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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04043-1
Contig ID Contig-U04043-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Contig-U04043-1Q.Seq.d
GTCCACCCCCACCTTCATCATCCTCATCATCACCTGCACCACTTGGTGGA
GGCTCAAATTATAGAGATCCATATTATGATGGTAGAGGTAGAGGTTTGAG
AGGAGGACCACCACCATACAGAGATAATCGTGATAACATTAGACCACCAG
TAGATAGATATAGAGATAACAACCGAGGTGGAGGTGGTGATTGGGATAGA
GACCGTGATTGGGACAGAGACAGAGATAGAATTGATCATAGAGATCGTGA
TTGGGATAGATTGGATGACCGTGGTAGAGATAGGGATTTTAGAGATCGTG
ACATCAGAGACAGAGATTTCAGGGACCGTGATAGAGATTTTAGAGATATT
CGTGATAGAGACCTCTGGGAGAGAGATAGATTATTGGATCGTGAAAGAGA
CCTCCGTGATAGAGACCTCTGGGAAAGAGATAGAATGTTGGACAGAGACA
GAGAAAGAGATAGACTAGACAGACCAATCGATCATGTAAGGGATAGAGAT
AGACTTTTAGATGGTCGTGATGGTAGACTATCAATTGATAGTAGAGATAG
AATGTTGGATAGAAATGATAGAATTATTGATAATGGTAGAGATAGAGGTG
ATAGAATTATTGATAATGGTAGGGATAGAATATATTCATCTCAACAACAA
CAGCAGCAACAGCAACAACAACAACAACAACCACTTCTCCTACT
Gap no gap
Contig length 694
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3018536
End point 3019230
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04043
List of clone(s) 

est1=SLE583F,1,695
Translated Amino Acid sequence 
PPPPSSSSSSPAPLGGGSNYRDPYYDGRGRGLRGGPPPYRDNRDNIRPPVDRYRDNNRGG
GGDWDRDRDWDRDRDRIDHRDRDWDRLDDRGRDRDFRDRDIRDRDFRDRDRDFRDIRDRD
LWERDRLLDRERDLRDRDLWERDRMLDRDRERDRLDRPIDHVRDRDRLLDGRDGRLSIDS
RDRMLDRNDRIIDNGRDRGDRIIDNGRDRIYSSQQQQQQQQQQQQQPLLL
Translated Amino Acid sequence (All Frames) 
Frame A:
vhphlhhphhhlhhlveaqiieihimmvevev*eedhhhteiivitldhq*idieittev
evvigietvigteteieliieivigidwmtvveigileivtseteisgtvieileifvie
tsgreidywivketsvietsgkeiecwtetekeid*tdqsim*gieidf*mvvmvdyqli
veiecwiemiellimveieviellimvgieyihlnnnssnsnnnnnnhfsy


Frame B:
stptfiiliitcttwwrlkl*rsil*w*r*rferrtttiqr*s**h*ttsr*i*r*qprw
rw*lg*rp*lgqrqr*n*s*rs*lg*ig*pw*r*gf*rs*hqrqrfqgp**rf*rys**r
plger*iigs*krpp**rplgkr*nvgqrqrkr*trqtnrsckg*r*tfrws*w*tin**
*r*nvg*k**ny**w*r*r**ny**w*g*nifistttaatatttttttspt


Frame C:
PPPPSSSSSSPAPLGGGSNYRDPYYDGRGRGLRGGPPPYRDNRDNIRPPVDRYRDNNRGG
GGDWDRDRDWDRDRDRIDHRDRDWDRLDDRGRDRDFRDRDIRDRDFRDRDRDFRDIRDRD
LWERDRLLDRERDLRDRDLWERDRMLDRDRERDRLDRPIDHVRDRDRLLDGRDGRLSIDS
RDRMLDRNDRIIDNGRDRGDRIIDNGRDRIYSSQQQQQQQQQQQQQPLLL
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U04043-1 (Contig-U04043-1Q)
/CSM_Contig/Contig-U04043-1Q.Seq.d
         (694 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Conti...  1271  0.0
Contig-U14399-1 (Contig-U14399-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U12899-1 (Contig-U12899-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04286-1 (Contig-U04286-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12190-1 (Contig-U12190-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U10683-1 (Contig-U10683-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U05117-1 (Contig-U05117-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U03565-1 (Contig-U03565-1Q) /CSM_Contig/Conti...    38  0.012

>Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Contig-U04043-1Q.Seq.d
          Length = 694

 Score = 1271 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccacccccaccttcatcatcctcatcatcacctgcaccacttggtggaggctcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtccacccccaccttcatcatcctcatcatcacctgcaccacttggtggaggctcaaatt 60

                                                                       
Query: 61  atagagatccatattatgatggtagaggtagaggtttgagaggaggaccaccaccataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atagagatccatattatgatggtagaggtagaggtttgagaggaggaccaccaccataca 120

                                                                       
Query: 121 gagataatcgtgataacattagaccaccagtagatagatatagagataacaaccgaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagataatcgtgataacattagaccaccagtagatagatatagagataacaaccgaggtg 180

                                                                       
Query: 181 gaggtggtgattgggatagagaccgtgattgggacagagacagagatagaattgatcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggtggtgattgggatagagaccgtgattgggacagagacagagatagaattgatcata 240

                                                                       
Query: 241 gagatcgtgattgggatagattggatgaccgtggtagagatagggattttagagatcgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagatcgtgattgggatagattggatgaccgtggtagagatagggattttagagatcgtg 300

                                                                       
Query: 301 acatcagagacagagatttcagggaccgtgatagagattttagagatattcgtgatagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatcagagacagagatttcagggaccgtgatagagattttagagatattcgtgatagag 360

                                                                       
Query: 361 acctctgggagagagatagattattggatcgtgaaagagacctccgtgatagagacctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctctgggagagagatagattattggatcgtgaaagagacctccgtgatagagacctct 420

                                                                       
Query: 421 gggaaagagatagaatgttggacagagacagagaaagagatagactagacagaccaatcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggaaagagatagaatgttggacagagacagagaaagagatagactagacagaccaatcg 480

                                                                       
Query: 481 atcatgtaagggatagagatagacttttagatggtcgtgatggtagactatcaattgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcatgtaagggatagagatagacttttagatggtcgtgatggtagactatcaattgata 540

                                                                       
Query: 541 gtagagatagaatgttggatagaaatgatagaattattgataatggtagagatagaggtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtagagatagaatgttggatagaaatgatagaattattgataatggtagagatagaggtg 600

                                                    
Query: 601 atagaattattgataatggtagggatagaatatattcatct 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atagaattattgataatggtagggatagaatatattcatct 641


 Score = 32.2 bits (16), Expect = 0.76
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 527 actatcaattgatagt 542
           ||||||||||||||||
Sbjct: 542 actatcaattgatagt 527


>Contig-U14399-1 (Contig-U14399-1Q) /CSM_Contig/Contig-U14399-1Q.Seq.d
          Length = 1289

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 441 gacagagacagagaaagagatagac 465
           |||||||| ||||||||||||||||
Sbjct: 621 gacagagaaagagaaagagatagac 645


 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 444 agagacagagaaagagataga 464
           |||||||||||||||||||||
Sbjct: 693 agagacagagaaagagataga 713


 Score = 34.2 bits (17), Expect = 0.19
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 444 agagacagagaaagaga 460
           |||||||||||||||||
Sbjct: 618 agagacagagaaagaga 634


 Score = 34.2 bits (17), Expect = 0.19
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 444 agagacagagaaagagataga 464
           ||||| |||||||||||||||
Sbjct: 747 agagatagagaaagagataga 767


 Score = 32.2 bits (16), Expect = 0.76
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 488 aagggatagagataga 503
           ||||||||||||||||
Sbjct: 830 aagggatagagataga 845


 Score = 32.2 bits (16), Expect = 0.76
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 441 gacagagacagagaaagaga 460
           |||||||| |||||||||||
Sbjct: 660 gacagagatagagaaagaga 679


 Score = 30.2 bits (15), Expect = 3.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 216 agagacagagataga 230
           |||||||||||||||
Sbjct: 657 agagacagagataga 671


>Contig-U12899-1 (Contig-U12899-1Q) /CSM_Contig/Contig-U12899-1Q.Seq.d
          Length = 3185

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 9    ccaccttcatcatcctcatcatca 32
            ||||| ||||||||||||||||||
Sbjct: 1697 ccaccatcatcatcctcatcatca 1720


