| Contig-U00879-1 |
| Contig ID |
Contig-U00879-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
723 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
1174303 |
| End point |
1174944 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U00879 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.21 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 4.19 |
| Homology vs DNA |
Query= Contig-U00879-1 (Contig-U00879-1Q) /CSM_Contig/Contig-U00879-1Q.Seq.d
(723 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ398748) Dictyostelium discoideum cDNA clone:dds2c01, 3' e... 807 0.0 2
(AU071552) Dictyostelium discoideum slug cDNA, clone SSB779. 476 e-130 1
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 32 0.058 14
(AC195116) Populus trichocarpa clone Pop1-63A24, complete se... 50 0.12 1
(AC169953) Bos taurus clone CH240-220G4, WORKING DRAFT SEQUE... 50 0.12 1
(AC161162) Bos taurus clone CH240-53O23, WORKING DRAFT SEQUE... 48 0.38 4
(BD061520) Genome DNA of symbiotic bacteria of aphid. 32 0.40 14
(AR409405) Sequence 1 from patent US 6632935. 32 0.40 14
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 32 0.40 14
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 32 0.41 14
(ET300977) S0015D22_T7 CHORI-214 Salmo salar genomic clone S... 36 0.44 3
(AF141214) Rhabdomys pumilio country South Africa cytochrome... 48 0.47 1
(AC163373) Bos taurus clone CH240-115B4, WORKING DRAFT SEQUE... 48 0.47 1
(AZ539207) ENTCV36TR Entamoeba histolytica Sheared DNA Entam... 48 0.47 1
(AC026757) Arabidopsis thaliana chromosome 1 BAC F2H10 genom... 42 0.47 2
(AC196755) Citrus sinensis clone CSRBBa-035B19, WORKING DRAF... 46 0.56 3
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 34 0.69 2
(CU855738) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.87 4
(AC161856) Bos taurus clone CH240-95K16, WORKING DRAFT SEQUE... 44 1.0 2
(AP004136) Oryza sativa Japonica Group genomic DNA, chromoso... 34 1.0 2
(EA690669) Sequence 69548 from patent US 7365185. 34 1.1 2
(Z84476) Human DNA sequence from clone RP1-25J6 on chromosom... 40 1.2 3
(AC149546) Medicago truncatula chromosome 8 clone mth2-70o13... 36 1.3 6
(GC556985) Sequence 696 from patent US 7416862. 38 1.6 2
(EA073380) Sequence 738 from patent US 7183083. 38 1.6 2
(AR887077) Sequence 738 from patent US 7060458. 38 1.6 2
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 34 1.7 18
(AC215436) Solanum lycopersicum chromosome 2 clone C02HBa030... 42 1.8 7
(BX928750) Zebrafish DNA sequence from clone DKEY-162P13 in ... 46 1.9 1
(BX004829) Zebrafish DNA sequence from clone DKEY-29O15. 46 1.9 1
(AC209105) Populus trichocarpa clone POP086-P02, complete se... 46 1.9 1
(AC013473) Homo sapiens BAC clone RP11-504G5 from 2, complet... 46 1.9 1
(AC151554) Dasypus novemcinctus clone VMRC5-256K8, WORKING D... 46 1.9 1
(AL844506) Plasmodium falciparum chromosome 7. 46 1.9 1
(AC220798) Bos taurus clone CH240-346G12, WORKING DRAFT SEQU... 46 1.9 1
(CB894228) EST647020 HOGA Medicago truncatula cDNA clone HOG... 46 1.9 1
(BP874523) Apis mellifera mRNA, clone: p36A12_A12_02.ab1. 46 1.9 1
(BP874522) Apis mellifera mRNA, clone: p36A11_A11_01.ab1. 46 1.9 1
(BP874521) Apis mellifera mRNA, clone: p36A10_A10_02.ab1. 46 1.9 1
(BP874520) Apis mellifera mRNA, clone: p36A09_A08_02.ab1. 46 1.9 1
(BP874519) Apis mellifera mRNA, clone: p36A08_A09_01.ab1. 46 1.9 1
(BP874518) Apis mellifera mRNA, clone: p36A07_A07_01.ab1. 46 1.9 1
(AP010656) Candidatus Azobacteroides pseudotrichonymphae gen... 46 1.9 1
(AL662865) Human DNA sequence from clone XXbac-216M5 on chro... 40 1.9 4
(AC018680) Homo sapiens BAC clone RP11-384E2 from 4, complet... 38 1.9 6
(AC094392) Rattus norvegicus clone CH230-3L13, *** SEQUENCIN... 40 2.1 5
(DR952616) EST1144155 Aquilegia cDNA library Aquilegia formo... 36 3.3 2
(AC011901) Homo sapiens BAC clone RP11-547P13 from 2, comple... 34 3.6 2
(AC011827) Homo sapiens chromosome 15 clone RP11-57H1 map 15... 32 3.6 2
(AC068866) Homo sapiens chromosome 15 clone RP11-448N8 map 1... 32 3.6 2
(AC138859) Homo sapiens chromosome 5 clone RP11-1370D6, WORK... 34 3.6 2
(AC021095) Homo sapiens chromosome 15 clone RP11-408F10, WOR... 32 3.6 2
(AC090763) Homo sapiens chromosome 15, clone RP11-408F10, co... 32 3.6 2
