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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04009-1
Contig ID Contig-U04009-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04009-1 (Contig-U04009-1Q) /CSM_Contig/Contig-U04009-1Q.Seq.d
AACAACAACAACAAAAACTACAACAAGATCAACTTCATCACACTTACAAA
AGGATATACCAATCAAATTGGAAACTTCAATGGAATCATCACAAAACTCT
ACATCTACATTTAGAGAAACTCAAGAAATAATTAATAACGATACAATTAC
AGAATTGGAAAGAGACTTAAAAGGAATGAAATTTGGGGATTGCATCGATG
CAGTTACATCTGAGGTGATAGTGAAGGAGCTAATCGAAGATTATTCAACC
TCAATTATCAATAGAAATCAATTACCATCTGGAATGAATTTATTAAGAAA
ATATAGAAATTTAATAAGATCGGAATATGGTCAACCAATTGATAAGATAG
TAATTATTTTACTTTCTATGGTCACAGATGTTAGTTACATTGNATTAAAA
AGTAAATATCTTGATCTTTATAAACAAGATTGTAAAAATGGTTTGATTAA
AAGTGATATTTTAAATATAGATATGCCATATTTTGAACCTTTAAATGAAT
ATATTCAAAGACAAAAGAAATCTTTAGTTGAAATTGATGAAACAGATTTA
TATAATCCAAATACTAATATTAATCAAAA
Gap no gap
Contig length 579
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2980891
End point 2981470
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04009
List of clone(s) 

est1=SLE144F,1,580
Translated Amino Acid sequence 
TTTTKTTTRSTSSHLQKDIPIKLETSMESSQNSTSTFRETQEIINNDTITELERDLKGMK
FGDCIDAVTSEVIVKELIEDYSTSIINRNQLPSGMNLLRKYRNLIRSEYGQPIDKIVIIL
LSMVTDVSYIXLKSKYLDLYKQDCKNGLIKSDILNIDMPYFEPLNEYIQRQKKSLVEIDE
TDLYNPNTNINQ
Translated Amino Acid sequence (All Frames) 
Frame A:
nnnnknynkinfitltkgytnqignfngiitklyiyi*rnsrnn**rynyrigkrlkrne
iwglhrcsyi*gdseganrrlfnlnyq*ksitiwnefikki*kfnkigiwstn**dsnyf
tfyghrc*lhxikk*is*sl*trl*kwfd*k*yfkyryaif*tfk*iysktkeifs*n**
nrfi*sky*y*sk


Frame B:
TTTTKTTTRSTSSHLQKDIPIKLETSMESSQNSTSTFRETQEIINNDTITELERDLKGMK
FGDCIDAVTSEVIVKELIEDYSTSIINRNQLPSGMNLLRKYRNLIRSEYGQPIDKIVIIL
LSMVTDVSYIXLKSKYLDLYKQDCKNGLIKSDILNIDMPYFEPLNEYIQRQKKSLVEIDE
TDLYNPNTNINQ


Frame C:
qqqqklqqdqlhhtykriyqsnwklqwnhhktlhlhleklkk*litiqlqnwket*ke*n
lgiasmqlhlr***rs*skiiqpqlsieinyhle*iy*eniei**drnmvnqlir**lfy
flwsqmlvtlx*kvnilifinkivkmv*lkvif*i*ichilnl*mnifkdkrnl*lklmk
qiyiiqililik
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U04009-1 (Contig-U04009-1Q)
/CSM_Contig/Contig-U04009-1Q.Seq.d
         (579 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04009-1 (Contig-U04009-1Q) /CSM_Contig/Conti...  1142  0.0
Contig-U11174-1 (Contig-U11174-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U10874-1 (Contig-U10874-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U10933-1 (Contig-U10933-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U13114-1 (Contig-U13114-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13027-1 (Contig-U13027-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12952-1 (Contig-U12952-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12360-1 (Contig-U12360-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12332-1 (Contig-U12332-1Q) /CSM_Contig/Conti...    44  2e-04

>Contig-U04009-1 (Contig-U04009-1Q) /CSM_Contig/Contig-U04009-1Q.Seq.d
          Length = 579

 Score = 1142 bits (576), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaacaacaacaaaaactacaacaagatcaacttcatcacacttacaaaaggatatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaacaacaacaaaaactacaacaagatcaacttcatcacacttacaaaaggatatacc 60