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4820
Number of Sequences: 6905
Number of extensions: 4820
Number of successful extensions: 665
Number of sequences better than 10.0: 105
length of query: 694
length of database: 5,674,871
effective HSP length: 16
effective length of query: 678
effective length of database: 5,564,391
effective search space: 3772657098
effective search space used: 3772657098
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.12
Homology vs DNA 
Query= Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Contig-U04043-1Q.Seq.d
         (694 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061537) Dictyostelium discoideum slug cDNA, clone SLE583.      811   0.0    3
(FC716147) CBBG10620.fwd CBBG Lottia gigantea 12,15,18h embr...    36   8e-07  6
(BJ345339) Dictyostelium discoideum cDNA clone:dda23k10, 3' ...    32   9e-06  5
(AC121016) Rattus norvegicus clone CH230-413D11, *** SEQUENC...    54   0.007  1
(AC118073) Rattus norvegicus clone CH230-371G1, *** SEQUENCI...    54   0.007  1
(BJ602273) Physcomitrella patens subsp. patens cDNA clone:pp...    32   0.012  4
(DC951995) Physcomitrella patens subsp. patens cDNA, clone:p...    32   0.018  4
(DY675903) STRCW16JX cold-stressed Fragaria vesca seedlings ...    52   0.029  1
(DV122918) CV03034B2F10.f1 CV03-normalized library Euphorbia...    52   0.029  1
(AC133184) Mus musculus BAC clone RP24-186A17 from chromosom...    48   0.053  3
(AZ910766) RPCI-24-174F9.TJ RPCI-24 Mus musculus genomic clo...    38   0.072  3
(AC181162) Strongylocentrotus purpuratus clone R3-16C12, WOR...    50   0.11   1
(AC178785) Strongylocentrotus purpuratus clone R3-29P4, WORK...    50   0.11   1
(AC178730) Strongylocentrotus purpuratus clone R3-13D8, WORK...    50   0.11   1
(AC178525) Strongylocentrotus purpuratus clone R3-3032J21, W...    50   0.11   1
(GD250855) HLUTR3CH_T3_028_A12_02APR2006_096 HLUTR3CH Humulu...    50   0.11   1
(EY361573) CAWZ7794.fwd CAWZ Helobdella robusta Primary Late...    50   0.11   1
(AC166206) Oryctolagus cuniculus clone LB1-234K11, WORKING D...    46   0.19   2
(GC883796) Sequence 199041 from patent US 6812339.                 42   0.21   2
(GC883795) Sequence 199040 from patent US 6812339.                 42   0.21   2
(GC883794) Sequence 199039 from patent US 6812339.                 42   0.21   2
(GC883793) Sequence 199038 from patent US 6812339.                 42   0.21   2
(GC883792) Sequence 199037 from patent US 6812339.                 42   0.21   2
(GC883791) Sequence 199036 from patent US 6812339.                 42   0.21   2
(BJ364320) Dictyostelium discoideum cDNA clone:ddc31f08, 5' ...    36   0.22   3
(BJ968840) Physcomitrella patens subsp. patens cDNA clone:pp...    32   0.30   3
(BJ971523) Physcomitrella patens subsp. patens cDNA clone:pp...    32   0.37   3
(AC127332) Mus musculus BAC clone RP23-136I1 from 5, complet...    48   0.45   1
(DD389766) CA125 Gene and Its Use for Diagnostic and Therape...    48   0.45   1
(CS741980) Sequence 9976 from Patent WO2005083127.                 48   0.45   1
(AL035476) Plasmodium falciparum MAL4P3.                           48   0.45   1
(AC008734) Homo sapiens chromosome 19 clone CTD-2529P6, comp...    48   0.45   1
(AL166032) Tetraodon nigroviridis genome survey sequence T7 ...    48   0.45   1
(BI815741) PfESToaa32b05.y1 Plasmodium falciparum 3D7 asexua...    48   0.45   1
(FF535730) CASRG78TF CASR Manihot esculenta cDNA 5', mRNA se...    48   0.45   1
(FF534410) CASR242TF CASR Manihot esculenta cDNA 5', mRNA se...    48   0.45   1
(AC178320) Strongylocentrotus purpuratus clone R3-1114J15, W...    38   0.70   6
(CE792491) tigr-gss-dog-17000330898841 Dog Library Canis lup...    36   0.91   2
(AC110366) Rattus norvegicus clone CH230-40O18, *** SEQUENCI...    32   0.92   2
(AC109706) Rattus norvegicus clone CH230-288L2, *** SEQUENCI...    32   0.93   2
