Contig-U04034-1
Contig ID Contig-U04034-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04034-1 (Contig-U04034-1Q) /CSM_Contig/Contig-U04034-1Q.Seq.d
TTATTTTTTTTTTTTTTAATAATTTATTTAACATTCATATAAATTCTTTG
AACCTTTTGAAGATCTAATAAAATCTTCATGTGGAGTATATTGAATAGTT
TGATCAATTTCTAAAATCTTTTTGAGACAATTACCAACATCACGAGTTGC
TTTTTCATCTTGAGCAGTCTTTGTCCAAACACTTATTTTATCACCATTCT
TTCTAGAGTTATAAACGATACCACAAATCTCATCACTAGAGTCAAAGGTT
TCACCAACACAAGCCATGACACTTTGAAGCCATTGATTATCACAACGACT
CTTATCTTTGACCATAACAAACCATTTTCCACCTCTCTTATTTGATTCGT
GTTCCCATTTTGGTTCGATATCATCTTTGAATAAATGGTAGCTGCTACCT
TGTTTTAAATTTGATACGTTTGGAAGATTGTTAAATACACACCAAAAGTC
TTCAACTGAATCAAAGCTAATGACTTTTTTTAAAGAGTCAACCCAATGTT
CTGGATTGATTTTACCACTTTGATAATCGTACCATAACGACCATCTATTT
TGAAGAGGATGTTTAATTAAATAAGTGTTTGGACAAAGACTGCTCAAGAT
GAAAAAGCAACTCGTGATGTTGGTAATTGTCTCAAAAAGATTTTAGAAAT
TGATCAAACTATTCAATATACTCCACATGAAGATTTTATTAGATCTTCAA
AAGGTTCAAAGAATTTATATGAATGTTAAATAAATTATTAAAAAAAAAAA
AAATAA

Gap no gap
Contig length 756
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 2
Link to clone list U04034
List of clone(s)

est1=SLI688Z,1,462
est2=SLE488E,357,758
Translated Amino Acid sequence
lffffliiyltfi*il*tf*rsnkifmwsilnslinf*NLFETITNITSCFFILSSLCPN
TYFITILSRVINDTTNLITRVKGFTNTSHDTLKPLIITTTLIFDHNKPFSTSLI*fvfpf
wfdiife*mvaatlf*i*yvwkivkytpkvfn*ikandff*rvnpmfwidfttliivp*r
psilkrmfn*isvwtktaqdekatrdvgnclkkileidqtiqytphedfirsskgsknly
ec*iny*kkkk*


Translated Amino Acid sequence (All Frames)
Frame A:
lffffliiyltfi*il*tf*rsnkifmwsilnslinf*NLFETITNITSCFFILSSLCPN
TYFITILSRVINDTTNLITRVKGFTNTSHDTLKPLIITTTLIFDHNKPFSTSLI*fvfpf
wfdiife*mvaatlf*i*yvwkivkytpkvfn*ikandff*rvnpmfwidfttliivp*r
psilkrmfn*isvwtktaqdekatrdvgnclkkileidqtiqytphedfirsskgsknly
ec*iny*kkkk*


Frame B:
yffff**fi*hsykffepfedliksscgvy*iv*siskiflrqlptsrvafss*avfvqt
lilspfflel*tipqissleskvsptqamtl*sh*lsqrllsltitnhfppllfdscshf
gsisslnkw*llpcfkfdtfgrllnthqksstesklmtffkestqcsglilpl**syhnd
hlf*rgclik*vfgqrllkmkkqlvmlvivskrf*kliklfnilhmkilldlqkvqriym
nvk*iikkkkn


Frame C:
iffffnnlfnihinslnllki**nlhveyie*fdqflksf*dnyqhhellfhleqslskh
lfyhhsf*sykryhkshh*sqrfhqhkp*hfeaidyhndsyl*p*qtifhlsylirvpil
vryhl*ingscylvlnlirledc*ihtkslqlnqs**lflksqpnvld*fyhfdnrtitt
iyfeedv*lnkcldkdcsr*ksns*cw*lsqkdfrn*snysiyst*rfy*ifkrfkefi*
mlnkllkkkki


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U04034-1 (Contig-U04034-1Q)
/CSM_Contig/Contig-U04034-1Q.Seq.d
(756 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04034-1 (Contig-U04034-1Q) /CSM_Contig/Conti... 1390 0.0
Contig-U12855-1 (Contig-U12855-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U12293-1 (Contig-U12293-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U14751-1 (Contig-U14751-1Q) /CSM_Contig/Conti... 32 0.83
Contig-U14285-1 (Contig-U14285-1Q) /CSM_Contig/Conti... 32 0.83
Contig-U13371-1 (Contig-U13371-1Q) /CSM_Contig/Conti... 32 0.83
Contig-U12335-1 (Contig-U12335-1Q) /CSM_Contig/Conti... 32 0.83
Contig-U12072-1 (Contig-U12072-1Q) /CSM_Contig/Conti... 32 0.83
Contig-U11792-1 (Contig-U11792-1Q) /CSM_Contig/Conti... 32 0.83
Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Conti... 32 0.83