                                                                       
Query: 61  aatcaaattggaaacttcaatggaatcatcacaaaactctacatctacatttagagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatcaaattggaaacttcaatggaatcatcacaaaactctacatctacatttagagaaac 120

                                                                       
Query: 121 tcaagaaataattaataacgatacaattacagaattggaaagagacttaaaaggaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaagaaataattaataacgatacaattacagaattggaaagagacttaaaaggaatgaa 180

                                                                       
Query: 181 atttggggattgcatcgatgcagttacatctgaggtgatagtgaaggagctaatcgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttggggattgcatcgatgcagttacatctgaggtgatagtgaaggagctaatcgaaga 240

                                                                       
Query: 241 ttattcaacctcaattatcaatagaaatcaattaccatctggaatgaatttattaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttattcaacctcaattatcaatagaaatcaattaccatctggaatgaatttattaagaaa 300

                                                                       
Query: 301 atatagaaatttaataagatcggaatatggtcaaccaattgataagatagtaattatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atatagaaatttaataagatcggaatatggtcaaccaattgataagatagtaattatttt 360

                                                                       
Query: 361 actttctatggtcacagatgttagttacattgnattaaaaagtaaatatcttgatcttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actttctatggtcacagatgttagttacattgnattaaaaagtaaatatcttgatcttta 420

                                                                       
Query: 421 taaacaagattgtaaaaatggtttgattaaaagtgatattttaaatatagatatgccata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaacaagattgtaaaaatggtttgattaaaagtgatattttaaatatagatatgccata 480

                                                                       
Query: 481 ttttgaacctttaaatgaatatattcaaagacaaaagaaatctttagttgaaattgatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttgaacctttaaatgaatatattcaaagacaaaagaaatctttagttgaaattgatga 540

                                                  
Query: 541 aacagatttatataatccaaatactaatattaatcaaaa 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacagatttatataatccaaatactaatattaatcaaaa 579


>Contig-U11174-1 (Contig-U11174-1Q) /CSM_Contig/Contig-U11174-1Q.Seq.d
          Length = 2587

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 2   acaacaacaacaaaaactacaacaagatcaact 34
           ||||||||||||| ||||||||||| |||||||
Sbjct: 576 acaacaacaacaacaactacaacaaaatcaact 608


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   caacaacaacaaaaactacaacaa 26
           |||||||||||| |||||||||||
Sbjct: 361 caacaacaacaacaactacaacaa 384


 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 1   aacaacaacaacaaa 15
           |||||||||||||||
Sbjct: 380 aacaacaacaacaaa 394


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 1   aacaacaacaacaa 14
           ||||||||||||||
Sbjct: 659 aacaacaacaacaa 672


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 1   aacaacaacaacaaaaactacaacaa 26
           |||||||||||||  ||| |||||||
Sbjct: 347 aacaacaacaacagcaacaacaacaa 372


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 1   aacaacaacaacaaaaactacaacaa 26
           |||||||||||| | ||| |||||||
Sbjct: 365 aacaacaacaactacaacaacaacaa 390


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 1    aacaacaacaacaa 14
            ||||||||||||||
Sbjct: 1172 aacaacaacaacaa 1185


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 1    aacaacaacaacaa 14
            ||||||||||||||
Sbjct: 1175 aacaacaacaacaa 1188


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 1   aacaacaacaacaa 14
           ||||||||||||||
Sbjct: 362 aacaacaacaacaa 375


>Contig-U10874-1 (Contig-U10874-1Q) /CSM_Contig/Contig-U10874-1Q.Seq.d
          Length = 1912

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 1   aacaacaacaacaaaaactacaacaagatcaac 33
           |||||||||||||| ||| ||||||||||||||
Sbjct: 647 aacaacaacaacaacaacaacaacaagatcaac 679


 Score = 34.2 bits (17), Expect = 0.16
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 2   acaacaacaacaaaaactacaacaa 26
           ||||||||||||| ||| |||||||
Sbjct: 645 acaacaacaacaacaacaacaacaa 669


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 1   aacaacaacaacaa 14
           ||||||||||||||
Sbjct: 677 aacaacaacaacaa 690