(BJ976084) Physcomitrella patens subsp. patens cDNA clone:pp...    32   1.1    3
(FC347009) CAYY24229.rev CAYY Physcomitrella patens subsp. p...    32   1.2    3
(DC951446) Physcomitrella patens subsp. patens cDNA, clone:p...    32   1.3    3
(FC325905) CAYY10049.rev CAYY Physcomitrella patens subsp. p...    32   1.3    3
(G27268) human STS CHLC.GATA176C01.P66552 clone GATA176C01, ...    34   1.5    3
(EI023123) bb32g12.r Dekkera bruxellensis Random Genomic Lib...    28   1.6    4
(AL954299) Mouse DNA sequence from clone RP23-399D3 on chrom...    40   1.6    3
(AM269955) Aspergillus niger contig An01c0080, complete genome.    46   1.8    1
(AC155529) Zea mays strain B73 clone ZMMBBc0122K18, *** SEQU...    46   1.8    1
(AC155470) Zea mays strain B73 clone ZMMBBb0547C10, *** SEQU...    46   1.8    1
(CR940353) Theileria annulata genomic DNA chromosome 4.            46   1.8    1
(AC190701) Zea mays chromosome 3 clone ZMMBBb-547C10; ZMMBBb...    46   1.8    1
(AC184495) Strongylocentrotus purpuratus clone R3-13H9, WORK...    46   1.8    1
(AC168487) Strongylocentrotus purpuratus clone R3-3117I23, W...    46   1.8    1
(DE348463) Bombyx mori genomic DNA, BAC clone:BET_057_N05.         46   1.8    1
(DW594568) CGX113-G06.y1d-s SHGC-CGX2 Gasterosteus aculeatus...    46   1.8    1
(DW593368) CGX106-F02.x1d-t SHGC-CGX2 Gasterosteus aculeatus...    46   1.8    1
(DW036613) CFW267-D02.y1d-s SHGC-CFW2 Gasterosteus aculeatus...    46   1.8    1
(DW036314) CFW265-F03.x1d-t SHGC-CFW2 Gasterosteus aculeatus...    46   1.8    1
(DW035488) CFW260-E07.y1d-s SHGC-CFW2 Gasterosteus aculeatus...    46   1.8    1
(DW026918) CFW236-E10.y1d-s SHGC-CFW2 Gasterosteus aculeatus...    46   1.8    1
(DN676541) CFW93-B07.x1d-t SHGC-CFW Gasterosteus aculeatus c...    46   1.8    1
(DN656534) CEC23-F06.y1d-s SHGC-CEC Gasterosteus aculeatus c...    46   1.8    1
(AM982221) Dicentrarchus labrax EST, clone mge014P0014A08, 3...    46   1.8    1
(CA128107) SCAGLR2033B03.g LR2 Saccharum officinarum cDNA cl...    46   1.8    1
(EI019493) bb72g01.r Dekkera bruxellensis Random Genomic Lib...    28   1.9    4
(EI017325) bb64c10.r Dekkera bruxellensis Random Genomic Lib...    28   1.9    4
(EI019341) bb41a11.r Dekkera bruxellensis Random Genomic Lib...    28   2.0    4
(AC113662) Rattus norvegicus clone CH230-154O1, WORKING DRAF...    38   2.0    4
(DJ450827) Method for analysing genome using microsatellite ...    32   2.5    3
(FC574972) CAXP11422.fwd CAXP Lottia gigantea from head, foo...    28   2.5    4
(BJ333013) Dictyostelium discoideum cDNA clone:dda41n01, 5' ...    36   2.8    2
(FP236495) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.4    2
(AC215275) Macaca mulatta chromosome UNKNOWN clone CH250-246...    32   3.4    2
(AC212032) Macaca mulatta chromosome UNKNOWN clone CH250-265...    32   3.4    2
(AC215325) Macaca mulatta chromosome UNKNOWN clone CH250-58M...    32   3.5    2
(AC216088) Macaca mulatta chromosome UNKNOWN clone CH250-91P...    32   3.5    2
(AC205189) MACACA MULATTA BAC clone CH250-86P8 from chromoso...    32   3.5    2
(AC215618) Nomascus leucogenys chromosome UNK clone CH271-84...    34   3.5    2
(AC206909) Macaca mulatta chromosome UNKNOWN clone CH250-436...    32   3.5    2
(CR194805) Forward strand read from insert in 5'HPRT inserti...    30   4.1    3
(CR233315) Forward strand read from insert in 5'HPRT inserti...    34   4.3    3
(DW680180) EST003661 Trichophyton rubrum cDNA library 0 Tric...    32   4.6    2
(AC157961) Strongylocentrotus purpuratus clone R3-4002E12, W...    44   4.6    3
(EV815430) BGBV-aae55b06.b1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EV820949) BGBV-aae97b09.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EW999242) BGBV-aae31b11.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(ES490330) BGBV-aad03a09.b1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EX003021) BGBV-aae12b08.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EW999339) BGBV-aae32h06.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EW999767) BGBV-aae49d05.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EV821706) BGBV-aae62g01.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(EV815530) BGBV-aae56d01.b1 Snail_EST_pSMART Biomphalaria gl...    34   4.7    2