>Contig-U04034-1 (Contig-U04034-1Q) /CSM_Contig/Contig-U04034-1Q.Seq.d
Length = 756

Score = 1390 bits (701), Expect = 0.0
Identities = 715/722 (99%)
Strand = Plus / Plus


Query: 18 aataatttatttaacattcatataaattctttgaaccttttgaagatctaataaaatctt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 aataatttatttaacattcatataaattctttgaaccttttgaagatctaataaaatctt 77


Query: 78 catgtggagtatattgaatagtttgatcaatttctaaaatctttttgagacaattaccaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 catgtggagtatattgaatagtttgatcaatttctaaaatctttttgagacaattaccaa 137


Query: 138 catcacgagttgctttttcatcttgagcagtctttgtccaaacacttattttatcaccat 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 catcacgagttgctttttcatcttgagcagtctttgtccaaacacttattttatcaccat 197


Query: 198 tctttctagagttataaacgataccacaaatctcatcactagagtcaaaggtttcaccaa 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tctttctagagttataaacgataccacaaatctcatcactagagtcaaaggtttcaccaa 257


Query: 258 cacaagccatgacactttgaagccattgattatcacaacgactcttatctttgaccataa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cacaagccatgacactttgaagccattgattatcacaacgactcttatctttgaccataa 317


Query: 318 caaaccattttccacctctcttatttgattcgtgttcccattttggttcgatatcatctt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caaaccattttccacctctcttatttgattcgtgttcccattttggttcgatatcatctt 377


Query: 378 tgaataaatggtagctgctaccttgttttaaatttgatacgtttggaagattgttaaata 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgaataaatggtagctgctaccttgttttaaatttgatacgtttggaagattgttaaata 437


Query: 438 cacaccaaaagtcttcaactgaatcaaagctaatgacnnnnnnnaaagagtcaacccaat 497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 438 cacaccaaaagtcttcaactgaatcaaagctaatgactttttttaaagagtcaacccaat 497


Query: 498 gttctggattgattttaccactttgataatcgtaccataacgaccatctattttgaagag 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gttctggattgattttaccactttgataatcgtaccataacgaccatctattttgaagag 557


Query: 558 gatgtttaattaaataagtgtttggacaaagactgctcaagatgaaaaagcaactcgtga 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gatgtttaattaaataagtgtttggacaaagactgctcaagatgaaaaagcaactcgtga 617


Query: 618 tgttggtaattgtctcaaaaagattttagaaattgatcaaactattcaatatactccaca 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgttggtaattgtctcaaaaagattttagaaattgatcaaactattcaatatactccaca 677


Query: 678 tgaagattttattagatcttcaaaaggttcaaagaatttatatgaatgttaaataaatta 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgaagattttattagatcttcaaaaggttcaaagaatttatatgaatgttaaataaatta 737


Query: 738 tt 739
||
Sbjct: 738 tt 739


Score = 339 bits (171), Expect = 3e-93
Identities = 171/171 (100%)
Strand = Plus / Minus


Query: 569 aaataagtgtttggacaaagactgctcaagatgaaaaagcaactcgtgatgttggtaatt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaataagtgtttggacaaagactgctcaagatgaaaaagcaactcgtgatgttggtaatt 129


Query: 629 gtctcaaaaagattttagaaattgatcaaactattcaatatactccacatgaagatttta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtctcaaaaagattttagaaattgatcaaactattcaatatactccacatgaagatttta 69


Query: 689 ttagatcttcaaaaggttcaaagaatttatatgaatgttaaataaattatt 739
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttagatcttcaaaaggttcaaagaatttatatgaatgttaaataaattatt 18


Score = 339 bits (171), Expect = 3e-93
Identities = 171/171 (100%)
Strand = Plus / Minus


Query: 18 aataatttatttaacattcatataaattctttgaaccttttgaagatctaataaaatctt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aataatttatttaacattcatataaattctttgaaccttttgaagatctaataaaatctt 680


Query: 78 catgtggagtatattgaatagtttgatcaatttctaaaatctttttgagacaattaccaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catgtggagtatattgaatagtttgatcaatttctaaaatctttttgagacaattaccaa 620


Query: 138 catcacgagttgctttttcatcttgagcagtctttgtccaaacacttattt 188
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 catcacgagttgctttttcatcttgagcagtctttgtccaaacacttattt 569


>Contig-U12855-1 (Contig-U12855-1Q) /CSM_Contig/Contig-U12855-1Q.Seq.d
Length = 720

Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 53 ccttttgaagatctaata 70
||||||||||||||||||
Sbjct: 47 ccttttgaagatctaata 30


Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 687 tattagatcttcaaaagg 704
||||||||||||||||||
Sbjct: 30 tattagatcttcaaaagg 47


>Contig-U12293-1 (Contig-U12293-1Q) /CSM_Contig/Contig-U12293-1Q.Seq.d
Length = 984

Score = 36.2 bits (18), Expect = 0.053
Identities = 21/22 (95%)
Strand = Plus / Minus


Query: 449 tcttcaactgaatcaaagctaa 470
||||||||||||||||| ||||
Sbjct: 363 tcttcaactgaatcaaaactaa 342