(AC009224) Homo sapiens BAC clone RP11-92G23 from 2, complet... 34 3.6 2
(EK269055) 1095462247615 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.7 2
(AC205254) Zea mays chromosome 4 clone CH201-289B1; ZMMBBc02... 44 4.1 4
(AE017308) Mycoplasma mobile 163K complete genome. 30 4.2 17
(DT730609) EST1164459 Aquilegia cDNA library Aquilegia formo... 36 4.4 2
(DQ296671) Aristolochia elongata trnK gene, partial sequence... 34 4.5 2
(AX145082) Sequence 3804 from Patent WO0134809. 38 4.5 2
(AR485718) Sequence 3804 from patent US 6703492. 38 4.5 2
(AF269764) Staphylococcus epidermidis strain SR1 clone step.... 38 4.5 2
(AC156422) Bos taurus clone CH240-54F4, WORKING DRAFT SEQUEN... 38 6.2 2
(CR925897) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 6.3 9
(Z75541) Caenorhabditis elegans Cosmid F52B5. 42 6.4 3
(AC232552) Brassica rapa subsp. pekinensis clone KBrH013B13,... 34 6.9 6
(BX908725) Zebrafish DNA sequence from clone CH211-168K8 in ... 44 7.3 1
(CU406989) Mouse DNA sequence from clone CH29-63I6 on chromo... 44 7.3 1
(AL669902) Mouse DNA sequence from clone RP23-459P8 on chrom... 44 7.3 1
(AL596130) Mouse DNA sequence from clone RP23-209O5 on chrom... 44 7.3 1
(AC116773) Mus musculus chromosome 1, clone RP23-430H21, com... 44 7.3 1
(DQ898156) Daucus carota chloroplast, complete genome. 44 7.3 1
(AC063973) Genomic Sequence For Arabidopsis thaliana Clone T... 44 7.3 1
(AB046436) Arabidopsis thaliana DNA, chromosome 5 centromere... 44 7.3 1
(AB232960) Ceutorhynchus ibukianus mitochondrial gene for 12... 44 7.3 1
(AL442643) Human DNA sequence from clone RP11-564H19 on chro... 44 7.3 1
(AC130965) Rattus norvegicus clone CH230-9M22, *** SEQUENCIN... 44 7.3 1
(AC123101) Rattus norvegicus clone CH230-32O20, *** SEQUENCI... 44 7.3 1
(AC053537) Homo sapiens chromosome 13 clone RP11-753O16, WOR... 44 7.3 1
(AC026380) Mus musculus chromosome 11 clone RP23-333B13, ***... 44 7.3 1
(AC233600) Monodelphis domestica clone VMRC18-217J3, WORKING... 44 7.3 1
(AC226302) Monodelphis domestica clone VMRC18-549F22, WORKIN... 44 7.3 1
(AC220445) Bos taurus clone CH240-358H23, WORKING DRAFT SEQU... 44 7.3 1
(AC171388) Squalus acanthias clone SA_Bc-101N18, WORKING DRA... 44 7.3 1
(AC169159) Squalus acanthias clone SA_Bc-133E21, WORKING DRA... 44 7.3 1
(AZ106726) RPCI-23-456E19.TV RPCI-23 Mus musculus genomic cl... 44 7.3 1
(AZ060252) RPCI-23-405E7.TV RPCI-23 Mus musculus genomic clo... 44 7.3 1
(FH965445) CHO_OF6783xm06r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 7.3 1
(FH072521) CHO_OF3675xh17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 7.3 1
(ET847099) CHO_OF390xp21r1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.3 1
(ET370152) S0184K08_T7 CHORI-214 Salmo salar genomic clone S... 44 7.3 1
(ER632101) 1093018499296 Global-Ocean-Sampling_GS-36-01-01-2... 44 7.3 1
(EK319839) 1095462425535 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.3 1
(EK159274) 1095458019489 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.3 1
(EJ466298) 1095403249681 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.3 1
(DE361862) Bombyx mori genomic DNA, BAC clone:BET_602_L05. 44 7.3 1
(CU290953) Equus caballus GSS, BAC clone CH241-455M7, T7 end... 44 7.3 1
(CG068685) PUKBY15TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.3 1
(CG068684) PUKBY15TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.3 1
(EE678188) KAAN-aaa08c12.g2 Platypus_EST_Cell_line_1.0-4.0kb... 44 7.3 1
(AC212862) Pongo abelii chromosome 8 clone CH276-293L7, WORK... 40 7.5 6
(AY149028) Plasmodium chabaudi chabaudi strain AS clone YAC1... 32 7.6 5
(CR759862) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 7.6 7
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 34 7.8 12
(AC093119) Homo sapiens chromosome 1 clone RP5-916A15, compl... 38 8.0 2
(DB736223) Apis mellifera head cDNA, RIKEN full-length enric... 34 8.0 2
(AG311063) Mus musculus molossinus DNA, clone:MSMg01-093L02.... 38 8.8 2
(DE439287) Bombyx mori genomic DNA, Fosmid clone:GBMFno27_e2... 40 9.0 2
(AC004954) Homo sapiens PAC clone RP5-1064B22 from 7, comple... 40 9.3 3
(BH571607) BOHGX17TF BOHG Brassica oleracea genomic clone BO... 34 9.9 2
>(BJ398748) Dictyostelium discoideum cDNA clone:dds2c01, 3' end,
single read.
