttctctggtttagcttcactagttacttttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgcatgcatttgtattggtaacttatttctctggtttagcttcactagttacttttcca 180


Query: 181 tcagctttcatattccaaactttcaaatggccatcattaaaagcttggggttggattaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcagctttcatattccaaactttcaaatggccatcattaaaagcttggggttggattaca 240


Query: 241 ttaatgggtgtttttggtacagttgctcaaggtgcagtcaatagaggtattcaattggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaatgggtgtttttggtacagttgctcaaggtgcagtcaatagaggtattcaattggaa 300


Query: 301 aaagctgcaaaagccgctgcaatgaattatcttcaaattatttttacatttatttgggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagctgcaaaagccgctgcaatgaattatcttcaaattatttttacatttatttgggaa 360


Query: 361 attacattcctccatgaaacaattgattggataacattattagctgctggtttaatttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attacattcctccatgaaacaattgattggataacattattagctgctggtttaatttta 420


Query: 421 tcatgtgctattgtgactgccataagaaaataaattaataattaa 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcatgtgctattgtgactgccataagaaaataaattaataattaa 465


>Contig-U13737-1 (Contig-U13737-1Q) /CSM_Contig/Contig-U13737-1Q.Seq.d
Length = 672

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 282 tagaggtattcaattggaaa 301
||||||||||||||||||||
Sbjct: 224 tagaggtattcaattggaaa 243


>Contig-U10981-1 (Contig-U10981-1Q) /CSM_Contig/Contig-U10981-1Q.Seq.d
Length = 1510

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 282 tagaggtattcaattggaaa 301
||||||||||||||||||||
Sbjct: 879 tagaggtattcaattggaaa 898