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9957
Number of Sequences: 6905
Number of extensions: 9957
Number of successful extensions: 965
Number of sequences better than 10.0: 54
length of query: 756
length of database: 5,674,871
effective HSP length: 16
effective length of query: 740
effective length of database: 5,564,391
effective search space: 4117649340
effective search space used: 4117649340
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.12
Homology vs DNA
Query= Contig-U04034-1 (Contig-U04034-1Q) /CSM_Contig/Contig-U04034-1Q.Seq.d
(756 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU053456) Dictyostelium discoideum slug cDNA, clone SLI688. 880 0.0 1
(AU035012) Dictyostelium discoideum slug cDNA, clone SLE488. 511 0.0 2
(DR705291) Asn_05297 Aspergillus niger pBluescript (EcoRI-Xh... 42 0.046 2
(DR706461) Asn_06930 Aspergillus niger pBluescript (EcoRI-Xh... 42 0.070 2
(DR709115) Asn_10439 Aspergillus niger pBluescript (EcoRI-Xh... 42 0.073 2
(EY224264) CATW1710.rev CATW Aspergillus niger Pelleted fung... 42 0.086 2
(ER789081) PPTAG26TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 0.35 2
(EB368993) nba39f07.y1 Guinea pig eye minus retina and lens.... 38 1.0 2
(EJ034566) 1095454065329 Global-Ocean-Sampling_GS-26-01-01-1... 32 1.3 3
(AC216950) Solanum tuberosum chromosome 6 clone RHPOTKEY094I... 36 2.1 3
(ER589168) 1093016189439 Global-Ocean-Sampling_GS-36-01-01-2... 36 2.1 3
(CU210881) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 2
(AC168028) Bos taurus clone CH240-211B15, WORKING DRAFT SEQU... 40 3.8 2
(ER580034) 1093015832338 Global-Ocean-Sampling_GS-36-01-01-2... 32 7.3 3
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 44 7.7 1
(AP010504) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 7.7 1
(AM473581) Vitis vinifera, whole genome shotgun sequence, co... 44 7.7 1
(CR974426) Pig DNA sequence from clone CH242-238N13 on chrom... 44 7.7 1
(AC069548) Homo sapiens chromosome 10 clone RP11-522H2, comp... 44 7.7 1
(AC024224) Homo sapiens 12 BAC RP11-133L14 (Roswell Park Can... 44 7.7 1
(AC233477) Solanum tuberosum chromosome 5 clone RH103C01, **... 44 7.7 1
(AC217881) Solanum tuberosum chromosome 6 clone RHPOTKEY093D... 44 7.7 1
(AC209521) Solanum tuberosum chromosome 1 clone RH047D21, **... 44 7.7 1
(AC022547) Homo sapiens clone RP11-1A9, 3 unordered pieces. 44 7.7 1
(ER851439) PPTEP33TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 7.7 1
(ER810568) POTKV31TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 7.7 1
(ED256231) AUAC-aap30e02.b1 Ascaris suum whole genome shotgu... 44 7.7 1
(DX431655) BE1030_H21_F IASMA L1 HindIII BAC library Vitis v... 44 7.7 1
(DE925900) Macropus eugenii DNA, BAC clone: MEB1-114M16_F, 5... 44 7.7 1
(CT502669) A BAC library has been constructed from cultivar ... 44 7.7 1
(CT474068) Sus scrofa genomic clone CH242-468A3, genomic sur... 44 7.7 1
(DC596749) Lotus japonicus mRNA, clone: MPD040a02_r, 5' end ... 44 7.7 1
(CB828715) LjNEST89g7r Lotus japonicus nodule library 5 and ... 44 7.7 1

>(AU053456) Dictyostelium discoideum slug cDNA, clone SLI688.
Length = 462

Score = 880 bits (444), Expect = 0.0
Identities = 444/444 (100%)
Strand = Plus / Minus


Query: 18 aataatttatttaacattcatataaattctttgaaccttttgaagatctaataaaatctt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataatttatttaacattcatataaattctttgaaccttttgaagatctaataaaatctt 385


Query: 78 catgtggagtatattgaatagtttgatcaatttctaaaatctttttgagacaattaccaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catgtggagtatattgaatagtttgatcaatttctaaaatctttttgagacaattaccaa 325


Query: 138 catcacgagttgctttttcatcttgagcagtctttgtccaaacacttattttatcaccat 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catcacgagttgctttttcatcttgagcagtctttgtccaaacacttattttatcaccat 265


Query: 198 tctttctagagttataaacgataccacaaatctcatcactagagtcaaaggtttcaccaa 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctttctagagttataaacgataccacaaatctcatcactagagtcaaaggtttcaccaa 205


Query: 258 cacaagccatgacactttgaagccattgattatcacaacgactcttatctttgaccataa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacaagccatgacactttgaagccattgattatcacaacgactcttatctttgaccataa 145


Query: 318 caaaccattttccacctctcttatttgattcgtgttcccattttggttcgatatcatctt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 caaaccattttccacctctcttatttgattcgtgttcccattttggttcgatatcatctt 85