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,525
Number of Sequences: 6905
Number of extensions: 17525
Number of successful extensions: 6368
Number of sequences better than 10.0: 1172
length of query: 579
length of database: 5,674,871
effective HSP length: 16
effective length of query: 563
effective length of database: 5,564,391
effective search space: 3132752133
effective search space used: 3132752133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.10
Homology vs DNA 
Query= Contig-U04009-1 (Contig-U04009-1Q) /CSM_Contig/Contig-U04009-1Q.Seq.d
         (579 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061410) Dictyostelium discoideum slug cDNA, clone SLE144.     1090   0.0    1
(CP000993) Borrelia recurrentis A1, complete genome.               36   0.002  12
(CP000976) Borrelia duttonii Ly, complete genome.                  36   0.002  12
(AC084810) Homo sapiens chromosome 4 clone CTD-2518O9 map 4,...    36   0.008  6
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       40   0.026  19
(AC084449) Caenorhabditis briggsae cosmid CB021P23, complete...    38   0.029  4
(EJ771211) 1092966610108 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.045  3
(DU923486) 344854 Tomato EcoRI BAC Library Solanum lycopersi...    50   0.095  1
(AL440440) T7 end of clone BD0AA012D10 of library BD0AA from...    50   0.095  1
(AL439764) T7 end of clone BD0AA007G03 of library BD0AA from...    50   0.095  1
(AL596323) Human DNA sequence from clone RP11-83O12 on chrom...    40   0.13   3
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.16   13
(EJ919040) 1093018590685 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.22   3
(EJ178469) 1092344110891 Global-Ocean-Sampling_GS-27-01-01-1...    38   0.31   3
(AU049626) Rattus norvegicus, OTSUKA clone, 900b06, microsat...    48   0.37   1
(AC125750) Rattus norvegicus clone CH230-93L23, WORKING DRAF...    48   0.37   1
(ER554691) 1093016298810 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.37   1
(EK407208) 1095505083335 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.37   1
(CN876015) 020813AARA008608HT (AARA) Royal Gala partially se...    48   0.37   1
(GE306365) OXAZ-aaa33c03.b1 Oxytricha_pSMART_OXAZ Sterkiella...    48   0.37   1
(FP102020) Brassica rapa subsp. pekinensis clone KBrB008O03,...    32   0.73   6
(AC152225) Bos taurus clone CH240-6G9, WORKING DRAFT SEQUENC...    36   0.79   2
(AC129324) Mus musculus BAC clone RP23-253G24 from chromosom...    40   0.98   5
(AP007164) Aspergillus oryzae RIB40 genomic DNA, SC111.            46   1.5    1
(AB228826) Aspergillus oryzae cDNA, contig sequence: AoEST5700.    46   1.5    1
(EJ874117) 1093018359828 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EJ832563) 1093017586216 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EE992657) Le_emtis_210C02_M13R29 Little skate (Leucoraja er...    46   1.5    1
(FK750322) av02087c17r1.1 Symbiotic sea anemone (Anemonia vi...    46   1.5    1
(FK745011) av01018o18r1.1 Symbiotic sea anemone (Anemonia vi...    46   1.5    1
(FK732517) av01041d03r1.1 Symbiotic sea anemone (Anemonia vi...    46   1.5    1
(EY428989) ZY080585 Aspergillus oryzae EST Library Aspergill...    46   1.5    1
(AC122333) Mus musculus BAC clone RP23-346J12 from chromosom...    38   1.7    6
(AC176855) Strongylocentrotus purpuratus clone R3-3120N1, WO...    40   1.8    2
(AC170710) Atelerix albiventris clone LB4-23B2, WORKING DRAF...    40   1.9    2
(BX855612) Zebrafish DNA sequence from clone CH211-198C22 in...    40   2.6    4
(AL732507) Mouse DNA sequence from clone RP23-67E13 on chrom...    36   2.6    6
(CT885691) Phaeodactylum tricornutum 5-PRIME EST from clone ...    30   2.9    3
(AC167114) Dasypus novemcinctus clone VMRC5-428G17, WORKING ...    32   2.9    2
(BX640501) Zebrafish DNA sequence from clone CH211-117O11 in...    34   3.0    2
(FH668124) CHO_OF5021xb21r1.ab1 CHO_OF5 Nicotiana tabacum ge...    32   3.0    3
(AC140185) Mus musculus BAC clone RP24-363A3 from chromosome...    38   3.2    5
(X95276) Plasmodium falciparum complete gene map of plastid-...    32   3.6    5
(CU153170) Equus caballus GSS, BAC clone CH241-292F13, T7 en...    30   3.7    3
(AC016687) Homo sapiens BAC clone RP11-79E3 from 4, complete...    36   3.8    6
(CE284670) tigr-gss-dog-17000333791273 Dog Library Canis lup...    34   3.9    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   3.9    12
(BX180011) Danio rerio genomic clone DKEY-175G9, genomic sur...    34   4.0    2
(CU655872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.0    5
(AY335875) Rhincalanus cornutus 16S ribosomal RNA gene, part...    34   4.0    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   4.0    9
(AC098984) Rattus norvegicus clone CH230-47I23, *** SEQUENCI...    40   4.1    6
(AC097314) Homo sapiens X BAC RP11-155F12 (Roswell Park Canc...    38   4.5    3
(AC106845) Homo sapiens chromosome 8, clone RP11-183J19, com...    36   4.7    4