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8031
Number of Sequences: 6905
Number of extensions: 8031
Number of successful extensions: 934
Number of sequences better than 10.0: 346
length of query: 465
length of database: 5,674,871
effective HSP length: 16
effective length of query: 449
effective length of database: 5,564,391
effective search space: 2498411559
effective search space used: 2498411559
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.12
Homology vs DNA
Query= Contig-U04047-1 (Contig-U04047-1Q) /CSM_Contig/Contig-U04047-1Q.Seq.d
(465 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU061545) Dictyostelium discoideum slug cDNA, clone SLE604. 922 0.0 1
(FH938312) CHO_OF6658xg02f1.ab1 CHO_OF6 Nicotiana tabacum ge... 52 0.019 1
(FH275749) CHO_OF4158xp24r1.ab1 CHO_OF4 Nicotiana tabacum ge... 52 0.019 1
(AC179166) Strongylocentrotus purpuratus clone R3-4016F18, W... 42 0.021 4
(AC215422) Solanum lycopersicum chromosome 2 clone C02HBa021... 42 0.11 3
(CR855312) Zebrafish DNA sequence from clone DKEY-259E6 in l... 48 0.30 1
(BX323033) Zebrafish DNA sequence from clone DKEYP-63D11. 48 0.30 1
(AC188461) Mus musculus BAC clone RP24-79E24 from chromosome... 48 0.30 1
(AC149215) Mus musculus BAC clone RP24-201G21 from chromosom... 48 0.30 1
(AL592310) Human DNA sequence from clone RP4-566D2 on chromo... 48 0.30 1
(AC113874) Rattus norvegicus clone CH230-294B6, WORKING DRAF... 48 0.30 1
(BH165527) ENTQZ79TR Entamoeba histolytica Sheared DNA Entam... 48 0.30 1
(BH132062) ENTOW10TF Entamoeba histolytica Sheared DNA Entam... 48 0.30 1
(AZ936557) 2M0193K17F Mouse 10kb plasmid UUGC2M library Mus ... 48 0.30 1
(AZ535903) ENTCE05TF Entamoeba histolytica Sheared DNA Entam... 48 0.30 1
(EC824592) SME00000282 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.30 1
(EC823910) SME00001942 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.30 1
(AC132259) Mus musculus BAC clone RP24-369B15 from chromosom... 38 0.47 3
(AC225441) Monodelphis domestica clone VMRC18-78M11, WORKING... 46 0.67 3
(AM460150) Vitis vinifera contig VV78X076292.7, whole genome... 40 0.77 3
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,... 42 0.96 3
(CR936487) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.0 6
(AC179320) Strongylocentrotus purpuratus clone R3-55P23, WOR... 42 1.1 3
(AC193281) Colobus guereza clone CH272-122B10, WORKING DRAFT... 38 1.2 4
(CR361554) Zebrafish DNA sequence from clone CH211-222L15 in... 46 1.2 1
(BX004819) Zebrafish DNA sequence from clone CH211-208B16 in... 46 1.2 1
(AC159262) Mus musculus BAC clone RP24-82I20 from chromosome... 46 1.2 1
(AC158656) Mus musculus BAC RP23-408F4 (Roswell Park Cancer... 46 1.2 1
(AC122229) Mus musculus BAC clone RP23-132F18 from 8, comple... 46 1.2 1
(EU100743) Cordyceps brongniartii isolate IMBST95031 mitocho... 46 1.2 1
(AC103710) Homo sapiens chromosome 11, clone CTD-2379P15, co... 46 1.2 1
(AC183219) Bos taurus clone CH240-102B15, WORKING DRAFT SEQU... 46 1.2 1
(AQ013732) RPCI11-23F12.TKBF RPCI-11 Homo sapiens genomic cl... 46 1.2 1
(DE961043) Macropus eugenii DNA, BAC clone: MEB1-162J06_F, 5... 46 1.2 1
(AF101703) AF101703 Human Homo sapiens genomic clone pTWB298... 46 1.2 1
(EH009654) USDA-FP_182830 Lysiphlebus testaceipes adult whol... 46 1.2 1
(BG225057) kp61f08.y1 TBN95TM-SSFH Strongyloides stercoralis... 46 1.2 1
(DU380413) 1098313016617 CHORI-243 Ovis aries genomic clone ... 38 1.5 2
(CR376825) Zebrafish DNA sequence from clone CH211-136O20 in... 32 1.6 7
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g... 44 1.7 3
(BX649452) Zebrafish DNA sequence from clone DKEY-226L10 in ... 36 1.8 5
(EJ846476) 1093017858455 Global-Ocean-Sampling_GS-30-02-01-1... 40 1.9 2
(DU684061) Bst016597 lambda03 Boechera stricta genomic clone... 40 2.0 2
(AC163375) Bos taurus clone CH240-130N8, WORKING DRAFT SEQUE... 38 2.0 6
(FP102903) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.1 3
(BX649641) Zebrafish DNA sequence from clone CH211-223O1 in ... 32 2.2 5
(CT956040) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.3 6
(AM434136) Vitis vinifera contig VV78X203408.4, whole genome... 40 2.4 2
(GC702070) Sequence 17315 from patent US 6812339. 42 2.4 2
(CR589877) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.5 6
(AC233662) Medicago truncatula, pooled multiple clones, *** ... 38 2.5 4
(AC147035) Pan troglodytes BAC clone RP43-104N19 from chromo... 36 2.7 3
(AM487004) Vitis vinifera, whole genome shotgun sequence, co... 40 2.9 2
(CU915403) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.1 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 3.2 5
(AC115730) Mus musculus chromosome 3 clone RP23-174B21 map 3... 36 3.4 6
(FP017298) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.5 4
(CR847987) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 3.5 3
(BD452699) Diagnosis of Diseases Associated with tumor suppr... 42 3.5 2
(AX251178) Sequence 146 from Patent WO0168912. 42 3.5 2
(AC174630) Colobus guereza clone CH272-460L3, WORKING DRAFT ... 42 3.7 3
(AC232522) Brassica rapa subsp. pekinensis clone KBrB073I16,... 34 3.7 4
(AC197890) Pan troglodytes chromosome X clone CH251-3O24 map... 34 3.9 6
(AC232476) Brassica rapa subsp. pekinensis clone KBrB034F07,... 38 4.0 3
(AC141062) Homo sapiens chromosome 16 clone RP11-117B15, WOR... 42 4.2 2
(CR847512) Zebrafish DNA sequence from clone DKEYP-13G11 in ... 38 4.4 2
(BX890597) Zebrafish DNA sequence from clone DKEY-65F8. 36 4.6 3
(AC031997) Homo sapiens chromosome 1 clone RP11-272A13 map 1... 40 4.6 2
(CR450738) Zebrafish DNA sequence from clone DKEY-71L10 in l... 44 4.6 1
(CR385030) Zebrafish DNA sequence from clone DKEY-114E9. 44 4.6 1
(CR354582) Zebrafish DNA sequence from clone CH211-215B24 in... 44 4.6 1
(AC153640) Mus musculus 6 BAC RP23-230A2 (Roswell Park Cance... 44 4.6 1
(AC110219) Mus musculus chromosome 1, clone RP24-541P18, com... 44 4.6 1
(AM469276) Vitis vinifera contig VV78X056552.3, whole genome... 44 4.6 1
(AM458867) Vitis vinifera contig VV78X134043.50, whole genom... 44 4.6 1
(AM431148) Vitis vinifera contig VV78X005643.8, whole genome... 44 4.6 1
(AC114492) Homo sapiens chromosome 1 clone RP11-319C21, comp... 44 4.6 1
(AC108750) Homo sapiens 3 BAC RP11-249L12 (Roswell Park Canc... 44 4.6 1
(AC145757) Microcebus murinus clone CH257-115P14, WORKING DR... 44 4.6 1
(AC139756) Mus musculus chromosome UNK clone RP23-450I12, WO... 44 4.6 1
(AC134297) Rattus norvegicus clone CH230-6J16, WORKING DRAFT... 44 4.6 1
(CU929725) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.6 1
(AC053509) Homo sapiens chromosome 1 clone RP11-319E17, WORK... 44 4.6 1
(AL844595) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 44 4.6 1
(AL844509) Plasmodium falciparum chromosome 13. 44 4.6 1
(AL359754) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 4.6 1
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 44 4.6 1
(AC223189) Bos taurus clone CH240-426L19, WORKING DRAFT SEQU... 44 4.6 1
(AC021123) Homo sapiens chromosome 3 clone RP11-356O23, WORK... 44 4.6 1
(BH358891) CH230-18F21.TVB CHORI-230 Segment 1 Rattus norveg... 44 4.6 1
(FI139052) MUGQ_CH252P009J11Sp6_CH0239_040 CHORI-252 Vervet ... 44 4.6 1
(FI056139) CHO_OF6603xf06r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 4.6 1
(ER984171) MUGQ_CH252P309C07T7_CP530_030 CHORI-252 Vervet Mo... 44 4.6 1
(ER422520) 1092963717950 Global-Ocean-Sampling_GS-35-01-01-1... 44 4.6 1
(EK469171) 1095469440691 Global-Ocean-Sampling_GS-32-01-01-1... 44 4.6 1
(EK316932) 1095462416505 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.6 1
(EK247325) 1095460263681 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.6 1
(AM630508) Entamoeba dispar GSS, clone dispar56c01.p1k. 44 4.6 1
(EJ688151) 1092955214762 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.6 1
(EJ368702) 1092963715231 Global-Ocean-Sampling_GS-28-01-01-1... 44 4.6 1
(AG689097) Macaca fuscata fuscata DNA, clone: MSB2-121J18_R,... 44 4.6 1
(CL598057) OB__Ba0060D17.f OB__Ba Oryza brachyantha genomic ... 44 4.6 1
(EL501377) 071_PFLAB1-S-PLATE10B.AB1 Blood stage Plasmodium ... 44 4.6 1
(CD788329) EST659690 RAB Rhipicephalus appendiculatus cDNA c... 44 4.6 1
(BX313771) AGENAE Rainbow trout multi-tissues - normalized +... 44 4.6 1
(BG743172) 602634331F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone... 44 4.6 1
(GE401951) 293789026 Nasonia vitripennis Female Pupae Nasoni... 44 4.6 1
(GE388317) 293720068 Nasonia vitripennis Female Pupae Nasoni... 44 4.6 1
(U02603) Rickettsia prowazekii Madrid E sdhC, sdhD, sdhA, gl... 44 4.6 1
(AE017197) Rickettsia typhi str. Wilmington complete genome. 44 4.6 1
(CD420687) ku90c07.y1 Strongyloides ratti PA female naive pA... 34 4.7 2
(AL928622) Zebrafish DNA sequence from clone DKEY-31O13. 42 4.7 4
(CL990355) ZMMBHf0001a19.f ZMMBHf Zea mays genomic clone ZMM... 36 5.1 2
(BX255899) Zebrafish DNA sequence from clone CH211-279I13 in... 42 5.3 4
(AY391851) Candida metapsilosis strain MCO448 left telomeric... 36 5.6 3
(AC011988) Homo sapiens clone RP11-19B15, WORKING DRAFT SEQU... 36 5.7 4
(EI487414) PV_GBa0102F03.f PV_GBa Phaseolus vulgaris genomic... 34 6.0 2
(AJ556134) Necator americanus complete mitochondrial genome ... 36 6.3 2
(AM605835) Entamoeba invadens IP1 GSS, clone inv056b02.p1k. 34 6.3 2
(EJ781822) 1093017261939 Global-Ocean-Sampling_GS-30-02-01-1... 30 6.4 3
(CC462314) ZMMBBc0355J11f ZMMBBc Zea mays subsp. mays genomi... 34 6.6 2
(AC016130) Drosophila melanogaster strain y chromosome 2 clo... 36 6.8 3
(CR855324) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.9 4
(AK048222) Mus musculus 16 days embryo head cDNA, RIKEN full... 38 6.9 2
(EK474683) 1095469475272 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.1 2
(BC090666) Mus musculus mitogen-activated protein kinase kin... 38 7.1 2
(FC819552) Sr_pAMT7_015c15_T7 S. ratti mixed stage pAMP Stro... 34 7.1 2
(AP008090) Lotus japonicus genomic DNA, chromosome 5, clone:... 34 7.2 5
(EK470962) 1095469452999 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.2 2
(AC161527) Mus musculus chromosome 3, clone RP23-174B21, com... 36 7.2 5
(EJ798886) 1093017415637 Global-Ocean-Sampling_GS-30-02-01-1... 30 7.2 3
(EJ128689) 1092343405936 Global-Ocean-Sampling_GS-27-01-01-1... 34 7.6 2
(Z97348) Plasmodium falciparum MAL3P1. 34 7.6 4
(AC192391) Pan troglodytes BAC clone CH251-331C17 from chrom... 34 7.7 6
(EY869712) CL06-C4-500-030-C01-CT.F Rangpur lime root, green... 40 7.9 2
(AC219518) Bos taurus clone CH240-330O22, WORKING DRAFT SEQU... 32 8.2 2
(AL953895) Zebrafish DNA sequence from clone CH211-231M14 in... 40 8.2 3
(AC182079) Bos taurus clone CH240-330O4, WORKING DRAFT SEQUE... 32 8.4 2
(AL732610) Zebrafish DNA sequence from clone CH211-12N8. 32 8.5 2
(AC221474) Bos taurus clone CH240-410D14, WORKING DRAFT SEQU... 36 8.7 3
(BX005056) Zebrafish DNA sequence from clone CH211-77A11 in ... 40 8.7 3
(AP003972) Homo sapiens genomic DNA, chromosome 11q, clone:R... 36 9.4 3
(CU469361) Zebrafish DNA sequence from clone CH73-109I3 in l... 34 9.5 3
(AB452937) Onychodactylus japonicus mitochondrial cytb gene ... 34 9.5 3
(AB452936) Onychodactylus japonicus mitochondrial cytb gene ... 34 9.5 3
(AB452935) Onychodactylus japonicus mitochondrial cytb gene ... 34 9.5 3
(AC148525) Medicago truncatula chromosome 8 clone mth2-24i13... 36 9.6 2
(AC166675) Bos taurus clone CH240-167F3, WORKING DRAFT SEQUE... 38 9.8 3
(CU915792) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 10.0 3