Query: 378 tgaataaatggtagctgctaccttgttttaaatttgatacgtttggaagattgttaaata 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tgaataaatggtagctgctaccttgttttaaatttgatacgtttggaagattgttaaata 25


Query: 438 cacaccaaaagtcttcaactgaat 461
||||||||||||||||||||||||
Sbjct: 24 cacaccaaaagtcttcaactgaat 1

Score = 339 bits (171), Expect = 9e-89
Identities = 171/171 (100%)
Strand = Plus / Plus


Query: 569 aaataagtgtttggacaaagactgctcaagatgaaaaagcaactcgtgatgttggtaatt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaataagtgtttggacaaagactgctcaagatgaaaaagcaactcgtgatgttggtaatt 333


Query: 629 gtctcaaaaagattttagaaattgatcaaactattcaatatactccacatgaagatttta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtctcaaaaagattttagaaattgatcaaactattcaatatactccacatgaagatttta 393


Query: 689 ttagatcttcaaaaggttcaaagaatttatatgaatgttaaataaattatt 739
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttagatcttcaaaaggttcaaagaatttatatgaatgttaaataaattatt 444

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 971,509,563
Number of extensions: 59495159
Number of successful extensions: 4396873
Number of sequences better than 10.0: 33
Length of query: 756
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 732
Effective length of database: 99,340,224,878
Effective search space: 72717044610696
Effective search space used: 72717044610696
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U04034-1 (Contig-U04034-1Q) /CSM_Contig/Contig-U04034-1Q.Seq.d
(756 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55FE0) RecName: Full=Eukaryotic translation initiation factor ... 388 e-107
EU232173_9(EU232173|pid:none) Cucumis sativus clone Fosmid147D19... 164 2e-39
FJ477092_1(FJ477092|pid:none) Hordeum vulgare subsp. vulgare cul... 163 5e-39
AJ699059_1(AJ699059|pid:none) Hordeum vulgare mRNA for putative ... 163 6e-39
DQ443192_1(DQ443192|pid:none) Bombyx mori mRNA cap-binding prote... 159 7e-38
DQ778076_1(DQ778076|pid:none) Pisum sativum cultivar Brutus euka... 159 1e-37
AF530162_1(AF530162|pid:none) Lactuca sativa eukaryotic translat... 158 2e-37
DQ393833_1(DQ393833|pid:none) Nicotiana benthamiana eukaryotic t... 157 4e-37
(Q03389) RecName: Full=Eukaryotic translation initiation factor ... 156 8e-37
EF148406_1(EF148406|pid:none) Populus trichocarpa x Populus delt... 156 8e-37
S26493(S26493)translation initiation factor eIF-4F chain p26 - w... 156 8e-37
M95819_1(M95819|pid:none) Wheat (clone p28-62) initiation factor... 156 8e-37
(P29557) RecName: Full=Eukaryotic translation initiation factor ... 156 8e-37
BT056334_1(BT056334|pid:none) Salmo salar clone ssal-evd-572-138... 154 4e-36
BT073410_1(BT073410|pid:none) Oncorhynchus mykiss clone omyk-evn... 152 8e-36
CR559943_1(CR559943|pid:none) Zebrafish DNA sequence from clone ... 152 1e-35
BT074574_1(BT074574|pid:none) Osmerus mordax clone omor-eva-510-... 152 1e-35
(P48598) RecName: Full=Eukaryotic translation initiation factor ... 150 3e-35
BC085374_1(BC085374|pid:none) Danio rerio zgc:101581, mRNA (cDNA... 150 3e-35
BC078129_1(BC078129|pid:none) Xenopus laevis eIF-4E protein, mRN... 150 3e-35
AY723734_1(AY723734|pid:none) Lycopersicon esculentum cultivar M... 150 3e-35
DQ537341_1(DQ537341|pid:none) Lycopersicon esculentum clone le4I... 150 4e-35
DQ537342_1(DQ537342|pid:none) Lycopersicon esculentum clone le4I... 150 4e-35
AY723733_1(AY723733|pid:none) Lycopersicon esculentum cultivar M... 150 4e-35
DQ022080_1(DQ022080|pid:none) Capsicum annuum cultivar Yolo Wond... 150 4e-35
AF128806_1(AF128806|pid:none) Oryzias latipes cap binding protei... 150 4e-35
AY723739_1(AY723739|pid:none) Capsicum annuum cultivar SC81 euka... 150 5e-35
AF530163_1(AF530163|pid:none) Lactuca sativa eukaryotic translat... 150 5e-35
AK300982_1(AK300982|pid:none) Homo sapiens cDNA FLJ55157 complet... 150 5e-35
AY893901_1(AY893901|pid:none) Synthetic construct Homo sapiens c... 150 5e-35
(P06730) RecName: Full=Eukaryotic translation initiation factor ... 150 5e-35
BC107715_1(BC107715|pid:none) Homo sapiens eukaryotic translatio... 150 5e-35
BT081932_1(BT081932|pid:none) Rana catesbeiana clone rcat-evr-52... 149 7e-35
AK082867_1(AK082867|pid:none) Mus musculus ES cells cDNA, RIKEN ... 149 7e-35