Length = 571
Score = 807 bits (407), Expect(2) = 0.0
Identities = 407/407 (100%)
Strand = Plus / Minus
Query: 178 tttcaaaaatattccaagtttatctgaatttgattctgaactcttaacggattattactc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tttcaaaaatattccaagtttatctgaatttgattctgaactcttaacggattattactc 488
Query: 238 aatgatttcagaaccaatgtccataaattcaatactctcttcagtaatttatacagcaga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aatgatttcagaaccaatgtccataaattcaatactctcttcagtaatttatacagcaga 428
Query: 298 ttataacatcgataattgtttagatgattttaatcaagtcttggagaattcaatgaccta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttataacatcgataattgtttagatgattttaatcaagtcttggagaattcaatgaccta 368
Query: 358 caattctgaaaattctatcatctattggttagctcattattgtaaaatagaattatataa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caattctgaaaattctatcatctattggttagctcattattgtaaaatagaattatataa 308
Query: 418 agcactctccaattcaggtataattcaaaataaattatatttagatattaaaaaagattc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcactctccaattcaggtataattcaaaataaattatatttagatattaaaaaagattc 248
Query: 478 tgaaactttccttaaatcaattggtactcaattaaaaggtgatggtatttctttgcctca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgaaactttccttaaatcaattggtactcaattaaaaggtgatggtatttctttgcctca 188
Query: 538 aataattgctcaatctgtttcaaaaaataaagaacaaactgtaccac 584
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aataattgctcaatctgtttcaaaaaataaagaacaaactgtaccac 141
Score = 48.1 bits (24), Expect(2) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 153 gtgattcaagaccaatttcaagtt 176
||||||||||||||||||||||||
Sbjct: 571 gtgattcaagaccaatttcaagtt 548
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 875,029,272
Number of extensions: 54713629
Number of successful extensions: 4902710
Number of sequences better than 10.0: 111
Length of query: 723
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 699
Effective length of database: 99,340,224,878
Effective search space: 69438817189722
Effective search space used: 69438817189722
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.14 |
| Homology vs Protein |
Query= Contig-U00879-1 (Contig-U00879-1Q) /CSM_Contig/Contig-U00879-1Q.Seq.d
(723 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070273_1(BC070273|pid:none) Homo sapiens cDNA clone IMAGE:6714... 54 6e-06
BC129934_1(BC129934|pid:none) Homo sapiens polybromo 1, mRNA (cD... 54 6e-06
AF197569_1(AF197569|pid:none) Homo sapiens BAF180 (BAF180) mRNA,... 54 6e-06
BC129935_1(BC129935|pid:none) Homo sapiens polybromo 1, mRNA (cD... 54 6e-06
BC172609_1(BC172609|pid:none) Synthetic construct Mus musculus c... 54 6e-06
AK056541_1(AK056541|pid:none) Homo sapiens cDNA FLJ31979 fis, cl... 54 6e-06
AX280376_1(AX280376|pid:none) Sequence 1 from Patent WO0177147. 54 6e-06
AF225871_1(AF225871|pid:none) Homo sapiens polybromo-1 (PB1) mRN... 54 6e-06
AF225870_1(AF225870|pid:none) Homo sapiens polybromo-1 (PB1) mRN... 54 6e-06
BC029037_1(BC029037|pid:none) Mus musculus polybromo 1, mRNA (cD... 54 6e-06
BC115011_1(BC115011|pid:none) Homo sapiens polybromo 1, mRNA (cD... 53 8e-06
FM992690_238(FM992690|pid:none) Candida dubliniensis CD36 chromo... 52 2e-05
(Q90941) RecName: Full=Protein polybromo-1; &JC5056(JC5056;S606... 52 2e-05
BC084946_1(BC084946|pid:none) Xenopus laevis hypothetical LOC495... 49 1e-04
CR380953_373(CR380953|pid:none) Candida glabrata strain CBS138 c... 48 3e-04
AF230280_1(AF230280|pid:none) Caenorhabditis elegans SWI2/SNF2-l... 47 6e-04
A42091(A42091) transcription activator SNF2/SWI2 homolog brm - f... 45 0.002
AE014296_2753(AE014296|pid:none) Drosophila melanogaster chromos... 45 0.002
(P22082) RecName: Full=Transcription regulatory protein SNF2; ... 45 0.002
AE016818_715(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 44 0.004
(P32597) RecName: Full=Nuclear protein STH1/NPS1; EC=3.... 44 0.004
CP000502_77(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 44 0.004
(Q09948) RecName: Full=Chromatin structure-remodeling complex su... 44 0.007