(FP236348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.7    6
(DR370549) 146651 CERES-147 Arabidopsis thaliana cDNA clone ...    30   5.0    3
(AP001028) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    38   5.0    4
(AC133073) Lemur catta clone LB2-65K9, WORKING DRAFT SEQUENC...    40   5.2    3
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   5.6    8
(AC176974) Strongylocentrotus purpuratus clone R3-1103D16, W...    38   5.7    5
(CT573447) Zebrafish DNA sequence from clone CH73-71E24 in l...    44   5.8    1
(AC145930) Gallus gallus BAC clone CH261-31O19 from chromoso...    44   5.8    1
(EU526394) Protohermes concolorus mitochondrion, complete ge...    44   5.8    1
(AC129347) Rattus norvegicus clone CH230-509O5, WORKING DRAF...    44   5.8    1
(AC106450) Rattus norvegicus clone CH230-200B13, WORKING DRA...    44   5.8    1
(CT573254) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   5.8    1
(AC233629) Solanum tuberosum strain Diploid genotype RH89-03...    44   5.8    1
(AC233606) Solanum tuberosum strain Diploid genotype RH89-03...    44   5.8    1
(AC180461) Strongylocentrotus purpuratus clone R3-3102D19, W...    44   5.8    1
(AC178396) Strongylocentrotus purpuratus clone R3-3110L19, W...    44   5.8    1
(AC172488) Strongylocentrotus purpuratus clone R3-14F15, WOR...    44   5.8    1
(FH681767) CHO_OF5064xg21f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   5.8    1
(FH355626) CHO_OF4673xh17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.8    1
(FH355539) CHO_OF4673xh17f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.8    1
(FH338796) CHO_OF4603xg11r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.8    1
(FH123273) CHO_OF3303xa13f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.8    1
(DX550973) GH_MBb0040K24r GH_MBb Gossypium hirsutum genomic ...    44   5.8    1
(DE010533) Branchiostoma floridae DNA, clone: CH302-018K05.F...    44   5.8    1
(CE754403) tigr-gss-dog-17000369645375 Dog Library Canis lup...    44   5.8    1
(CE127465) tigr-gss-dog-17000326061696 Dog Library Canis lup...    44   5.8    1
(BZ219440) CH230-360N6.TV CHORI-230 Segment 2 Rattus norvegi...    44   5.8    1
(BX131167) Danio rerio genomic clone DKEY-88P20, genomic sur...    44   5.8    1
(DY983617) CLSS6232.b1_O21.ab1 CLS(LMS) lettuce sativa Lactu...    44   5.8    1
(DC216023) Plasmodium berghei strain ANKA cDNA clone:MG01847...    44   5.8    1
(CX582529) TTE00020442 Amplicon Express - Conjugative Form T...    44   5.8    1
(FF571094) TTEBG40THC Tetrahymena thermophila conjugation cD...    44   5.8    1
(EY535962) CAPF9725.fwd CAPF Capitella sp. I ECS-2004 whole ...    44   5.8    1
(EY535961) CAPF9725.rev CAPF Capitella sp. I ECS-2004 whole ...    44   5.8    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    44   5.8    1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    44   5.8    1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    44   5.8    1
(CP000521) Acinetobacter baumannii ATCC 17978, complete genome.    44   5.8    1
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    44   5.8    1
(AE002133) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    44   5.8    1
(AC204171) Equus caballus clone CH241-228C5, WORKING DRAFT S...    38   6.4    5
(AC162910) Mus musculus BAC clone RP24-322O3 from chromosome...    36   6.5    7
(AC022204) Homo sapiens chromosome 8 clone RP11-535F5, WORKI...    32   7.0    7
(AC224653) Bos taurus clone CH240-479H12, WORKING DRAFT SEQU...    42   7.1    2
(CU029580) Equus caballus GSS, BAC clone CH241-126N15, SP6 e...    30   7.1    3
(EJ981141) 1093022155264 Global-Ocean-Sampling_GS-30-02-01-1...    38   7.3    2
(CW364946) fsbb001f037d16f0 Sorghum methylation filtered lib...    34   7.7    3
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    34   7.8    9
(AY087274) Arabidopsis thaliana clone 3350 mRNA, complete se...    30   7.9    3
(AC163992) Mus musculus chromosome 1, clone RP23-193H10, com...    34   8.1    6
(AC104831) Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cance...    38   8.1    3
(ER352652) 1092347041878 Global-Ocean-Sampling_GS-34-01-01-1...    30   8.2    3
(BX821174) Arabidopsis thaliana Full-length cDNA Complete se...    30   8.3    3
(AC159127) Mus musculus chromosome 3, clone RP24-214E8, comp...    36   8.5    7
(CR354392) Zebrafish DNA sequence from clone CH211-91P5 in l...    40   8.7    5
(EL914599) INIT2_79_F08.g2_A006 G5 trophont cDNA (INIT2) Ich...    40   8.7    2
(CW364947) fsbb001f037d16k0 Sorghum methylation filtered lib...    34   8.9    3
(AC140992) Rattus norvegicus clone CH230-455F2, *** SEQUENCI...    42   9.1    2
(EL403730) CFFS1661.b1_J07.ab1 CFF(LMS) safflower Carthamus ...    30   9.3    3
(AC134049) Medicago truncatula clone mth2-21j3, complete seq...    42   9.3    3
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    32   9.6    8
(AL929231) Zebrafish DNA sequence from clone BUSM1-46P4 Cont...    40   9.6    4