DQ393831_1(DQ393831|pid:none) Cucumis melo cultivar Vedrantais e... 149 7e-35
(P48599) RecName: Full=Eukaryotic translation initiation factor ... 149 9e-35
(O81482) RecName: Full=Eukaryotic translation initiation factor ... 149 9e-35
DQ213184_1(DQ213184|pid:none) Taeniopygia guttata clone 0058P005... 149 9e-35
EU975144_1(EU975144|pid:none) Zea mays clone 472579 eukaryotic t... 149 9e-35
AY699609_1(AY699609|pid:none) Nicotiana tabacum eukaryotic initi... 149 1e-34
(P48600) RecName: Full=Eukaryotic translation initiation factor ... 149 1e-34
AF259801_1(AF259801|pid:none) Lycopersicon esculentum eIF4E mRNA... 148 2e-34
JC5331(JC5331) cap-binding protein p28 - rice &U34598_1(U34598|... 148 2e-34
BT065427_1(BT065427|pid:none) Zea mays full-length cDNA clone ZM... 148 2e-34
AF068714_4(AF068714|pid:none) Caenorhabditis elegans cosmid B034... 148 2e-34
AY890444_1(AY890444|pid:none) Synthetic construct Homo sapiens c... 148 2e-34
AF068714_3(AF068714|pid:none) Caenorhabditis elegans cosmid B034... 147 3e-34
BT057752_1(BT057752|pid:none) Salmo salar clone ssal-sjb-012-215... 147 3e-34
AF521963_1(AF521963|pid:none) Capsicum annuum cultivar Doux Long... 147 3e-34
AY723737_1(AY723737|pid:none) Capsicum annuum cultivar Perennial... 147 3e-34
AY485128_1(AY485128|pid:none) Capsicum chinense cultivar habaner... 147 3e-34
EU106865_1(EU106865|pid:none) Capsicum annuum haplotype pvr2-9 e... 147 4e-34
A86419(A86419) probable eukaryotic translation initiation factor... 147 4e-34
(Q9DFS6) RecName: Full=Eukaryotic translation initiation factor ... 147 4e-34
BC155151_1(BC155151|pid:none) Danio rerio zgc:110154, mRNA (cDNA... 147 4e-34
(Q9C7P2) RecName: Full=Putative eukaryotic translation initiatio... 147 4e-34
EF595685_1(EF595685|pid:none) Cucumis zeyherii translation initi... 147 5e-34
EU967412_1(EU967412|pid:none) Zea mays clone 302706 eukaryotic t... 146 6e-34
AY485131_1(AY485131|pid:none) Capsicum annuum cultivar Dempsey e... 146 6e-34
AM419457_1(AM419457|pid:none) Sus scrofa partial mRNA for elonga... 146 6e-34
AY423375_1(AY423375|pid:none) Pisum sativum cultivar JI2009 euka... 146 8e-34
AF521964_1(AF521964|pid:none) Capsicum annuum cultivar Yolo Y eu... 146 8e-34
BT057406_1(BT057406|pid:none) Salmo salar clone ssal-eve-551-202... 146 8e-34
BT082710_1(BT082710|pid:none) Anoplopoma fimbria clone afim-evh-... 145 1e-33
EU962296_1(EU962296|pid:none) Zea mays clone 241587 eukaryotic t... 145 1e-33
AY485129_1(AY485129|pid:none) Capsicum annuum cultivar PI159234 ... 144 2e-33
EU119958_1(EU119958|pid:none) Solanum lycopersicum cultivar Zhon... 143 5e-33
(O81481) RecName: Full=Eukaryotic translation initiation factor ... 143 7e-33
AY611425_1(AY611425|pid:none) Pisum sativum cultivar PI269818 eu... 142 9e-33
BC159396_1(BC159396|pid:none) Xenopus tropicalis cDNA clone IMAG... 142 9e-33
(Q9P975) RecName: Full=Eukaryotic translation initiation factor ... 142 1e-32
AF176316_2(AF176316|pid:none) Danio rerio eukaryotic translation... 142 1e-32
(Q9PW28) RecName: Full=Eukaryotic translation initiation factor ... 142 1e-32
FM992695_914(FM992695|pid:none) Candida dubliniensis CD36 chromo... 141 2e-32
FM245245_1(FM245245|pid:none) Drosophila melanogaster CG8277 gen... 140 4e-32
AM294135_1(AM294135|pid:none) Drosophila melanogaster CG8277 gen... 140 6e-32
AM294134_1(AM294134|pid:none) Drosophila melanogaster CG8277 gen... 140 6e-32
AM294133_1(AM294133|pid:none) Drosophila melanogaster CG8277 gen... 140 6e-32
AM294139_1(AM294139|pid:none) Drosophila melanogaster CG8277 gen... 139 7e-32
(Q9P974) RecName: Full=Eukaryotic translation initiation factor ... 139 1e-31
AE014296_1203(AE014296|pid:none) Drosophila melanogaster chromos... 139 1e-31
CU928170_813(CU928170|pid:none) Kluyveromyces thermotolerans str... 139 1e-31
U62044_1(U62044|pid:none) Arabidopsis thaliana eukaryotic initia... 137 3e-31
(O04663) RecName: Full=Eukaryotic translation initiation factor ... 137 3e-31
AY611423_1(AY611423|pid:none) Pisum sativum cultivar JI1405 euka... 137 4e-31
(P07260) RecName: Full=Eukaryotic translation initiation factor ... 137 5e-31
CU633438_299(CU633438|pid:none) Podospora anserina genomic DNA c... 134 2e-30