>(AU061545) Dictyostelium discoideum slug cDNA, clone SLE604.
Length = 466

Score = 922 bits (465), Expect = 0.0
Identities = 465/465 (100%)
Strand = Plus / Plus


Query: 1 ggttcaactgcaagtcatgctgaaggtgatccacataaattattatatatttttacaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttcaactgcaagtcatgctgaaggtgatccacataaattattatatatttttacaggt 60


Query: 61 attataggtgcattctttggtgcaatctcttatatcgcagtgagaaaggtgggtccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attataggtgcattctttggtgcaatctcttatatcgcagtgagaaaggtgggtccaaat 120


Query: 121 gtgcatgcatttgtattggtaacttatttctctggtttagcttcactagttacttttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgcatgcatttgtattggtaacttatttctctggtttagcttcactagttacttttcca 180


Query: 181 tcagctttcatattccaaactttcaaatggccatcattaaaagcttggggttggattaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcagctttcatattccaaactttcaaatggccatcattaaaagcttggggttggattaca 240


Query: 241 ttaatgggtgtttttggtacagttgctcaaggtgcagtcaatagaggtattcaattggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaatgggtgtttttggtacagttgctcaaggtgcagtcaatagaggtattcaattggaa 300


Query: 301 aaagctgcaaaagccgctgcaatgaattatcttcaaattatttttacatttatttgggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagctgcaaaagccgctgcaatgaattatcttcaaattatttttacatttatttgggaa 360


Query: 361 attacattcctccatgaaacaattgattggataacattattagctgctggtttaatttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attacattcctccatgaaacaattgattggataacattattagctgctggtttaatttta 420


Query: 421 tcatgtgctattgtgactgccataagaaaataaattaataattaa 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcatgtgctattgtgactgccataagaaaataaattaataattaa 465