>(AU061410) Dictyostelium discoideum slug cDNA, clone SLE144.
          Length = 580

 Score = 1090 bits (550), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Plus


Query: 27  gatcaacttcatcacacttacaaaaggatataccaatcaaattggaaacttcaatggaat 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27  gatcaacttcatcacacttacaaaaggatataccaatcaaattggaaacttcaatggaat 86


Query: 87  catcacaaaactctacatctacatttagagaaactcaagaaataattaataacgatacaa 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  catcacaaaactctacatctacatttagagaaactcaagaaataattaataacgatacaa 146


Query: 147 ttacagaattggaaagagacttaaaaggaatgaaatttggggattgcatcgatgcagtta 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ttacagaattggaaagagacttaaaaggaatgaaatttggggattgcatcgatgcagtta 206


Query: 207 catctgaggtgatagtgaaggagctaatcgaagattattcaacctcaattatcaatagaa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 catctgaggtgatagtgaaggagctaatcgaagattattcaacctcaattatcaatagaa 266


Query: 267 atcaattaccatctggaatgaatttattaagaaaatatagaaatttaataagatcggaat 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atcaattaccatctggaatgaatttattaagaaaatatagaaatttaataagatcggaat 326


Query: 327 atggtcaaccaattgataagatagtaattattttactttctatggtcacagatgttagtt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggtcaaccaattgataagatagtaattattttactttctatggtcacagatgttagtt 386


Query: 387 acattgnattaaaaagtaaatatcttgatctttataaacaagattgtaaaaatggtttga 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acattgnattaaaaagtaaatatcttgatctttataaacaagattgtaaaaatggtttga 446


Query: 447 ttaaaagtgatattttaaatatagatatgccatattttgaacctttaaatgaatatattc 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttaaaagtgatattttaaatatagatatgccatattttgaacctttaaatgaatatattc 506


Query: 507 aaagacaaaagaaatctttagttgaaattgatgaaacagatttatataatccaaatacta 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaagacaaaagaaatctttagttgaaattgatgaaacagatttatataatccaaatacta 566