(O94421) RecName: Full=SWI/SNF chromatin-remodeling complex subu... 43 0.009
(O74964) RecName: Full=Chromatin structure-remodeling complex su... 43 0.009
AL034491_14(AL034491|pid:none) S.pombe chromosome III cosmid c16... 43 0.009
CP000498_251(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 43 0.011
CR382139_133(CR382139|pid:none) Debaryomyces hansenii strain CBS... 43 0.011
AC006661_7(AC006661|pid:none) Caenorhabditis elegans fosmid H20J... 42 0.015
(Q6BER5) RecName: Full=Nucleosome-remodeling factor subunit NURF... 42 0.019
Z81515_11(Z81515|pid:none) Caenorhabditis elegans Cosmid F26H11,... 42 0.019
T21435(T21435)hypothetical protein F26H11.3c - Caenorhabditis el... 42 0.019
Z81515_7(Z81515|pid:none) Caenorhabditis elegans Cosmid F26H11, ... 42 0.019
BC078299_1(BC078299|pid:none) Danio rerio polybromo 1, like, mRN... 41 0.033
(P53236) RecName: Full=Chromatin structure-remodeling complex su... 41 0.033
T19481(T19481;T25434)hypothetical protein C26C6.1 - Caenorhabdit... 40 0.056
AL606837_9(AL606837|pid:none) Brugia malayi genomic DNA MIF-1 l... 40 0.056
DQ115391_15(DQ115391|pid:none) Saccharomyces cerevisiae Ygr039wp... 40 0.056
BC062700_1(BC062700|pid:none) Homo sapiens bromodomain, testis-s... 40 0.073
BC023452_1(BC023452|pid:none) Mus musculus polybromo 1, mRNA (cD... 40 0.073
CR940348_635(CR940348|pid:none) Theileria annulata strain Ankara... 40 0.073
FN357554_17(FN357554|pid:none) Schistosoma mansoni genome sequen... 40 0.073
CT573071_1143(CT573071|pid:none) Kuenenia stuttgartiensis genome... 40 0.073
CU928174_334(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 40 0.095
AY205256_1(AY205256|pid:none) Danio rerio brahma protein-like pr... 40 0.095
CR954207_51(CR954207|pid:none) Ostreococcus tauri strain OTTH059... 40 0.095
CR382131_1336(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 39 0.12
AB463450_1(AB463450|pid:none) Synthetic construct DNA, clone: pF... 39 0.21
BC017582_1(BC017582|pid:none) Homo sapiens bromodomain, testis-s... 39 0.21
AK067716_1(AK067716|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.21
BT084012_1(BT084012|pid:none) Zea mays full-length cDNA clone ZM... 39 0.21
AK303008_1(AK303008|pid:none) Homo sapiens cDNA FLJ55453 complet... 39 0.21
AC012394_12(AC012394|pid:none) Arabidopsis thaliana chromosome 1... 39 0.21
AE017341_630(AE017341|pid:none) Cryptococcus neoformans var. neo... 39 0.21
AY338951_1(AY338951|pid:none) Homo sapiens testis-specific BRDT ... 39 0.21
(Q58F21) RecName: Full=Bromodomain testis-specific protein; AltN... 39 0.21
FN357309_22(FN357309|pid:none) Schistosoma mansoni genome sequen... 39 0.21
AK147545_1(AK147545|pid:none) Mus musculus 14 days pregnant adul... 38 0.28
(O60885) RecName: Full=Bromodomain-containing protein 4; AltName... 38 0.28
BC138834_1(BC138834|pid:none) Mus musculus bromodomain containin... 38 0.28
BC030158_1(BC030158|pid:none) Homo sapiens bromodomain containin... 38 0.28
BC091649_1(BC091649|pid:none) Homo sapiens bromodomain containin... 38 0.28
CT033751_3(CT033751|pid:none) Mouse DNA sequence from clone RP24... 38 0.28
BC123310_1(BC123310|pid:none) Xenopus laevis hypothetical protei... 38 0.28
AC004798_1(AC004798|pid:none) Homo sapiens chromosome 19, cosmid... 38 0.28
CT033751_2(CT033751|pid:none) Mouse DNA sequence from clone RP24... 38 0.28
BC100641_1(BC100641|pid:none) Rattus norvegicus bromodomain cont... 38 0.28
AK154514_1(AK154514|pid:none) Mus musculus NOD-derived CD11c +ve... 38 0.28
CR380948_118(CR380948|pid:none) Candida glabrata strain CBS138 c... 38 0.28
CT033751_1(CT033751|pid:none) Mouse DNA sequence from clone RP24... 38 0.28
BC082782_1(BC082782|pid:none) Mus musculus bromodomain containin... 38 0.28
BT041671_1(BT041671|pid:none) Zea mays full-length cDNA clone ZM... 38 0.28
BC035266_1(BC035266|pid:none) Homo sapiens bromodomain containin... 38 0.28
(Q06488) RecName: Full=Chromatin structure-remodeling complex su... 38 0.28
CR380957_186(CR380957|pid:none) Candida glabrata strain CBS138 c... 38 0.36