(BJ376465) Dictyostelium discoideum cDNA clone:ddc28k18, 3' ...    32   4.8    3
(AL167109) Tetraodon nigroviridis genome survey sequence PUC...    32   4.8    2
(EX000644) BGBV-aae25b09.g1 Snail_EST_pSMART Biomphalaria gl...    34   4.8    2
(AC146837) Canis lupus familiaris clone RP81-48L12, WORKING ...    36   4.9    6
(CD499434) CDA39-C11.x1d-t SHGC-CDA Gasterosteus aculeatus c...    42   5.0    2
(AJ922859) Theileria annulata EST, clone TAC19h02_q1ka.            40   5.2    2
(BP927014) Populus nigra mRNA, clone: PnFL1-066_J23.f, 5'end...    36   6.2    2
(BC046665) Xenopus laevis similar to RU2S, mRNA (cDNA clone ...    44   7.0    1
(AY330169) Cyprinus carpio nucleolin gene, complete cds.           44   7.0    1
(AC110262) Mus musculus chromosome 17, clone RP23-291L10, co...    44   7.0    1
(AC104325) Mus musculus strain C57BL/6J clone rp23-204m3 map...    44   7.0    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    44   7.0    1
(AP004525) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   7.0    1
(AL731598) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   7.0    1
(AL662961) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   7.0    1
(AE017341) Cryptococcus neoformans var. neoformans JEC21 chr...    44   7.0    1
(AC133780) Medicago truncatula clone mth2-27f3, complete seq...    44   7.0    1
(EA694235) Sequence 73114 from patent US 7365185.                  44   7.0    1
(GC699846) Sequence 15091 from patent US 6812339.                  44   7.0    1
(AC231492) Homo sapiens FOSMID clone ABC10-44620600B4 from c...    44   7.0    1
(AC133435) Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cance...    44   7.0    1
(AC100791) Homo sapiens chromosome 17, clone RP11-353N14, co...    44   7.0    1
(AC019208) Homo sapiens BAC clone RP11-439J5 from 2, complet...    44   7.0    1
(AC123384) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 18 ...    44   7.0    1
(AC123377) Rattus norvegicus clone CH230-281O8, WORKING DRAF...    44   7.0    1
(AC096933) Rattus norvegicus clone CH230-19B12, *** SEQUENCI...    44   7.0    1
(AC095026) Canis lupus familiaris clone RP81-245G16, WORKING...    44   7.0    1
(AC091541) Canis lupus familiaris clone RP81-92D9, WORKING D...    44   7.0    1
(AC205470) Zea mays chromosome 7 clone CH201-485P18; ZMMBBc0...    44   7.0    1
(AC184407) Strongylocentrotus purpuratus clone R3-3105G7, WO...    44   7.0    1
(AC181105) Strongylocentrotus purpuratus clone R3-3042E01, W...    44   7.0    1
(AC178787) Strongylocentrotus purpuratus clone R3-21K07, WOR...    44   7.0    1
(AC178526) Strongylocentrotus purpuratus clone R3-3032J6, WO...    44   7.0    1
(AC178113) Strongylocentrotus purpuratus clone R3-1117C3, WO...    44   7.0    1
(AC176389) Strongylocentrotus purpuratus clone R3-3047C11, W...    44   7.0    1
(AC176066) Strongylocentrotus purpuratus clone R3-3024E19, W...    44   7.0    1
(AC168412) Strongylocentrotus purpuratus clone R3-4002E12, W...    44   7.0    1
(AL305713) Tetraodon nigroviridis genome survey sequence T7 ...    44   7.0    1
(DH689717) Rattus norvegicus DNA, BAC clone: RNB1-245P23, 3'...    44   7.0    1
(CZ087305) OM__Ba0089B12.r OM__Ba Oryza minuta genomic clone...    44   7.0    1
(CE112931) tigr-gss-dog-17000324888871 Dog Library Canis lup...    44   7.0    1
(AG049780) Pan troglodytes DNA, clone: PTB-030A04.R.               44   7.0    1
(EL518396) EST_omor_eva_15401 omoreva mixed_tissue Osmerus m...    44   7.0    1
(EH034759) HA_MX0_86e06_SP6 Lobster Multiple Tissues, Normal...    44   7.0    1
(EE502213) EX24LIG2_UP_007_C08_20JAN2005_060 Brassica napus ...    44   7.0    1