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 659,625,123
Number of extensions: 43048295
Number of successful extensions: 3675398
Number of sequences better than 10.0: 150
Length of query: 465
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 442
Effective length of database: 99,442,330,388
Effective search space: 43953510031496
Effective search space used: 43953510031496
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04047-1 (Contig-U04047-1Q) /CSM_Contig/Contig-U04047-1Q.Seq.d
(465 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CT978603_99(CT978603|pid:none) Synechococcus sp. RCC307 genomic ... 86 3e-16
CP000097_1286(CP000097|pid:none) Synechococcus sp. CC9902, compl... 80 3e-14
CP000095_888(CP000095|pid:none) Prochlorococcus marinus str. NAT... 77 1e-13
BX569691_326(BX569691|pid:none) Synechococcus sp. WH8102 complet... 77 3e-13
FM954973_1089(FM954973|pid:none) Vibrio splendidus LGP32 chromos... 76 4e-13
CP000435_1580(CP000435|pid:none) Synechococcus sp. CC9311, compl... 75 1e-12
CP000878_705(CP000878|pid:none) Prochlorococcus marinus str. MIT... 74 2e-12
CU928179_547(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 72 5e-12
CP001133_51(CP001133|pid:none) Vibrio fischeri MJ11 chromosome I... 70 2e-11
CP000500_661(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 70 3e-11
CT971583_1072(CT971583|pid:none) Synechococcus WH7803 complete g... 69 4e-11
CP000576_919(CP000576|pid:none) Prochlorococcus marinus str. MIT... 69 7e-11
AE017126_754(AE017126|pid:none) Prochlorococcus marinus subsp. m... 67 2e-10
CU928167_193(CU928167|pid:none) Kluyveromyces thermotolerans str... 67 2e-10
CR382135_352(CR382135|pid:none) Debaryomyces hansenii strain CBS... 66 3e-10
CP000552_1022(CP000552|pid:none) Prochlorococcus marinus str. MI... 66 4e-10
CP000927_4808(CP000927|pid:none) Caulobacter sp. K31, complete g... 65 8e-10
BX548175_780(BX548175|pid:none) Prochlorococcus marinus MIT9313 ... 65 8e-10
CP000152_392(CP000152|pid:none) Burkholderia sp. 383 chromosome ... 65 1e-09
CP000744_5478(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 65 1e-09
CP000554_1576(CP000554|pid:none) Prochlorococcus marinus str. MI... 64 1e-09
(Q08980) RecName: Full=Probable transport protein YPL264C; &AY6... 64 1e-09
AE004091_4830(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 64 2e-09
AY658705_1(AY658705|pid:none) Synthetic construct Peudomonas aer... 64 2e-09
CP000950_2678(CP000950|pid:none) Yersinia pseudotuberculosis YPI... 63 4e-09
BX936398_1374(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 62 5e-09
CP000083_4103(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 60 2e-08
(Q04835) RecName: Full=Uncharacterized membrane protein YMR253C;... 60 2e-08
AM920431_246(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 60 2e-08
FN392320_611(FN392320|pid:none) Pichia pastoris GS115 chromosome... 60 3e-08
CP000510_1637(CP000510|pid:none) Psychromonas ingrahamii 37, com... 60 3e-08
BC143283_1(BC143283|pid:none) Homo sapiens cDNA clone MGC:176803... 59 4e-08
AX647611_1(AX647611|pid:none) Sequence 1803 from Patent EP1270724. 59 4e-08
CR382132_173(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 59 7e-08
AY723857_1(AY723857|pid:none) Saccharomyces cerevisiae clone FLH... 58 9e-08
DQ240722_1(DQ240722|pid:none) Atelocynus microtis isolate 5190 t... 58 9e-08
CP001056_2943(CP001056|pid:none) Clostridium botulinum B str. Ek... 58 1e-07
DQ240740_1(DQ240740|pid:none) Speothos venaticus isolate 990206 ... 57 2e-07
EF472437_1(EF472437|pid:none) Hydrictis maculicollis transmembra... 57 2e-07
CP001614_4228(CP001614|pid:none) Teredinibacter turnerae T7901, ... 57 2e-07
EF988031_1(EF988031|pid:none) Ictonyx libyca transmembrane 20 (T... 57 2e-07
CR380954_102(CR380954|pid:none) Candida glabrata strain CBS138 c... 57 3e-07
AM260479_2663(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 56 4e-07
AE013598_3944(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 56 4e-07
AP008229_3807(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 56 4e-07
DQ240738_1(DQ240738|pid:none) Pseudalopex gymnocercus isolate 90... 56 5e-07
EF472433_1(EF472433|pid:none) Lontra canadensis transmembrane pr... 56 5e-07
EF472431_1(EF472431|pid:none) Aonyx cinerea transmembrane protei... 56 5e-07
EF472434_1(EF472434|pid:none) Lontra felina transmembrane protei... 56 5e-07
EF988048_1(EF988048|pid:none) Eira barbara transmembrane 20 (TME... 56 5e-07
EF472436_1(EF472436|pid:none) Lutra lutra transmembrane protein ... 56 5e-07
EF472444_1(EF472444|pid:none) Ictonyx striatus transmembrane pro... 56 5e-07
EF988053_1(EF988053|pid:none) Mellivora capensis transmembrane 2... 55 6e-07
DQ240730_1(DQ240730|pid:none) Chrysocyon brachyurus isolate 8706... 55 6e-07
EF472441_1(EF472441|pid:none) Poecilogale albinucha transmembran... 55 6e-07
CU633749_2182(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 55 6e-07
EF988032_1(EF988032|pid:none) Vormela peregusna transmembrane 20... 55 8e-07
AM039952_652(AM039952|pid:none) Xanthomonas campestris pv. vesic... 55 8e-07
DQ240747_1(DQ240747|pid:none) Vulpes rueppellii isolate 2 transm... 55 8e-07
DQ240745_1(DQ240745|pid:none) Vulpes corsac isolate 488 transmem... 55 8e-07
EF988050_1(EF988050|pid:none) Galictis cuja transmembrane 20 (TM... 55 8e-07
DQ240721_1(DQ240721|pid:none) Alopex lagopus isolate 414 transme... 55 8e-07
EF988049_1(EF988049|pid:none) Galictis vittata transmembrane 20 ... 55 8e-07
AM920689_668(AM920689|pid:none) Xanthomonas campestris pv. campe... 55 1e-06
DQ240749_1(DQ240749|pid:none) Vulpes zerda isolate 1 transmembra... 55 1e-06
EF988037_1(EF988037|pid:none) Mustela nivalis transmembrane 20 (... 55 1e-06
EF988054_1(EF988054|pid:none) Melogale moschata transmembrane 20... 55 1e-06
DQ240741_1(DQ240741|pid:none) Urocyon cinereoargenteus isolate 4... 54 1e-06
CP000352_2610(CP000352|pid:none) Ralstonia metallidurans CH34, c... 54 2e-06
CR378678_159(CR378678|pid:none) Photobacterium profundum SS9 chr... 54 2e-06
EF472430_1(EF472430|pid:none) Aonyx capensis transmembrane prote... 54 2e-06
AP009179_1921(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 53 4e-06
DQ240724_1(DQ240724|pid:none) Canis aureus isolate 627 transmemb... 53 4e-06
AE015927_690(AE015927|pid:none) Clostridium tetani E88, complete... 53 4e-06
DQ240750_1(DQ240750|pid:none) Ursus americanus isolate 7193328 t... 53 4e-06
DQ240751_1(DQ240751|pid:none) Ailuropoda melanoleuca isolate AME... 53 4e-06
CP000521_1152(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 52 5e-06
CU468230_1330(CU468230|pid:none) Acinetobacter baumannii str. SD... 52 7e-06
DQ240735_1(DQ240735|pid:none) Pseudalopex culpaeus isolate 900 t... 52 7e-06
EF678493_1(EF678493|pid:none) Picea sitchensis clone WS02925_G12... 52 7e-06
CP000382_2131(CP000382|pid:none) Clostridium novyi NT, complete ... 52 9e-06
DQ240732_1(DQ240732|pid:none) Lycaon pictus isolate ZIMQR transm... 52 9e-06
AM743169_2010(AM743169|pid:none) Stenotrophomonas maltophilia K2... 51 1e-05
(Q0Q7U8) RecName: Full=Protein AMAC1L2; AltName: Full=Acyl-malon... 51 1e-05