(Q75AV8) RecName: Full=Eukaryotic translation initiation factor ... 134 2e-30
EF577390_1(EF577390|pid:none) Pichia pastoris IF4E-like protein ... 133 5e-30
AM270263_1(AM270263|pid:none) Aspergillus niger contig An12c0060... 132 9e-30
AY849614_1(AY849614|pid:none) Magnaporthe grisea eukaryotic tran... 132 1e-29
AF272369_1(AF272369|pid:none) Pisaster ochraceus eIF4E mRNA, par... 132 2e-29
AM920436_1360(AM920436|pid:none) Penicillium chrysogenum Wiscons... 131 2e-29
AK340791_1(AK340791|pid:none) Acyrthosiphon pisum ACYPI009961 mR... 130 3e-29
AY197743_1(AY197743|pid:none) Hydra vulgaris eIF4E-2 mRNA, parti... 129 1e-28
AE014298_166(AE014298|pid:none) Drosophila melanogaster chromoso... 129 1e-28
AE014296_1484(AE014296|pid:none) Drosophila melanogaster chromos... 128 2e-28
(O74743) RecName: Full=Eukaryotic translation initiation factor ... 128 2e-28
AK059989_1(AK059989|pid:none) Oryza sativa Japonica Group cDNA c... 125 1e-27
CR382125_913(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 125 2e-27
(Q3UTA9) RecName: Full=Eukaryotic translation initiation factor ... 125 2e-27
EU959765_1(EU959765|pid:none) Zea mays clone 219894 eukaryotic t... 124 2e-27
BT036141_1(BT036141|pid:none) Zea mays full-length cDNA clone ZM... 124 3e-27
BT080285_1(BT080285|pid:none) Caligus clemensi clone ccle-evs-51... 124 3e-27
BT049502_1(BT049502|pid:none) Salmo salar clone ssal-eve-543-354... 122 1e-26
BT080965_1(BT080965|pid:none) Caligus clemensi clone ccle-evs-50... 120 4e-26
BC059582_1(BC059582|pid:none) Danio rerio zgc:73242, mRNA (cDNA ... 120 6e-26
EF087735_1(EF087735|pid:none) Picea sitchensis clone WS02740_E11... 120 6e-26
AY423373_1(AY423373|pid:none) Pisum sativum cultivar JI2009 euka... 119 8e-26
(Q9FK59) RecName: Full=Eukaryotic translation initiation factor ... 119 8e-26
BC097863_1(BC097863|pid:none) Xenopus laevis hypothetical protei... 119 8e-26
AF028809_1(AF028809|pid:none) Arabidopsis thaliana novel cap-bin... 119 8e-26
(O45551) RecName: Full=Eukaryotic translation initiation factor ... 119 1e-25
BC121524_1(BC121524|pid:none) Xenopus tropicalis eukaryotic tran... 119 1e-25
AK018516_1(AK018516|pid:none) Mus musculus adult male colon cDNA... 119 1e-25
BT076303_1(BT076303|pid:none) Caligus rogercresseyi clone crog-e... 118 2e-25
BT077955_1(BT077955|pid:none) Lepeophtheirus salmonis Pacific fo... 118 2e-25
EU850441_2(EU850441|pid:none) Philodina roseola dihydrogenpyrimi... 118 2e-25
BT076529_1(BT076529|pid:none) Caligus rogercresseyi clone crog-e... 117 3e-25
BT077235_1(BT077235|pid:none) Caligus rogercresseyi clone crog-e... 117 3e-25
BT078837_1(BT078837|pid:none) Esox lucius clone eluc-evq-531-245... 117 3e-25
BT075759_1(BT075759|pid:none) Caligus rogercresseyi clone crog-e... 117 3e-25
BC122831_1(BC122831|pid:none) Bos taurus eukaryotic translation ... 117 3e-25
BC028903_1(BC028903|pid:none) Mus musculus eukaryotic translatio... 117 4e-25
BC000360_1(BC000360|pid:none) Homo sapiens eukaryotic translatio... 117 4e-25
(Q21693) RecName: Full=Eukaryotic translation initiation factor ... 117 4e-25
BC158817_1(BC158817|pid:none) Rattus norvegicus eukaryotic trans... 117 4e-25
AF038957_1(AF038957|pid:none) Homo sapiens translation initiatio... 117 4e-25
DQ826509_1(DQ826509|pid:none) Sus scrofa eukaryotic translation ... 117 5e-25
BC049077_1(BC049077|pid:none) Mus musculus eukaryotic translatio... 116 7e-25
CR861258_1(CR861258|pid:none) Pongo abelii mRNA; cDNA DKFZp459H2... 115 1e-24
BT077206_1(BT077206|pid:none) Caligus rogercresseyi clone crog-e... 115 2e-24
(P56570) RecName: Full=Eukaryotic translation initiation factor ... 114 3e-24
AJ704453_1(AJ704453|pid:none) Hordeum vulgare partial eIF4E gene... 114 4e-24
AF165818_68(AF165818|pid:none) Guillardia theta nucleomorph chro... 113 6e-24
AP007162_431(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 113 7e-24
AM270206_5(AM270206|pid:none) Aspergillus niger contig An09c0170... 112 2e-23
EU850439_2(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ... 108 2e-22
AE017346_134(AE017346|pid:none) Cryptococcus neoformans var. neo... 107 3e-22
EU652317_8(EU652317|pid:none) Philodina roseola GTP binding prot... 106 9e-22