(Q60544) RecName: Full=Transcription initiation factor TFIID sub... 38 0.36
AB208640_1(AB208640|pid:none) Mus musculus Brdt mRNA for bromodo... 38 0.36
AC004238_13(AC004238|pid:none) Arabidopsis thaliana chromosome 2... 38 0.36
AE013599_3027(AE013599|pid:none) Drosophila melanogaster chromos... 38 0.36
(Q91Y44) RecName: Full=Bromodomain testis-specific protein; AltN... 38 0.36
AY256967_1(AY256967|pid:none) Xenopus laevis nuclear transcripto... 38 0.36
EU236153_1(EU236153|pid:none) Xenopus laevis bromodomain 4 (BRD4... 37 0.47
AJ549249_1(AJ549249|pid:none) Homo sapiens partial mRNA for puta... 37 0.47
BC055543_1(BC055543|pid:none) Danio rerio bromodomain containing... 37 0.47
AJ555148_1(AJ555148|pid:none) Homo sapiens partial mRNA for puta... 37 0.47
CR382130_834(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 37 0.47
BC156425_1(BC156425|pid:none) Synthetic construct Mus musculus c... 37 0.47
BC116182_1(BC116182|pid:none) Homo sapiens TAF1-like RNA polymer... 37 0.47
AY089422_1(AY089422|pid:none) Drosophila melanogaster AT24535 fu... 37 0.47
AE014297_3538(AE014297|pid:none) Drosophila melanogaster chromos... 37 0.47
AC098693_18(AC098693|pid:none) Oryza sativa (japonica cultivar-g... 37 0.47
(Q8IZX4) RecName: Full=Transcription initiation factor TFIID 210... 37 0.47
AB209316_1(AB209316|pid:none) Homo sapiens mRNA for TBP-associat... 37 0.47
AK046668_1(AK046668|pid:none) Mus musculus 4 days neonate male a... 37 0.47
(Q8BQQ7) RecName: Full=Transcription initiation factor TFIID sub... 37 0.47
BC095027_1(BC095027|pid:none) Danio rerio bromodomain containing... 37 0.47
BC047418_1(BC047418|pid:none) Mus musculus TAF1 RNA polymerase I... 37 0.47
A40262(A40262;S03005;S00830;S32352;S32353) transcription initiat... 37 0.47
AB300418_1(AB300418|pid:none) Homo sapiens N-TAF1 mRNA for TAF1 ... 37 0.47
AP008209_215(AP008209|pid:none) Oryza sativa (japonica cultivar-... 37 0.47
AJ549248_1(AJ549248|pid:none) Homo sapiens partial mRNA for puta... 37 0.47
FN392321_1161(FN392321|pid:none) Pichia pastoris GS115 chromosom... 37 0.47
BC076786_1(BC076786|pid:none) Xenopus laevis bromodomain contain... 37 0.47
EU236152_1(EU236152|pid:none) Danio rerio bromodomain 4 (brd4) m... 37 0.47
BC094568_1(BC094568|pid:none) Mus musculus TAF1 RNA polymerase I... 37 0.47
EU430758_1(EU430758|pid:none) Homo sapiens SMARCA4 isoform 4 mRN... 37 0.62
EU430756_1(EU430756|pid:none) Homo sapiens SMARCA4 isoform 3 mRN... 37 0.62
AL672176_4(AL672176|pid:none) Zebrafish DNA sequence from clone ... 37 0.62
BC163902_1(BC163902|pid:none) Danio rerio bromodomain-containing... 37 0.62
AE016819_795(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 37 0.62
AJ504723_1(AJ504723|pid:none) Rattus norvegicus partial mRNA for... 37 0.62
AK166837_1(AK166837|pid:none) Mus musculus blastocyst blastocyst... 37 0.62
A86198(A86198) hypothetical protein [imported] - Arabidopsis tha... 37 0.80
BC121942_1(BC121942|pid:none) Xenopus tropicalis bromodomain con... 37 0.80
AL031745_67(AL031745|pid:none) Plasmodium falciparum DNA from MA... 37 0.80
BT004888_1(BT004888|pid:none) Drosophila melanogaster RE74933 fu... 37 0.80
BT029106_1(BT029106|pid:none) Drosophila melanogaster IP14717 fu... 36 1.1
AL645941_11(AL645941|pid:none) Human DNA sequence from clone XXb... 36 1.1
FN392319_994(FN392319|pid:none) Pichia pastoris GS115 chromosome... 36 1.1
CR759798_15(CR759798|pid:none) Human DNA sequence from clone DAM... 36 1.1
(Q55C84) RecName: Full=Bromodomain-containing protein DDB_G02701... 36 1.1
BC055611_1(BC055611|pid:none) Danio rerio bromodomain containing... 36 1.1
AL645941_12(AL645941|pid:none) Human DNA sequence from clone XXb... 36 1.1
AJ555149_1(AJ555149|pid:none) Homo sapiens partial mRNA for puta... 36 1.1
AF391288_5(AF391288|pid:none) Branchiostoma floridae cosmid MPMG... 36 1.1
(P25440) RecName: Full=Bromodomain-containing protein 2; AltName... 36 1.1
CP000721_4235(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 36 1.1
BX647233_1(BX647233|pid:none) Homo sapiens mRNA; cDNA DKFZp686N0... 36 1.1