CP000312_1286(CP000312|pid:none) Clostridium perfringens SM101, ... 51 1e-05
EF472432_1(EF472432|pid:none) Enhydra lutris transmembrane prote... 51 1e-05
(Q8N808) RecName: Full=Protein AMAC1; AltName: Full=Acyl-malonyl... 50 2e-05
(Q96KT7) RecName: Full=Protein AMAC1L2; AltName: Full=Acyl-malon... 50 3e-05
(Q0Q7U9) RecName: Full=Protein AMAC1L2; AltName: Full=Acyl-malon... 50 3e-05
AE015927_1219(AE015927|pid:none) Clostridium tetani E88, complet... 50 3e-05
CP000246_1492(CP000246|pid:none) Clostridium perfringens ATCC 13... 50 3e-05
EF988055_1(EF988055|pid:none) Taxidea taxus transmembrane 20 (TM... 50 3e-05
CP000680_2382(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 49 4e-05
DQ240752_1(DQ240752|pid:none) Mirounga angustirostris isolate 89... 49 4e-05
CP000155_3510(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 49 4e-05
CU914168_2027(CU914168|pid:none) Ralstonia solanacearum strain I... 49 6e-05
CP000932_503(CP000932|pid:none) Campylobacter lari RM2100, compl... 49 7e-05
CP001107_1028(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 48 1e-04
AY085961_1(AY085961|pid:none) Arabidopsis thaliana clone 20182 m... 48 1e-04
AM460179_3(AM460179|pid:none) Vitis vinifera contig VV78X017545.... 48 1e-04
AL646052_2223(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 48 1e-04
CP000633_1722(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 47 2e-04
H97573(H97573)hypothetical protein AGR_C_3265 [imported] - Agrob... 47 2e-04
AE007869_1736(AE007869|pid:none) Agrobacterium tumefaciens str. ... 47 2e-04
AM180355_1441(AM180355|pid:none) Clostridium difficile 630 compl... 47 2e-04
CP000031_2259(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 47 2e-04
EF988047_1(EF988047|pid:none) Gulo gulo transmembrane 20 (TMEM20... 47 2e-04
CP001644_2003(CP001644|pid:none) Ralstonia pickettii 12D chromos... 47 3e-04
(Q0Q7V0) RecName: Full=Protein AMAC1; AltName: Full=Acyl-malonyl... 46 4e-04
CP000269_327(CP000269|pid:none) Janthinobacterium sp. Marseille,... 46 4e-04
CP000472_88(CP000472|pid:none) Shewanella piezotolerans WP3, com... 46 4e-04
CU234118_2327(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 46 5e-04
CU695239_143(CU695239|pid:none) Ralstonia solanacearum strain Mo... 46 5e-04
DQ240737_1(DQ240737|pid:none) Pseudalopex griseus isolate 2474 t... 46 5e-04
AP007255_4332(AP007255|pid:none) Magnetospirillum magneticum AMB... 45 8e-04
CP000376_723(CP000376|pid:none) Silicibacter sp. TM1040 mega pla... 45 0.001
CP000738_3347(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 45 0.001
AE017226_189(AE017226|pid:none) Treponema denticola ATCC 35405, ... 44 0.001
FB805128_1(FB805128|pid:none) Sequence 24401 from Patent WO20080... 44 0.001
AL591688_180(AL591688|pid:none) Sinorhizobium meliloti 1021 comp... 44 0.002
CP000471_2347(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 44 0.002
CP000661_236(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 44 0.002
CP000377_929(CP000377|pid:none) Silicibacter sp. TM1040, complet... 44 0.002
AC126785_2(AC126785|pid:none) Medicago truncatula clone mth2-9i2... 44 0.002
CP000922_1401(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 44 0.002
AE016825_1535(AE016825|pid:none) Chromobacterium violaceum ATCC ... 44 0.002
CP000792_319(CP000792|pid:none) Campylobacter concisus 13826, co... 43 0.003
CP000057_1465(CP000057|pid:none) Haemophilus influenzae 86-028NP... 43 0.003
BA000040_4679(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 43 0.003
CP001463_1538(CP001463|pid:none) Thermococcus sibiricus MM 739, ... 43 0.003
CP000814_358(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 43 0.004
CP000025_424(CP000025|pid:none) Campylobacter jejuni RM1221, com... 43 0.004
BX571662_181(BX571662|pid:none) Wolinella succinogenes, complete... 42 0.007
AM039952_1833(AM039952|pid:none) Xanthomonas campestris pv. vesi... 42 0.007
AM421808_1391(AM421808|pid:none) Neisseria meningitidis serogrou... 42 0.007
CP001191_1422(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 42 0.007
CP000382_1399(CP000382|pid:none) Clostridium novyi NT, complete ... 42 0.007
CP000032_345(CP000032|pid:none) Ruegeria pomeroyi DSS-3 plasmid ... 42 0.009
AE008923_1774(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 42 0.009
CP001150_2378(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 41 0.012
CP000144_326(CP000144|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 41 0.012
CP000377_664(CP000377|pid:none) Silicibacter sp. TM1040, complet... 41 0.012
CP000381_1436(CP000381|pid:none) Neisseria meningitidis 053442, ... 41 0.012
CP000739_1333(CP000739|pid:none) Sinorhizobium medicae WSM419 pl... 41 0.012
CP001281_1197(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 41 0.012
CP000577_2628(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 41 0.012
CP000143_2601(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 41 0.012
CU234118_3759(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 41 0.012
CP000930_1526(CP000930|pid:none) Heliobacterium modesticaldum Ic... 41 0.015
CP001151_385(CP001151|pid:none) Rhodobacter sphaeroides KD131 ch... 41 0.015
CP000927_4545(CP000927|pid:none) Caulobacter sp. K31, complete g... 41 0.015
CP001074_684(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 41 0.015
CP000759_228(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188... 41 0.015
CP001013_3350(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 40 0.020
AM902716_3097(AM902716|pid:none) Bordetella petrii strain DSM 12... 40 0.020
AE007870_1615(AE007870|pid:none) Agrobacterium tumefaciens str. ... 40 0.020
CP000089_3028(CP000089|pid:none) Dechloromonas aromatica RCB, co... 40 0.026
AE009951_978(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 40 0.026
CP001072_1209(CP001072|pid:none) Helicobacter pylori Shi470, com... 40 0.026
CU633749_1388(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 40 0.026
AE013598_2196(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 40 0.034
EU026118_24(EU026118|pid:none) Sphingomonas sp. ATCC 53159 diuta... 40 0.034
CP000661_572(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 40 0.034
AP008229_2100(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 40 0.034
(O25832) RecName: Full=Uncharacterized transporter HP_1234; &AE... 39 0.044
AE017125_897(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 39 0.044
BA000012_683(BA000012|pid:none) Mesorhizobium loti MAFF303099 DN... 39 0.044
CP000830_151(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c... 39 0.044
AE009442_1876(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 39 0.044
CP001607_684(CP001607|pid:none) Aggregatibacter aphrophilus NJ87... 39 0.044
CP000270_2971(CP000270|pid:none) Burkholderia xenovorans LB400 c... 39 0.058
AM747721_2337(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 39 0.058
CP000830_80(CP000830|pid:none) Dinoroseobacter shibae DFL 12, co... 39 0.058
CP000941_1947(CP000941|pid:none) Xylella fastidiosa M12, complet... 39 0.058
CP000240_332(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-13... 39 0.058