(DW600843) CGX150-H02.x1d-t SHGC-CGX2 Gasterosteus aculeatus...    44   7.0    1
(DW029176) CFW249-F06.x1d-t SHGC-CFW2 Gasterosteus aculeatus...    44   7.0    1
(DV034416) XLTCR132 Cornea-lens transdifferentiation library...    44   7.0    1
(DT987407) CLJ231-B02.y1d-s SHGC-CLJ Gasterosteus aculeatus ...    44   7.0    1
(DR380601) 976714 CERES-148 Arabidopsis thaliana cDNA clone ...    44   7.0    1
(CV257795) WS0247.B21_K21 PTxD-ICC-N-A-14 Populus trichocarp...    44   7.0    1
(CF701281) CCAF145TO C.neoformans strain JEC21 Cryptococcus ...    44   7.0    1
(GE820474) EST_scau_evk_962295 scauevk mixed_tissue Sebastes...    44   7.0    1
(FE774699) CCAG7843.b3 CCAG Petrolisthes cinctipes heart, gi...    44   7.0    1
(FE761565) CAYF8280.g1 CAYF Petrolisthes cinctipes heart, wh...    44   7.0    1
(FE761564) CAYF8280.b1 CAYF Petrolisthes cinctipes heart, wh...    44   7.0    1
(FE111287) LV_HC_RA054A15f Litopenaeus vannamei hemocyte cDN...    44   7.0    1
(FE111286) LV_HC_RA054O13r Litopenaeus vannamei hemocyte cDN...    44   7.0    1
(AW584976) N211142e MHAM Medicago truncatula/Glomus versifor...    44   7.0    1
(FC313358) CAIC3867.fwd CAIC Nematostella vectensis Nemve wh...    44   7.0    1
(FC281340) CAGN24761.fwd CAGN Nematostella vectensis Nemve m...    44   7.0    1
(FC279353) CAGN23683.fwd CAGN Nematostella vectensis Nemve m...    44   7.0    1
(FC278391) CAGN23171.fwd CAGN Nematostella vectensis Nemve m...    44   7.0    1
(FC274255) CAGN20931.fwd CAGN Nematostella vectensis Nemve m...    44   7.0    1
(FC272372) CAGN19931.fwd CAGN Nematostella vectensis Nemve m...    44   7.0    1
(FC267703) CAGN17266.fwd CAGN Nematostella vectensis Nemve m...    44   7.0    1
(FC254374) CAGH9313.fwd CAGH Nematostella vectensis Nemve La...    44   7.0    1
(FC246665) CAGH438.fwd CAGH Nematostella vectensis Nemve Lat...    44   7.0    1
(FC246365) CAGH4224.fwd CAGH Nematostella vectensis Nemve La...    44   7.0    1
(FC246364) CAGH4224.rev CAGH Nematostella vectensis Nemve La...    44   7.0    1
(FC245056) CAGH3495.fwd CAGH Nematostella vectensis Nemve La...    44   7.0    1
(FC245055) CAGH3495.rev CAGH Nematostella vectensis Nemve La...    44   7.0    1
(FC235118) CAGH10412.fwd CAGH Nematostella vectensis Nemve L...    44   7.0    1
(FC226681) CAGF9291.fwd CAGF Nematostella vectensis Nemve Ea...    44   7.0    1
(FC226680) CAGF9291.rev CAGF Nematostella vectensis Nemve Ea...    44   7.0    1
(FC226270) CAGF9062.fwd CAGF Nematostella vectensis Nemve Ea...    44   7.0    1
(FC214992) CAGF3005.fwd CAGF Nematostella vectensis Nemve Ea...    44   7.0    1
(FC212721) CAGF1732.fwd CAGF Nematostella vectensis Nemve Ea...    44   7.0    1
(FC207355) CAGF10584.fwd CAGF Nematostella vectensis Nemve E...    44   7.0    1
(FC205375) CACG565.fwd CACG Nematostella vectensis nemve mix...    44   7.0    1
(FC197482) CAAD5283.fwd CAAD Nematostella vectensis nemve_P1...    44   7.0    1
(FC192185) CAAD1683.fwd CAAD Nematostella vectensis nemve_P1...    44   7.0    1
(FC184881) CAAB5403.fwd CAAB Nematostella vectensis nemve_P1...    44   7.0    1
(FC184045) CAAB4822.fwd CAAB Nematostella vectensis nemve_P1...    44   7.0    1
(FC184044) CAAB4822.rev CAAB Nematostella vectensis nemve_P1...    44   7.0    1
(EY896380) RR1EB82JQ RR1(CS) Raphanus raphanistrum subsp. ma...    44   7.0    1
(BJ376474) Dictyostelium discoideum cDNA clone:ddc28m18, 3' ...    32   7.3    3
(CR848714) Wallaby DNA sequence from clone MEKBa-460J13.           38   8.8    3
(AC159197) Mus musculus BAC clone RP23-421P10 from chromosom...    36   8.9    3
(AC201368) Strongylocentrotus purpuratus clone R3-17C9, WORK...    32   9.1    5
(BP922072) Populus nigra mRNA, clone: PnFL1-003_G03.f, 5'end...    36   9.1    2
(L16379) Human chromosome 2 STS UT1265, sequence tagged site.      32   9.2    3
(BW878561) Branchiostoma floridae cDNA, neurula clone:bfne13...    40   9.7    2