(Q9H8M2) RecName: Full=Bromodomain-containing protein 9; AltName... 36 1.1
BX908719_7(BX908719|pid:none) Human DNA sequence from clone DAMA... 36 1.1
A56619(A56619;S18860;S40781) female sterile homeotic (fsh) homol... 36 1.1
X99228_1(X99228|pid:none) S.cerevisiae genomic sequence from chr... 36 1.1
(Q03330) RecName: Full=Histone acetyltransferase GCN5; ... 36 1.1
CT005272_347(CT005272|pid:none) Leishmania major strain Friedlin... 36 1.1
BC095028_1(BC095028|pid:none) Danio rerio wu:fi25h02, mRNA (cDNA... 36 1.1
AJ851576_1(AJ851576|pid:none) Gallus gallus mRNA for hypothetica... 36 1.1
AY074282_1(AY074282|pid:none) Arabidopsis thaliana unknown prote... 36 1.1
BC097199_1(BC097199|pid:none) Danio rerio hypothetical protein L... 36 1.1
AL645941_14(AL645941|pid:none) Human DNA sequence from clone XXb... 36 1.1
BX908719_9(BX908719|pid:none) Human DNA sequence from clone DAMA... 36 1.1
AB212273_1(AB212273|pid:none) Mus musculus Brd2 mRNA for bromodo... 36 1.4
(Q6MGA9) RecName: Full=Bromodomain-containing protein 2; AltName... 36 1.4
BC114643_1(BC114643|pid:none) Bos taurus bromodomain containing ... 36 1.4
AP008208_865(AP008208|pid:none) Oryza sativa (japonica cultivar-... 36 1.4
EU402599_1(EU402599|pid:none) Sus scrofa RING3 mRNA, partial cds. 36 1.4
(Q32S26) RecName: Full=Bromodomain-containing protein 2; &AY957... 36 1.4
(P34545) RecName: Full=Protein cbp-1; &G88564(G88564) &Z29095_1... 36 1.4
(Q5TJG6) RecName: Full=Bromodomain-containing protein 2; &AJ630... 36 1.4
(Q5ZKG2) RecName: Full=Bromodomain-containing protein 7; &AJ720... 36 1.4
AK220444_1(AK220444|pid:none) Mus musculus mRNA for mKIAA4005 pr... 36 1.4
CP000501_306(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 36 1.4
Z29095_3(Z29095|pid:none) Caenorhabditis elegans Cosmid R10E11, ... 36 1.4
CR974462_5(CR974462|pid:none) Mouse DNA sequence from clone RP23... 36 1.4
S60123(S60123;S40713)hypothetical protein R10E11.1 - Caenorhabdi... 36 1.4
Z29095_2(Z29095|pid:none) Caenorhabditis elegans Cosmid R10E11, ... 36 1.4
AM910991_212(AM910991|pid:none) Plasmodium knowlesi strain H chr... 36 1.4
BC073443_1(BC073443|pid:none) Xenopus laevis hypothetical protei... 35 1.8
AF254822_1(AF254822|pid:none) Homo sapiens SMARCA4 isoform (SMAR... 35 1.8
BC136644_1(BC136644|pid:none) Homo sapiens SWI/SNF related, matr... 35 1.8
S39059(S39059)protein BRG1 - human 35 1.8
BC161214_1(BC161214|pid:none) Xenopus tropicalis cDNA clone IMAG... 35 1.8
CP000246_813(CP000246|pid:none) Clostridium perfringens ATCC 131... 35 1.8
I53078(I53078) homeotic gene regulator - mouse (fragment) &S681... 35 1.8
AF077531_1(AF077531|pid:none) Caenorhabditis elegans cosmid F13C... 35 1.8
AK160825_1(AK160825|pid:none) Mus musculus 10 days embryo whole ... 35 1.8
AK147047_1(AK147047|pid:none) Mus musculus 17 days embryo kidney... 35 1.8
AK303352_1(AK303352|pid:none) Homo sapiens cDNA FLJ60382 complet... 35 1.8
EU430757_1(EU430757|pid:none) Homo sapiens SMARCA4 isoform 2 mRN... 35 1.8
BC097528_1(BC097528|pid:none) Xenopus laevis hypothetical protei... 35 1.8
AB179480_1(AB179480|pid:none) Macaca fascicularis testis cDNA cl... 35 1.8
BX088700_87(BX088700|pid:none) DNA centromeric region sequence f... 35 1.8
D26156_1(D26156|pid:none) Homo sapiens mRNA for transcriptional ... 35 1.8
AK299761_1(AK299761|pid:none) Homo sapiens cDNA FLJ60344 complet... 35 1.8
(P51532) RecName: Full=Probable global transcription activator S... 35 1.8
AX883877_1(AX883877|pid:none) Sequence 18782 from Patent EP10746... 35 1.8
BC153216_1(BC153216|pid:none) Bos taurus SWI/SNF related, matrix... 35 1.8
AF045462_1(AF045462|pid:none) Mus musculus female sterile homeot... 35 1.8
BC005281_1(BC005281|pid:none) Homo sapiens bromodomain, testis-s... 35 1.8
BC151849_1(BC151849|pid:none) Synthetic construct Homo sapiens c... 35 1.8
BT030372_1(BT030372|pid:none) Arabidopsis thaliana At1g76380 mRN... 35 2.3
BC031594_1(BC031594|pid:none) Mus musculus bromodomain and PHD f... 35 2.3