Query: 567 atattaatcaaaa 579
           |||||||||||||
Sbjct: 567 atattaatcaaaa 579

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 789,599,297
Number of extensions: 50284088
Number of successful extensions: 4560567
Number of sequences better than 10.0: 116
Length of query: 579
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 556
Effective length of database: 99,442,330,388
Effective search space: 55289935695728
Effective search space used: 55289935695728
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U04009-1 (Contig-U04009-1Q) /CSM_Contig/Contig-U04009-1Q.Seq.d
         (579 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LA8) RecName: Full=Probable cytochrome P450 555A1;          ...    37   0.50
CP001071_16(CP001071|pid:none) Akkermansia muciniphila ATCC BAA-...    36   0.66
BA000016_1875(BA000016|pid:none) Clostridium perfringens str. 13...    36   0.86
(Q6CQR6) RecName: Full=Multiple RNA-binding domain-containing pr...    34   2.5
CP001403_1592(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...    34   2.5
AL031745_98(AL031745|pid:none) Plasmodium falciparum DNA from MA...    34   2.5
(Q87LM9) RecName: Full=UPF0350 protein VP2582;  &BA000031_2582(B...    34   3.3
CP000789_3420(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    34   3.3
CP000885_2309(CP000885|pid:none) Clostridium phytofermentans ISD...    34   3.3
AC149266_1(AC149266|pid:none) Solanum demissum chromosome 5 clon...    33   4.2
CP001111_3520(CP001111|pid:none) Stenotrophomonas maltophilia R5...    33   4.2
AE017344_579(AE017344|pid:none) Cryptococcus neoformans var. neo...    33   5.5
CP000821_2073(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...    33   5.5
AY750155_3(AY750155|pid:none) Banana streak virus strain Acumina...    33   7.2
AP008214_39(AP008214|pid:none) Oryza sativa (japonica cultivar-g...    33   7.2
AP003909_18(AP003909|pid:none) Oryza sativa Japonica Group genom...    33   7.2
FM954972_2493(FM954972|pid:none) Vibrio splendidus LGP32 chromos...    33   7.2
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    32   9.5
AF542528_28(AF542528|pid:none) Cryptococcus neoformans var. grub...    32   9.5
AF542530_14(AF542530|pid:none) Cryptococcus neoformans var. neof...    32   9.5

>(Q54LA8) RecName: Full=Probable cytochrome P450 555A1;
           EC=1.14.-.-;
          Length = 484

 Score = 36.6 bits (83), Expect = 0.50
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 18/187 (9%)
 Frame = +2

Query: 71  ETSMESSQNSTSTFRETQEIINND----------TITELERDLKGMKFGDCIDAVTSEVI 220
           E  +E     T  F+ ++ I+N++          +I EL  ++K  K+   I   T++
Sbjct: 89  EVFIERYNKITKKFKSSENIVNSNGLIWKKLQSISIQELSPNIKIKKYEPMIINETNK-- 146

Query: 221 VKELIEDYSTSIINRNQLPSGMNLLRKYRNLIRS-----EYGQPIDKIVIILLSMVTDVS 385
              LI+ ++  I +   +   +N+   + N+I S      Y    D+ VI L+  +  +
Sbjct: 147 ---LIDSFNEHIKSNESIDPTLNIKICFLNIIISFLFNFRYNDYKDEKVIQLVDYIHSIF 203

Query: 386 YIX---LKSKYLDLYKQDCKNGLIKSDILNIDMPYFEPLNEYIQRQKKSLVEIDETDLYN 556
            +    +   Y+ +  +   N   K     I    FE + EYI+ Q +  +EI   +  N
Sbjct: 204 RMGSHPIPQDYIPILNKFYINKTTK-----IHQKIFENIYEYIENQVQKRLEILNKNNNN 258

Query: 557 PNTNINQ 577
            N NIN+
Sbjct: 259 NNNNINE 265

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 775,821,622
Number of extensions: 13460811
Number of successful extensions: 28792
Number of sequences better than 10.0: 20
Number of HSP's gapped: 28775
Number of HSP's successfully gapped: 20
Length of query: 193
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 71
Effective length of database: 662,435,025
Effective search space: 47032886775
Effective search space used: 47032886775
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.65  gvh: 0.25  alm: 0.27  top: 0.47  tms: 0.07  mit: 0.45  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04009-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0