AE003849_2557(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 39 0.058
AJ783769_36(AJ783769|pid:none) Sulfolobus tengchongensis spindle... 39 0.076
(Q9ZJZ2) RecName: Full=Uncharacterized transporter jhp_1155; &A... 39 0.076
CP000384_847(CP000384|pid:none) Mycobacterium sp. MCS, complete ... 39 0.076
CP000133_1741(CP000133|pid:none) Rhizobium etli CFN 42, complete... 39 0.076
AM743169_3862(AM743169|pid:none) Stenotrophomonas maltophilia K2... 39 0.076
CP000513_71(CP000513|pid:none) Dichelobacter nodosus VCS1703A, c... 39 0.076
CP000031_2858(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 39 0.076
AE008691_590(AE008691|pid:none) Thermoanaerobacter tengcongensis... 38 0.099
CP000264_2643(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 38 0.099
AC104615_17(AC104615|pid:none) Oryza sativa chromosome 10 BAC OS... 38 0.13
BX572601_194(BX572601|pid:none) Rhodopseudomonas palustris CGA00... 38 0.13
AE016825_3479(AE016825|pid:none) Chromobacterium violaceum ATCC ... 37 0.17
AB010697_22(AB010697|pid:none) Arabidopsis thaliana genomic DNA,... 37 0.17
U51197_23(U51197|pid:none) Sphingomonas S88 sphingan polysacchar... 37 0.22
AE004091_1062(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 37 0.22
AY088415_1(AY088415|pid:none) Arabidopsis thaliana clone 6530 mR... 37 0.22
CP001463_1745(CP001463|pid:none) Thermococcus sibiricus MM 739, ... 37 0.22
CP000264_131(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 37 0.22
CP000133_608(CP000133|pid:none) Rhizobium etli CFN 42, complete ... 37 0.22
CP001622_1584(CP001622|pid:none) Rhizobium leguminosarum bv. tri... 37 0.22
AE000657_22(AE000657|pid:none) Aquifex aeolicus VF5, complete ge... 37 0.22
CP001173_1152(CP001173|pid:none) Helicobacter pylori G27, comple... 37 0.22
CP000507_1078(CP000507|pid:none) Shewanella amazonensis SB2B, co... 37 0.22
CP000438_4054(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 37 0.22
AP009484_706(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 37 0.22
AC137077_4(AC137077|pid:none) Medicago truncatula clone mth2-8g1... 37 0.29
CP000577_2289(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 37 0.29
AM167904_2199(AM167904|pid:none) Bordetella avium 197N complete ... 37 0.29
AM236080_1970(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 37 0.29
CP000744_6149(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 37 0.29
AP008937_1395(AP008937|pid:none) Lactobacillus fermentum IFO 395... 37 0.29
CP000961_2435(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 36 0.38
CP000680_1437(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 36 0.38
CP000813_322(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 36 0.38
CP000438_5766(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 36 0.49
CP000285_3071(CP000285|pid:none) Chromohalobacter salexigens DSM... 36 0.49
CP000157_481(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 36 0.49
CP000390_900(CP000390|pid:none) Mesorhizobium sp. BNC1, complete... 36 0.49
CP000250_249(CP000250|pid:none) Rhodopseudomonas palustris HaA2,... 36 0.49
AE007869_198(AE007869|pid:none) Agrobacterium tumefaciens str. C... 35 0.64
CP000709_491(CP000709|pid:none) Brucella ovis ATCC 25840 chromos... 35 0.64
AE014299_1539(AE014299|pid:none) Shewanella oneidensis MR-1, com... 35 0.64
AE014292_569(AE014292|pid:none) Brucella suis 1330 chromosome II... 35 0.64
CP000031_224(CP000031|pid:none) Ruegeria pomeroyi DSS-3, complet... 35 0.64
AE008688_200(AE008688|pid:none) Agrobacterium tumefaciens str. C... 35 0.64
FB805124_1(FB805124|pid:none) Sequence 24397 from Patent WO20080... 35 0.64
AM167904_118(AM167904|pid:none) Bordetella avium 197N complete g... 35 0.64
CP000873_558(CP000873|pid:none) Brucella canis ATCC 23365 chromo... 35 0.64
FB805126_1(FB805126|pid:none) Sequence 24399 from Patent WO20080... 35 0.64
AE017224_592(AE017224|pid:none) Brucella abortus biovar 1 str. 9... 35 0.64
CP000781_2050(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 35 0.64
CP001108_217(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 35 0.84
CP000362_1789(CP000362|pid:none) Roseobacter denitrificans OCh 1... 35 0.84
AE008922_2579(AE008922|pid:none) Xanthomonas campestris pv. camp... 35 0.84
CP000356_1848(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 35 0.84
CP000230_2769(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 35 0.84
CP001074_3457(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 35 1.1
CP000267_2828(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 35 1.1
CP000656_3446(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 35 1.1
AD3594(AD3594) transporter, dme family BMEII0677 [imported] - Br... 35 1.1
CP001607_1320(CP001607|pid:none) Aggregatibacter aphrophilus NJ8... 35 1.1
CP000629_2003(CP000629|pid:none) Agrobacterium radiobacter K84 c... 35 1.1
CP000264_1022(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 35 1.1
CP000606_2187(CP000606|pid:none) Shewanella loihica PV-4, comple... 35 1.1
CP000438_2411(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 35 1.1
CP001191_2969(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 35 1.1
CP001252_2912(CP001252|pid:none) Shewanella baltica OS223, compl... 34 1.4
BA000040_3407(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 34 1.4
AP009152_1141(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 34 1.4
CP000491_319(CP000491|pid:none) Paracoccus denitrificans PD1222 ... 34 1.4
CP000749_137(CP000749|pid:none) Marinomonas sp. MWYL1, complete ... 34 1.9
CU207366_3389(CU207366|pid:none) Gramella forsetii KT0803 comple... 34 1.9
AE009950_109(AE009950|pid:none) Pyrococcus furiosus DSM 3638, co... 34 1.9
CP000494_1743(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 34 1.9
CP001192_980(CP001192|pid:none) Rhizobium leguminosarum bv. trif... 34 1.9
CP000362_2917(CP000362|pid:none) Roseobacter denitrificans OCh 1... 33 2.4
CP000472_2869(CP000472|pid:none) Shewanella piezotolerans WP3, c... 33 2.4
BX640440_102(BX640440|pid:none) Bordetella bronchiseptica strain... 33 2.4
AY658803_1(AY658803|pid:none) Synthetic construct Peudomonas aer... 33 2.4
CP000830_1582(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 33 2.4
AF072874_1(AF072874|pid:none) Mycobacterium smegmatis putative m... 33 2.4
AM902716_3079(AM902716|pid:none) Bordetella petrii strain DSM 12... 33 2.4
AP008957_763(AP008957|pid:none) Rhodococcus erythropolis PR4 DNA... 33 2.4
AE007869_2391(AE007869|pid:none) Agrobacterium tumefaciens str. ... 33 2.4
CP000250_81(CP000250|pid:none) Rhodopseudomonas palustris HaA2, ... 33 2.4
AP009493_3664(AP009493|pid:none) Streptomyces griseus subsp. gri... 33 2.4
CP000438_555(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA1... 33 2.4
CP001389_778(CP001389|pid:none) Rhizobium sp. NGR234, complete g... 33 2.4
CP000612_324(CP000612|pid:none) Desulfotomaculum reducens MI-1, ... 33 2.4
CP001344_4806(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 33 2.4
CP000480_415(CP000480|pid:none) Mycobacterium smegmatis str. MC2... 33 2.4