>(AU061537) Dictyostelium discoideum slug cDNA, clone SLE583.
          Length = 695

 Score =  811 bits (409), Expect(3) = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Plus


Query: 1   gtccacccccaccttcatcatcctcatcatcacctgcaccacttggtggaggctcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtccacccccaccttcatcatcctcatcatcacctgcaccacttggtggaggctcaaatt 60


Query: 61  atagagatccatattatgatggtagaggtagaggtttgagaggaggaccaccaccataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atagagatccatattatgatggtagaggtagaggtttgagaggaggaccaccaccataca 120


Query: 121 gagataatcgtgataacattagaccaccagtagatagatatagagataacaaccgaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagataatcgtgataacattagaccaccagtagatagatatagagataacaaccgaggtg 180


Query: 181 gaggtggtgattgggatagagaccgtgattgggacagagacagagatagaattgatcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggtggtgattgggatagagaccgtgattgggacagagacagagatagaattgatcata 240


Query: 241 gagatcgtgattgggatagattggatgaccgtggtagagatagggattttagagatcgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagatcgtgattgggatagattggatgaccgtggtagagatagggattttagagatcgtg 300


Query: 301 acatcagagacagagatttcagggaccgtgatagagattttagagatattcgtgatagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatcagagacagagatttcagggaccgtgatagagattttagagatattcgtgatagag 360


Query: 361 acctctgggagagagatagattattggatcgtgaaagagacctccgtga 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctctgggagagagatagattattggatcgtgaaagagacctccgtga 409

 Score =  331 bits (167), Expect(3) = 0.0
 Identities = 167/167 (100%)
 Strand = Plus / Plus


Query: 475 caatcgatcatgtaagggatagagatagacttttagatggtcgtgatggtagactatcaa 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caatcgatcatgtaagggatagagatagacttttagatggtcgtgatggtagactatcaa 534