AY449462_26(AY449462|pid:none) Oikopleura dioica clone BACOIKO00... 105 1e-21
AK295083_1(AK295083|pid:none) Homo sapiens cDNA FLJ58061 complet... 104 3e-21
AY124053_1(AY124053|pid:none) Verticillium fungicola cap binding... 103 5e-21
AB079876_1(AB079876|pid:none) Marsupenaeus japonicus elF4E-1 mRN... 103 8e-21
EF502772_1(EF502772|pid:none) Arabidopsis halleri subsp. halleri... 102 1e-20
CP000582_271(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 102 1e-20
(Q22888) RecName: Full=Eukaryotic translation initiation factor ... 102 2e-20
CR954202_304(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 101 2e-20
EF502804_1(EF502804|pid:none) Arabidopsis lyrata subsp. petraea ... 101 3e-20
EF502774_1(EF502774|pid:none) Arabidopsis lyrata subsp. petraea ... 100 4e-20
AY423377_1(AY423377|pid:none) Pisum sativum cultivar JI2009 euka... 100 5e-20
AK303802_1(AK303802|pid:none) Homo sapiens cDNA FLJ59146 complet... 100 7e-20
AB264703_1(AB264703|pid:none) Papilio xuthus mRNA for eukaryotic... 99 1e-19
AB172042_1(AB172042|pid:none) Macaca fascicularis brain cDNA clo... 99 1e-19
CU640366_981(CU640366|pid:none) Podospora anserina genomic DNA c... 99 1e-19
(Q66HY7) RecName: Full=Eukaryotic translation initiation factor ... 99 2e-19
BT074436_1(BT074436|pid:none) Osmerus mordax clone omor-eva-512-... 97 4e-19
CP001574_333(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 96 9e-19
BC148114_1(BC148114|pid:none) Bos taurus eukaryotic translation ... 96 1e-18
(Q6NU27) RecName: Full=Eukaryotic translation initiation factor ... 95 2e-18
(Q28ET8) RecName: Full=Eukaryotic translation initiation factor ... 95 2e-18
(Q8N5X7) RecName: Full=Eukaryotic translation initiation factor ... 95 3e-18
BT045724_1(BT045724|pid:none) Salmo salar clone ssal-rgf-529-285... 94 4e-18
AY197742_1(AY197742|pid:none) Hydra vulgaris eIF4E-1 mRNA, parti... 94 5e-18
BC168936_1(BC168936|pid:none) Rattus norvegicus eukaryotic trans... 94 6e-18
(Q6GR08) RecName: Full=Eukaryotic translation initiation factor ... 93 8e-18
BC091985_1(BC091985|pid:none) Danio rerio zgc:110542, mRNA (cDNA... 90 7e-17
EF502805_1(EF502805|pid:none) Arabidopsis lyrata subsp. petraea ... 89 1e-16
AM502237_141(AM502237|pid:none) Leishmania infantum chromosome 19. 89 2e-16
EF589605_1(EF589605|pid:none) Capsicum annuum cultivar Dempsey e... 89 2e-16
EF589592_1(EF589592|pid:none) Capsicum annuum cultivar Jalapeno-... 89 2e-16
CP000079_166(CP000079|pid:none) Leishmania major strain Friedlin... 88 3e-16
EF589590_1(EF589590|pid:none) Capsicum annuum cultivar Jupiter e... 88 3e-16
EF502785_1(EF502785|pid:none) Arabidopsis lyrata subsp. lyrata i... 87 6e-16
EF502781_1(EF502781|pid:none) Arabidopsis lyrata subsp. petraea ... 87 6e-16
AM502245_114(AM502245|pid:none) Leishmania infantum chromosome 27. 87 6e-16
EF502775_1(EF502775|pid:none) Arabidopsis lyrata subsp. petraea ... 85 3e-15
EF502777_1(EF502777|pid:none) Arabidopsis lyrata subsp. petraea ... 85 3e-15
AM494964_175(AM494964|pid:none) Leishmania braziliensis chromoso... 84 4e-15
BC092760_1(BC092760|pid:none) Danio rerio zgc:110154, mRNA (cDNA... 79 2e-13
EU973771_1(EU973771|pid:none) Zea mays clone 410620 unknown mRNA. 77 5e-13
DQ279477_1(DQ279477|pid:none) Mus musculus oocyte-specific eukar... 77 8e-13
AC013353_40(AC013353|pid:none) Trypanosoma brucei chromosome 6 c... 72 2e-11
FN392319_126(FN392319|pid:none) Pichia pastoris GS115 chromosome... 70 9e-11
AL683874_1(AL683874|pid:none) Aspergillus fumigatus BAC AfA14E5... 69 1e-10
DQ864865_1(DQ864865|pid:none) Pfiesteria piscicida clone ppi-5p-... 67 8e-10
AP007154_298(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 66 1e-09
DQ279476_1(DQ279476|pid:none) Mus musculus oocyte-specific eukar... 65 2e-09
AL590448_91(AL590448|pid:none) chromosome VIII of strain GB-M1 o... 64 5e-09
DQ279475_1(DQ279475|pid:none) Mus musculus oocyte-specific eukar... 64 7e-09
AM494965_270(AM494965|pid:none) Leishmania braziliensis chromoso... 64 7e-09
AM494967_53(AM494967|pid:none) Leishmania braziliensis chromosom... 61 3e-08
BX538350_48(BX538350|pid:none) Cryptosporidium parvum chromosome... 60 6e-08