AM432859_1(AM432859|pid:none) Vitis vinifera contig VV78X065016.... 33 2.4
CP000577_2201(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 33 3.2
CU207366_1946(CU207366|pid:none) Gramella forsetii KT0803 comple... 33 3.2
CP000473_6548(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 33 3.2
CP001063_3257(CP001063|pid:none) Shigella boydii CDC 3083-94, co... 33 3.2
CP000323_1411(CP000323|pid:none) Psychrobacter cryohalolentis K5... 33 3.2
CP000661_763(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 33 3.2
CP000304_3160(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 33 3.2
EF676813_1(EF676813|pid:none) Picea sitchensis clone WS02753_G09... 33 3.2
CP000031_2419(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 33 3.2
CP000143_2171(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 33 3.2
CP000266_3160(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 33 3.2
AB010699_15(AB010699|pid:none) Arabidopsis thaliana genomic DNA,... 33 3.2
AL591688_1030(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 33 3.2
AE014073_3749(AE014073|pid:none) Shigella flexneri 2a str. 2457T... 33 3.2
CP000284_1709(CP000284|pid:none) Methylobacillus flagellatus KT,... 33 3.2
AE005674_3422(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 33 3.2
CP000239_1271(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 33 3.2
AP011115_3831(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 33 4.2
AL591985_1423(AL591985|pid:none) Sinorhizobium meliloti 1021 pla... 33 4.2
CP000577_1737(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 33 4.2
AP008955_2623(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 33 4.2
AE004091_3222(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 33 4.2
AK069283_1(AK069283|pid:none) Oryza sativa Japonica Group cDNA c... 33 4.2
CP000082_1051(CP000082|pid:none) Psychrobacter arcticus 273-4, c... 33 4.2
CP001150_1428(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 33 4.2
CP000644_2299(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 33 4.2
AK100993_1(AK100993|pid:none) Oryza sativa Japonica Group cDNA c... 33 4.2
CP000360_749(CP000360|pid:none) Acidobacteria bacterium Ellin345... 33 4.2
CP000040_339(CP000040|pid:none) Bacillus cereus E33L plasmid pE3... 33 4.2
CP000076_6070(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 33 4.2
BT084636_1(BT084636|pid:none) Zea mays full-length cDNA clone ZM... 33 4.2
CP000744_641(CP000744|pid:none) Pseudomonas aeruginosa PA7, comp... 33 4.2
AM420293_1698(AM420293|pid:none) Saccharopolyspora erythraea NRR... 32 5.4
GM015893_275(GM015893|pid:none) Sequence 723 from Patent EP19234... 32 5.4
CP000312_2032(CP000312|pid:none) Clostridium perfringens SM101, ... 32 5.4
FM209186_1846(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 32 5.4
AP006878_1793(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 32 5.4
EU971151_1(EU971151|pid:none) Zea mays clone 358513 nodulin-like... 32 5.4
BX572594_282(BX572594|pid:none) Rhodopseudomonas palustris CGA00... 32 5.4
CP000557_1161(CP000557|pid:none) Geobacillus thermodenitrificans... 32 5.4
EU961623_1(EU961623|pid:none) Zea mays clone 237106 nodulin prot... 32 5.4
CP000606_690(CP000606|pid:none) Shewanella loihica PV-4, complet... 32 5.4
CP001616_2939(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 32 5.4
CP000638_377(CP000638|pid:none) Agrobacterium vitis S4 plasmid p... 32 5.4
AF378152_1(AF378152|pid:none) Tomato mosaic virus coat protein g... 32 5.4
CP001250_27(CP001250|pid:none) Borrelia afzelii ACA-1 plasmid cp... 32 5.4
AP010935_1764(AP010935|pid:none) Streptococcus dysgalactiae subs... 32 5.4
CP000463_185(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 32 5.4
CU928162_3955(CU928162|pid:none) Escherichia coli ED1a chromosom... 32 7.1
AK226700_1(AK226700|pid:none) Arabidopsis thaliana mRNA for hypo... 32 7.1
CP000083_2182(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 32 7.1
(Q07421) RecName: Full=Plasma membrane ATPase; EC=3.6.3... 32 7.1
BC086750_1(BC086750|pid:none) Danio rerio zgc:101867, mRNA (cDNA... 32 7.1
EU894015_1(EU894015|pid:none) Escherichia coli strain 493/89 put... 32 7.1
AB028616_11(AB028616|pid:none) Arabidopsis thaliana genomic DNA,... 32 7.1
BC154758_1(BC154758|pid:none) Danio rerio zgc:101867, mRNA (cDNA... 32 7.1
BX640430_138(BX640430|pid:none) Bordetella parapertussis strain ... 32 7.1
CU651637_3277(CU651637|pid:none) Escherichia coli LF82 chromosom... 32 7.1
CP000283_102(CP000283|pid:none) Rhodopseudomonas palustris BisB5... 32 7.1
BX640442_237(BX640442|pid:none) Bordetella bronchiseptica strain... 32 7.1
CP000800_3688(CP000800|pid:none) Escherichia coli E24377A, compl... 32 7.1
AE017333_372(AE017333|pid:none) Bacillus licheniformis DSM 13, c... 32 7.1
CP000764_649(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 32 7.1
CU928160_3434(CU928160|pid:none) Escherichia coli IAI1 chromosom... 32 7.1
CP000076_5701(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 32 7.1
CP000781_1190(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 32 7.1
CP000247_3458(CP000247|pid:none) Escherichia coli 536, complete ... 32 7.1
AL445066_166(AL445066|pid:none) Thermoplasma acidophilum complet... 32 7.1
BX640417_320(BX640417|pid:none) Bordetella pertussis strain Toha... 32 7.1
AE014075_4080(AE014075|pid:none) Escherichia coli CFT073, comple... 32 7.1
CP000438_1802(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 32 7.1
AP009240_3664(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 32 7.1
CP000661_1681(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 32 7.1
CP001305_29(CP001305|pid:none) Borrelia garinii PBr plasmid PBr_... 32 9.3
CP000891_3881(CP000891|pid:none) Shewanella baltica OS195, compl... 32 9.3
AP011115_4495(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 32 9.3
CP001048_3125(CP001048|pid:none) Yersinia pseudotuberculosis PB1... 32 9.3
CP000094_5271(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 32 9.3
AD0098(AD0098) probable sugar transport protein YPO0798 [importe... 32 9.3
CP000749_3428(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 32 9.3
CP000086_946(CP000086|pid:none) Burkholderia thailandensis E264 ... 32 9.3
AC079374_12(AC079374|pid:none) Arabidopsis thaliana chromosome 1... 32 9.3
CP000577_556(CP000577|pid:none) Rhodobacter sphaeroides ATCC 170... 32 9.3
D86382(D86382)hypothetical protein F4F7.12 [imported] - Arabidop... 32 9.3
CP000301_512(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 32 9.3
CP000264_2060(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 32 9.3
CU468135_1416(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 32 9.3
BA000012_1998(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 32 9.3
AL939118_73(AL939118|pid:none) Streptomyces coelicolor A3(2) com... 32 9.3
CP000362_1869(CP000362|pid:none) Roseobacter denitrificans OCh 1... 32 9.3
DQ056463_1(DQ056463|pid:none) Arabidopsis thaliana nodulin MtN21... 32 9.3
BX640442_256(BX640442|pid:none) Bordetella bronchiseptica strain... 32 9.3
CP000431_4532(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 32 9.3