Query: 535 ttgatagtagagatagaatgttggatagaaatgatagaattattgataatggtagagata 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttgatagtagagatagaatgttggatagaaatgatagaattattgataatggtagagata 594


Query: 595 gaggtgatagaattattgataatggtagggatagaatatattcatct 641
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaggtgatagaattattgataatggtagggatagaatatattcatct 641

 Score = 26.3 bits (13), Expect(3) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 682 cacttctcctact 694
           |||||||||||||
Sbjct: 682 cacttctcctact 694

 Score = 54.0 bits (27), Expect(5) = 5e-18
 Identities = 30/31 (96%)
 Strand = Plus / Plus


Query: 566 tgatagaattattgataatggtagagataga 596
           |||||||||||||||||||||||| ||||||
Sbjct: 599 tgatagaattattgataatggtagggataga 629

 Score = 52.0 bits (26), Expect(5) = 5e-18
 Identities = 29/30 (96%)
 Strand = Plus / Plus


Query: 351 cgtgatagagacctctgggagagagataga 380
           |||||||||||||||||||| |||||||||
Sbjct: 405 cgtgatagagacctctgggaaagagataga 434

 Score = 30.2 bits (15), Expect(5) = 5e-18
 Identities = 18/19 (94%)
 Strand = Plus / Plus


Query: 196 atagagaccgtgattggga 214
           ||||||| |||||||||||
Sbjct: 238 atagagatcgtgattggga 256

 Score = 28.2 bits (14), Expect(5) = 5e-18
 Identities = 17/18 (94%)
 Strand = Plus / Plus


Query: 279 gatagggattttagagat 296
           ||||| ||||||||||||
Sbjct: 330 gatagagattttagagat 347

 Score = 26.3 bits (13), Expect(5) = 5e-18
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 215 cagagacagagat 227
           |||||||||||||
Sbjct: 305 cagagacagagat 317

 Score = 54.0 bits (27), Expect(5) = 5e-13
 Identities = 30/31 (96%)
 Strand = Plus / Plus


Query: 599 tgatagaattattgataatggtagggataga 629
           |||||||||||||||||||||||| ||||||
Sbjct: 566 tgatagaattattgataatggtagagataga 596

 Score = 34.2 bits (17), Expect(5) = 5e-13
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 543 agagatagaatgttgga 559
           |||||||||||||||||
Sbjct: 426 agagatagaatgttgga 442

 Score = 30.2 bits (15), Expect(5) = 5e-13
 Identities = 18/19 (94%)
 Strand = Plus / Plus


Query: 238 atagagatcgtgattggga 256
           ||||||| |||||||||||
Sbjct: 196 atagagaccgtgattggga 214

 Score = 28.2 bits (14), Expect(5) = 5e-13
 Identities = 17/18 (94%)
 Strand = Plus / Plus


Query: 330 gatagagattttagagat 347
           ||||| ||||||||||||
Sbjct: 279 gatagggattttagagat 296

 Score = 26.3 bits (13), Expect(5) = 5e-13
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 305 cagagacagagat 317
           |||||||||||||
Sbjct: 215 cagagacagagat 227

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 572,810,532
Number of extensions: 34267642
Number of successful extensions: 3044033
Number of sequences better than 10.0: 191
Length of query: 694
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 670
Effective length of database: 99,340,224,878
Effective search space: 66557950668260
Effective search space used: 66557950668260
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Contig-U04043-1Q.Seq.d
         (694 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF083683_1(AF083683|pid:none) Arabidopsis thaliana clone sps87 u...    33   8.3

>AF083683_1(AF083683|pid:none) Arabidopsis thaliana clone sps87
           unknown mRNA.
          Length = 198

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 377 ISLPEVSITNISKISITVPEISVSDVTISKIPISTTVIQSIPI 249
           + +P V+I  +    +TVP++ V  VT+ K+P+    +  +P+
Sbjct: 56  LPVPPVTIPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPV 98

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 513,252,648
Number of extensions: 8378709
Number of successful extensions: 19836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19792
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,061,185,681
Length adjustment: 124
Effective length of query: 107
Effective length of database: 655,898,129
Effective search space: 70181099803
Effective search space used: 70181099803
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.83  gvh: 0.37  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for Contig-U04043-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0