CU928165_129(CU928165|pid:none) Kluyveromyces thermotolerans str... 35 2.3
AE017349_346(AE017349|pid:none) Cryptococcus neoformans var. neo... 35 2.3
AL844506_207(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.3
CP000496_540(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 35 2.3
BC145256_1(BC145256|pid:none) Mus musculus bromodomain and PHD f... 35 2.3
AE017351_199(AE017351|pid:none) Cryptococcus neoformans var. neo... 35 2.3
AK043372_1(AK043372|pid:none) Mus musculus 7 days neonate cerebe... 35 3.1
AK037435_1(AK037435|pid:none) Mus musculus 16 days neonate thymu... 35 3.1
CR940347_854(CR940347|pid:none) Theileria annulata strain Ankara... 35 3.1
AK293865_1(AK293865|pid:none) Homo sapiens cDNA FLJ60100 complet... 35 3.1
AK129322_1(AK129322|pid:none) Mus musculus mRNA for mKIAA1286 pr... 35 3.1
BC046521_1(BC046521|pid:none) Mus musculus bromodomain and PHD f... 35 3.1
D26362_1(D26362|pid:none) Homo sapiens KIAA0043 mRNA, partial cds. 35 3.1
(P55201) RecName: Full=Peregrin; AltName: Full=Bromodomain and P... 35 3.1
CP000961_3273(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 35 3.1
CP000123_696(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 3.1
AB206708_1(AB206708|pid:none) Mus musculus Orfx mRNA, complete c... 35 3.1
AL445931_5(AL445931|pid:none) Human DNA sequence from clone RP11... 35 3.1
CP001078_966(CP001078|pid:none) Clostridium botulinum E3 str. Al... 35 3.1
BC005647_1(BC005647|pid:none) Mus musculus bromodomain and PHD f... 35 3.1
BC157915_1(BC157915|pid:none) Mus musculus bromodomain and PHD f... 35 3.1
JC2069(JC2069)zinc-finger protein, BR140 - human 35 3.1
BC031536_1(BC031536|pid:none) Mus musculus bromodomain containin... 35 3.1
(Q6FTW5) RecName: Full=Histone acetyltransferase GCN5; ... 35 3.1
CP000497_191(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 35 3.1
(Q8K2F0) RecName: Full=Bromodomain-containing protein 3; AltName... 35 3.1
EF677880_1(EF677880|pid:none) Picea sitchensis clone WS0277_C21 ... 35 3.1
AF269193_1(AF269193|pid:none) Mus musculus bromodomain-containin... 35 3.1
CU928175_487(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 35 3.1
BC138361_1(BC138361|pid:none) Mus musculus bromodomain and PHD f... 35 3.1
FM992689_189(FM992689|pid:none) Candida dubliniensis CD36 chromo... 35 3.1
AB212272_1(AB212272|pid:none) Mus musculus Orfx mRNA for open re... 35 3.1
BC004832_1(BC004832|pid:none) Mus musculus bromodomain containin... 35 3.1
AL844506_181(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 35 3.1
AK156375_1(AK156375|pid:none) Mus musculus activated spleen cDNA... 35 3.1
BC154088_1(BC154088|pid:none) Xenopus tropicalis hypothetical pr... 34 4.0
CR382122_547(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 34 4.0
CU928169_605(CU928169|pid:none) Kluyveromyces thermotolerans str... 34 4.0
(Q8CDM1) RecName: Full=ATPase family AAA domain-containing prote... 34 4.0
CU928180_17(CU928180|pid:none) Kluyveromyces thermotolerans stra... 34 4.0
BC055508_1(BC055508|pid:none) Danio rerio bromodomain containing... 34 4.0
(Q54BA2) RecName: Full=Ankyrin repeat, bromo and BTB domain-cont... 34 4.0
(Q9W0T1) RecName: Full=Nucleosome-remodeling factor subunit NURF... 34 5.2
BC168574_1(BC168574|pid:none) Xenopus tropicalis bromodomain con... 34 5.2
BC045866_1(BC045866|pid:none) Danio rerio bromodomain-containing... 34 5.2
CR382122_128(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 34 5.2
BX950178_2(BX950178|pid:none) Zebrafish DNA sequence from clone ... 34 5.2
BC055533_1(BC055533|pid:none) Danio rerio bromodomain containing... 34 5.2
CR762100_1(CR762100|pid:none) Xenopus tropicalis finished cDNA, ... 34 5.2
AE014296_66(AE014296|pid:none) Drosophila melanogaster chromosom... 34 5.2
AB268588_27(AB268588|pid:none) Gallus gallus genes, MHC region, ... 34 5.2
AB426142_8(AB426142|pid:none) Gallus gallus genes, MHC region, p... 34 5.2
AM469918_3(AM469918|pid:none) Vitis vinifera contig VV78X033990.... 34 5.2