>CT978603_99(CT978603|pid:none) Synechococcus sp. RCC307 genomic DNA
sequence.
Length = 303

Score = 86.3 bits (212), Expect = 3e-16
Identities = 41/137 (29%), Positives = 77/137 (56%)
Frame = +1

Query: 28 DPHKLLYIFTGIIGAFFGAISYIAVRKVGPNVHAFVLVTYFSGLASLVTFPSAFIFQTFK 207
DP L + GI GA A++Y+ VR + + H V++ YF ++ + P F+
Sbjct: 158 DPLPALAVTIGITGALLTALAYVTVRHLATDEHRSVIIFYFPLMSVPMALP--FVLANPV 215

Query: 208 WPSLKAWGWITLMGVFGTVAQGAVNRGIQLEKAAKAAAMNYLQIIFTFIWEITFLHETID 387
WP+ W W+ +G+F + Q + +G+ AA+A A+NY+Q++F +W + FL E+I+
Sbjct: 216 WPNAVDWAWLIGVGLFTQLGQIFLTQGLASMPAARATAINYVQVVFAALWGLLFLGESIN 275

Query: 388 WITLLAAGLILSCAIVT 438
+ ++ A L+L +++
Sbjct: 276 ELMVMGAVLVLGATLIS 292

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 799,501,809
Number of extensions: 16198943
Number of successful extensions: 49675
Number of sequences better than 10.0: 361
Number of HSP's gapped: 49578
Number of HSP's successfully gapped: 363
Length of query: 155
Length of database: 1,061,185,681
Length adjustment: 116
Effective length of query: 39
Effective length of database: 682,045,713
Effective search space: 26599782807
Effective search space used: 26599782807
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.75 gvh: 0.61 alm: 0.24 top: 0.63 tms: 0.20 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: plasma membrane
16.0 %: vacuolar
12.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for Contig-U04047-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0