AM502248_78(AM502248|pid:none) Leishmania infantum chromosome 30. 58 4e-07
AF176318_3(AF176318|pid:none) Danio rerio eukaryotic translation... 52 2e-05
AF176318_1(AF176318|pid:none) Danio rerio eukaryotic translation... 52 2e-05
AK126999_1(AK126999|pid:none) Homo sapiens cDNA FLJ45054 fis, cl... 50 8e-05
AB171758_1(AB171758|pid:none) Macaca fascicularis brain cDNA clo... 49 2e-04
EF589574_1(EF589574|pid:none) Capsicum annuum cultivar Jalapeno-... 49 2e-04
EF589580_1(EF589580|pid:none) Capsicum minutiflorum cultivar 01-... 48 3e-04
EF589577_1(EF589577|pid:none) Capsicum annuum cultivar Bahamian ... 48 3e-04
EF589572_1(EF589572|pid:none) Capsicum annuum cultivar Jupiter e... 48 3e-04
EF589581_1(EF589581|pid:none) Capsicum baccatum var. praetermiss... 48 3e-04
EF589582_1(EF589582|pid:none) Capsicum chinense cultivar NMCA 30... 48 3e-04
AE017351_273(AE017351|pid:none) Cryptococcus neoformans var. neo... 48 3e-04
FM992692_392(FM992692|pid:none) Candida dubliniensis CD36 chromo... 48 4e-04
AJ704452_1(AJ704452|pid:none) Hordeum vulgare partial eIF4E gene... 48 4e-04
EF589589_1(EF589589|pid:none) Capsicum annuum cultivar Yolo Y eu... 47 9e-04
AJ851543_1(AJ851543|pid:none) Gallus gallus mRNA for hypothetica... 47 9e-04
CR382139_848(CR382139|pid:none) Debaryomyces hansenii strain CBS... 46 0.001
CP000499_391(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 45 0.002
AE017342_426(AE017342|pid:none) Cryptococcus neoformans var. neo... 44 0.004
AJ704446_1(AJ704446|pid:none) Hordeum vulgare partial eIF4E gene... 43 0.009
CT005265_25(CT005265|pid:none) Leishmania major strain Friedlin,... 41 0.036
CP001107_3172(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 37 0.52
AM420293_5926(AM420293|pid:none) Saccharopolyspora erythraea NRR... 37 0.52
CP000025_1156(CP000025|pid:none) Campylobacter jejuni RM1221, co... 37 0.52
AF264911_4(AF264911|pid:none) Campylobacter jejuni putative UDP-... 37 0.52
AX884863_1(AX884863|pid:none) Sequence 726 from Patent EP1033401. 37 0.89
AB257244_1(AB257244|pid:none) Bessa parallela mitochondrial ND5 ... 36 1.1
(P04929) Histidine-rich glycoprotein precursor. &KGZQHL(A22692)... 36 1.5
CP000302_2213(CP000302|pid:none) Shewanella denitrificans OS217,... 33 7.4
BX538352_24(BX538352|pid:none) Cryptosporidium parvum chromosome... 33 7.5

>(Q55FE0) RecName: Full=Eukaryotic translation initiation factor 4E;
Short=eIF-4E; Short=eIF4E;
Length = 250

Score = 388 bits (997), Expect = e-107
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = -1

Query: 570 LIKHPLQNRWSLWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSS 391
LIKHPLQNRWSLWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSS
Sbjct: 71 LIKHPLQNRWSLWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSS 130

Query: 390 YHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVY 211
YHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVY
Sbjct: 131 YHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVY 190

Query: 210 NSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLYEC 31
NSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLYEC
Sbjct: 191 NSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLYEC 250

Score = 110 bits (276), Expect = 4e-23
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +1

Query: 571 ISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLYEC 726
ISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLYEC
Sbjct: 199 ISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLYEC 250

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,163,237,397
Number of extensions: 22708352
Number of successful extensions: 56442
Number of sequences better than 10.0: 223
Number of HSP's gapped: 55869
Number of HSP's successfully gapped: 296
Length of query: 252
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 126
Effective length of database: 649,361,233
Effective search space: 81819515358
Effective search space used: 81819515358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.49 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
24.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U04034-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0