BC152644_1(BC152644|pid:none) Danio rerio bromodomain containing... 34 5.2
CS185621_1(CS185621|pid:none) Sequence 104 from Patent EP1591448. 34 5.2
AF417921_1(AF417921|pid:none) Drosophila melanogaster nucleosome... 34 5.2
(Q5RDX4) RecName: Full=ATPase family AAA domain-containing prote... 34 5.2
DQ993255_26(DQ993255|pid:none) Meleagris gallopavo major histoco... 34 5.2
BC151886_1(BC151886|pid:none) Danio rerio bromodomain containing... 34 5.2
BC043784_1(BC043784|pid:none) Xenopus laevis bromodomain contain... 33 6.8
AK175811_1(AK175811|pid:none) Arabidopsis thaliana mRNA for hypo... 33 6.8
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 33 6.8
AC005074_1(AC005074|pid:none) Homo sapiens BAC clone CTA-208H19 ... 33 6.8
EF210363_7(EF210363|pid:none) Salmo salar clone CH214-714P22 MHC... 33 6.8
FN392321_729(FN392321|pid:none) Pichia pastoris GS115 chromosome... 33 6.8
FJ668151_1(FJ668151|pid:none) Daphnia pulex strain LP8 mannose-p... 33 6.8
BT037312_1(BT037312|pid:none) Zea mays full-length cDNA clone ZM... 33 6.8
EF427384_7(EF427384|pid:none) Salmo salar clone BAC CHORI214-92I... 33 6.8
FJ668114_1(FJ668114|pid:none) Daphnia parvula strain A60 mannose... 33 6.8
DQ431713_1(DQ431713|pid:none) Neurospora crassa histone acetyltr... 33 6.8
FJ668147_1(FJ668147|pid:none) Daphnia pulex strain BW102 mannose... 33 6.8
S32373(S32373)DNA-binding protein TAF-II 250K - fruit fly (Droso... 33 6.8
BC155901_1(BC155901|pid:none) Xenopus laevis bromodomain contain... 33 6.8
CR380949_98(CR380949|pid:none) Candida glabrata strain CBS138 ch... 33 6.8
BC106309_1(BC106309|pid:none) Xenopus laevis bromodomain contain... 33 6.8
AC117080_22(AC117080|pid:none) Dictyostelium discoideum chromoso... 33 6.8
(Q9ULI0) RecName: Full=ATPase family AAA domain-containing prote... 33 8.9
AK131301_1(AK131301|pid:none) Homo sapiens cDNA FLJ16266 fis, cl... 33 8.9
CU928174_532(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 33 8.9
CU459003_3691(CU459003|pid:none) Magnetospirillum gryphiswaldens... 33 8.9
CP000939_1344(CP000939|pid:none) Clostridium botulinum B1 str. O... 33 8.9
AK125718_1(AK125718|pid:none) Homo sapiens cDNA FLJ43730 fis, cl... 33 8.9
AE014188_146(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 33 8.9
(Q6NVM8) RecName: Full=Bromodomain-containing protein 9; &BC067... 33 8.9
AM270079_55(AM270079|pid:none) Aspergillus niger contig An04c018... 33 8.9
CP000498_275(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 33 8.9
AE006914_445(AE006914|pid:none) Rickettsia conorii str. Malish 7... 33 8.9
AM445275_1(AM445275|pid:none) Vitis vinifera contig VV78X180677.... 33 8.9
FJ014471_1(FJ014471|pid:none) Camellia sinensis senescence-relat... 33 8.9
FN392321_64(FN392321|pid:none) Pichia pastoris GS115 chromosome ... 33 8.9
CP000721_1292(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 33 8.9
AL844506_132(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 33 8.9
>BC070273_1(BC070273|pid:none) Homo sapiens cDNA clone
IMAGE:6714197, partial cds.
Length = 245
Score = 53.5 bits (127), Expect = 6e-06
Identities = 35/114 (30%), Positives = 56/114 (49%)
Frame = +2
Query: 140 TDKPGDSRPISSYFKNIPSLSEFDSELLTDYYSMISEPMSINSILSSVIYTADYNIDNCL 319
TDK G R +S+ F +PS SE L DYY I +PM + I S ++ +ID+ +
Sbjct: 48 TDKRG--RRLSAIFLRLPSRSE-----LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMV 100
Query: 320 DDFNQVLENSMTYNSENSIIYWLAHYCKIELYKALSNSGIIQNKLYLDIKKDSE 481
+DF + N+ TYN S+IY ++ +K+ L+ ++D E
Sbjct: 101 EDFVMMFNNACTYNEPESLIY---------------KDALVLHKVLLETRRDLE 139
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 833,150,810
Number of extensions: 14426470
Number of successful extensions: 35140
Number of sequences better than 10.0: 273
Number of HSP's gapped: 35082
Number of HSP's successfully gapped: 315
Length of query: 241
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 116
Effective length of database: 646,610,989
Effective search space: 75006874724
Effective search space used: 75006874724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |