Contig-U03994-1
Contig ID Contig-U03994-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03994-1 (Contig-U03994-1Q) /CSM_Contig/Contig-U03994-1Q.Seq.d
AGCAACAGCAACAACAACAAAAACCTAATGGTCTTAAACTATCAATATCA
TCAGGTTCAATTAAAGATTTAATAAATTCACCAAATAAAGAACAATCATC
GAAATCACAATATCCATCATCATTATCACAATCATCATCTATACCCGATA
TGGATACTGATGTTGATAGTACTGATGAATTTGATTTTGGTAGTAATAGT
AATAATAATAACAATAATAATAATAATAATAATAATAA

Gap no gap
Contig length 238
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3477905
End point 3478038
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03994
List of clone(s)

est1=SLD822F,1,239
Translated Amino Acid sequence
QQQQQQKPNGLKLSISSGSIKDLINSPNKEQSSKSQYPSSLSQSSSIPDMDTDVDSTDEF
DFGSNSNNNNNNNNNNNN


Translated Amino Acid sequence (All Frames)
Frame A:
snsnnnknlmvlnyqyhqvqlki**ihqiknnhrnhnihhhyhnhhlypiwilmlivlmn
lilvviviiitiiiiiiii


Frame B:
atatttkt*ws*tiniirfn*rfnkftk*rtiieitisiiiitiiiytrygy*c**y**i
*fw*******q********


Frame C:
QQQQQQKPNGLKLSISSGSIKDLINSPNKEQSSKSQYPSSLSQSSSIPDMDTDVDSTDEF
DFGSNSNNNNNNNNNNNN


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03994-1 (Contig-U03994-1Q)
/CSM_Contig/Contig-U03994-1Q.Seq.d
(238 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03994-1 (Contig-U03994-1Q) /CSM_Contig/Conti... 383 e-107
Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U12391-1 (Contig-U12391-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U11124-1 (Contig-U11124-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U07417-1 (Contig-U07417-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U06745-1 (Contig-U06745-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Conti... 40 0.001
Contig-U14181-1 (Contig-U14181-1Q) /CSM_Contig/Conti... 40 0.001
Contig-U08962-1 (Contig-U08962-1Q) /CSM_Contig/Conti... 28 3.9

>Contig-U03994-1 (Contig-U03994-1Q) /CSM_Contig/Contig-U03994-1Q.Seq.d
Length = 238

Score = 383 bits (193), Expect = e-107
Identities = 193/193 (100%)
Strand = Plus / Plus


Query: 1 agcaacagcaacaacaacaaaaacctaatggtcttaaactatcaatatcatcaggttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcaacagcaacaacaacaaaaacctaatggtcttaaactatcaatatcatcaggttcaa 60


Query: 61 ttaaagatttaataaattcaccaaataaagaacaatcatcgaaatcacaatatccatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaaagatttaataaattcaccaaataaagaacaatcatcgaaatcacaatatccatcat 120


Query: 121 cattatcacaatcatcatctatacccgatatggatactgatgttgatagtactgatgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattatcacaatcatcatctatacccgatatggatactgatgttgatagtactgatgaat 180


Query: 181 ttgattttggtag 193
|||||||||||||
Sbjct: 181 ttgattttggtag 193


>Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Contig-U13044-1Q.Seq.d
Length = 570

Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaaaaa 23
|||||||||||||||||||||
Sbjct: 445 caacagcaacaacaacaaaaa 465


Score = 28.2 bits (14), Expect = 3.9
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaa 20
||||| ||||||||||||
Sbjct: 1 caacaacaacaacaacaa 18


Score = 28.2 bits (14), Expect = 3.9
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaa 20
||||| ||||||||||||
Sbjct: 427 caacaacaacaacaacaa 444


Score = 28.2 bits (14), Expect = 3.9
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaa 20
||||| ||||||||||||
Sbjct: 430 caacaacaacaacaacaa 447


>Contig-U12391-1 (Contig-U12391-1Q) /CSM_Contig/Contig-U12391-1Q.Seq.d
Length = 1298

Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaaaaa 23
|||||||||||||||||||||
Sbjct: 486 caacagcaacaacaacaaaaa 506


Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1 agcaacagcaacaacaacaa 20
||||||||||||||||||||
Sbjct: 355 agcaacagcaacaacaacaa 374


Score = 32.2 bits (16), Expect = 0.25
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1 agcaacagcaacaacaacaa 20
||||||| ||||||||||||
Sbjct: 361 agcaacaacaacaacaacaa 380


Score = 32.2 bits (16), Expect = 0.25
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaac 18
||||||||||||||||
Sbjct: 273 caacagcaacaacaac 288


Score = 32.2 bits (16), Expect = 0.25
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1 agcaacagcaacaacaacaa 20
||||||| ||||||||||||
Sbjct: 448 agcaacaacaacaacaacaa 467


Score = 30.2 bits (15), Expect = 0.99
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 10 aacaacaacaaaaac 24
|||||||||||||||
Sbjct: 969 aacaacaacaaaaac 983


Score = 30.2 bits (15), Expect = 0.99
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 6 cagcaacaacaacaa 20
|||||||||||||||
Sbjct: 447 cagcaacaacaacaa 461


Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 3 caacagcaacaaca 16
||||||||||||||
Sbjct: 477 caacagcaacaaca 490


Score = 28.2 bits (14), Expect = 3.9
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaa 20
||||| ||||||||||||
Sbjct: 369 caacaacaacaacaacaa 386


Score = 28.2 bits (14), Expect = 3.9
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 3 caacagcaacaacaacaa 20
||||| ||||||||||||
Sbjct: 366 caacaacaacaacaacaa 383


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,325
Number of Sequences: 6905
Number of extensions: 11325
Number of successful extensions: 7442
Number of sequences better than 10.0: 948
length of query: 238
length of database: 5,674,871
effective HSP length: 15
effective length of query: 223
effective length of database: 5,571,296
effective search space: 1242399008
effective search space used: 1242399008
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.10
Homology vs DNA
Query= Contig-U03994-1 (Contig-U03994-1Q) /CSM_Contig/Contig-U03994-1Q.Seq.d
(238 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU061355) Dictyostelium discoideum slug cDNA, clone SLD822. 184 3e-68 2
(AJ581661) Dictyostelium discoideum partial dstB gene for Dd... 184 5e-67 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 40 0.001 3
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 48 0.008 4
(AL355338) Human DNA sequence from clone RP11-12G12 on chrom... 52 0.009 1
(AL158081) Human DNA sequence from clone RP11-358A9 on chrom... 52 0.009 1
(BX571816) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 52 0.009 1
(AL161634) Human DNA sequence *** SEQUENCING CANCELLED *** f... 52 0.009 1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 40 0.010 4
(AL163248) Homo sapiens chromosome 21 segment HS21C048. 40 0.023 2
(AC098019) Rattus norvegicus clone CH230-108L16, *** SEQUENC... 36 0.023 2
(AC125844) Rattus norvegicus clone CH230-49H8, *** SEQUENCIN... 36 0.023 2
(AF207955) Homo sapiens chromosome 21q22.1 PAC N2139, comple... 40 0.024 2
(AL732484) Mouse DNA sequence from clone RP23-37B7 on chromo... 50 0.037 1
(AC159323) Mus musculus BAC clone RP23-6I8 from chromosome 1... 50 0.037 1
(AC159007) Mus musculus BAC clone RP23-9O3 from chromosome 1... 50 0.037 1
(AC157572) Mus musculus BAC clone RP23-79O10 from chromosome... 50 0.037 1
(AC140358) Mus musculus BAC clone RP24-234L7 from 3, complet... 50 0.037 1
(AC129592) Mus musculus BAC clone RP24-86A6 from chromosome ... 50 0.037 1
(AC129179) Mus musculus BAC clone RP23-240C24 from chromosom... 50 0.037 1
(AC127314) Mus musculus BAC clone RP23-217N4 from chromosome... 50 0.037 1
(AC122366) Mus musculus BAC clone RP23-447K15 from 14, compl... 50 0.037 1
(AC119847) Mus musculus chromosome 3, clone RP23-46L5, compl... 50 0.037 1
(AL157858) Human chromosome 14 DNA sequence BAC R-187A6 of l... 50 0.037 1
(AC104051) Homo sapiens chromosome 8, clone CTD-2339F6, comp... 50 0.037 1
(AC103842) Homo sapiens chromosome 8, clone RP11-367J23, com... 50 0.037 1
(AC158221) Mus musculus chromosome 8 clone RP23-128N7 map 8,... 50 0.037 1
(AC155191) Bos taurus clone CH240-42O16, WORKING DRAFT SEQUE... 50 0.037 1
(AC134136) Rattus norvegicus clone CH230-298J1, *** SEQUENCI... 50 0.037 1
(AC128779) Rattus norvegicus clone CH230-427C9, *** SEQUENCI... 50 0.037 1
(AC118773) Rattus norvegicus clone CH230-404F8, *** SEQUENCI... 50 0.037 1
(AC118076) Rattus norvegicus clone CH230-149P20, *** SEQUENC... 50 0.037 1
(AC106521) Rattus norvegicus clone CH230-29H24, *** SEQUENCI... 50 0.037 1
(AC105375) Felis catus clone RP86-176J15, WORKING DRAFT SEQU... 50 0.037 1
(AC103154) Rattus norvegicus clone CH230-200G13, *** SEQUENC... 50 0.037 1
(AC079533) Mus musculus clone RP23-348M1, WORKING DRAFT SEQU... 50 0.037 1
(AC198849) Spermophilus tridecemlineatus clone VMRC20-474A15... 50 0.037 1
(AK086397) Mus musculus 15 days embryo head cDNA, RIKEN full... 50 0.037 1
(AZ077852) RPCI-23-409B13.TV RPCI-23 Mus musculus genomic cl... 50 0.037 1
(AQ921710) RPCI-23-277J4.TVB RPCI-23 Mus musculus genomic cl... 50 0.037 1
(AG343369) Mus musculus molossinus DNA, clone:MSMg01-137H02.... 50 0.037 1
(EL437542) CHTM12497.b1_A06.ab1 CHT(LMS) Jerusalem artichoke... 50 0.037 1
(BB525320) Mus musculus 15 days embryo head cDNA, RIKEN full... 50 0.037 1
(BX957260) Zebrafish DNA sequence from clone DKEY-1N7 in lin... 48 0.14 1
(BC068428) Danio rerio splicing factor proline/glutamine ric... 48 0.14 1
(AY648751) Danio rerio proline/glutamine rich splicing facto... 48 0.14 1
(BV725418) D15Roc1 Mus musculus NFS/N-sld Genomic DNA Mus mu... 48 0.14 1
(CT025576) Mouse DNA sequence from clone RP23-286F8 on chrom... 48 0.14 1
(CT010568) Mouse DNA sequence from clone RP23-290F22 on chro... 48 0.14 1
(AL645630) Mouse DNA sequence from clone RP23-8C1 on chromos... 48 0.14 1
(AC159099) Mus musculus chromosome 15, clone RP24-132A22, co... 48 0.14 1
(AC154550) Mus musculus BAC clone RP23-444H18 from chromosom... 48 0.14 1
(AC125539) Mus musculus BAC clone RP23-150M18 from 15, compl... 48 0.14 1
(AC119177) Mus musculus chromosome 15, clone RP24-559L16, co... 48 0.14 1
(AC113983) Mus musculus chromosome 5, clone RP24-95M11, comp... 48 0.14 1
(AC102896) Mus musculus chromosome 5, clone RP24-353A8, comp... 48 0.14 1
(AC099713) Mus musculus chromosome 15, clone RP23-447B6, com... 48 0.14 1
(AC190297) Rhesus Macaque BAC CH250-135G7 () complete seque... 48 0.14 1
(AC196764) Medicago truncatula chromosome 2 BAC clone mte1-5... 48 0.14 1
(AC133555) Homo sapiens chromosome 16 clone RP11-345J4, comp... 48 0.14 1
(AC120305) Homo sapiens 3 BAC RP11-570H17 (Roswell Park Canc... 48 0.14 1
(AC027045) Homo sapiens chromosome 17, clone RP11-477N12, co... 48 0.14 1
(AC025279) Homo sapiens chromosome 16 clone RP11-231C14, com... 48 0.14 1
(AC009124) Homo sapiens chromosome 16 clone RP11-489A11, com... 48 0.14 1
(AC008740) Homo sapiens chromosome 16 clone CTD-2547E10, com... 48 0.14 1
(AC161685) Bos taurus clone CH240-103N17, WORKING DRAFT SEQU... 48 0.14 1
(AC150450) Callithrix jacchus clone CH259-124G15, WORKING DR... 48 0.14 1
(AC142201) Homo sapiens chromosome 16 clone RP11-403M2, WORK... 48 0.14 1
(AC138881) Homo sapiens chromosome 16 clone RP11-276F5, WORK... 48 0.14 1
(AC131201) Rattus norvegicus clone CH230-367K5, WORKING DRAF... 48 0.14 1
(AC130068) Rattus norvegicus clone CH230-313L4, *** SEQUENCI... 48 0.14 1
(AC129634) Rattus norvegicus clone CH230-236J10, *** SEQUENC... 48 0.14 1
(AC128511) Rattus norvegicus clone CH230-105B5, *** SEQUENCI... 48 0.14 1
(AC127664) Rattus norvegicus clone CH230-101A1, *** SEQUENCI... 48 0.14 1
(AC126854) Rattus norvegicus clone CH230-12M7, WORKING DRAFT... 48 0.14 1
(AC126758) Homo sapiens chromosome 16 clone RP11-1271J19, WO... 48 0.14 1
(AC118405) Rattus norvegicus clone CH230-163A10, WORKING DRA... 48 0.14 1
(AC118398) Rattus norvegicus clone CH230-117P20, *** SEQUENC... 48 0.14 1
(AC114623) Mus musculus clone RP24-104G17, WORKING DRAFT SEQ... 48 0.14 1
(AC106078) Rattus norvegicus clone CH230-106J20, *** SEQUENC... 48 0.14 1
(AC095585) Rattus norvegicus clone CH230-8I12, *** SEQUENCIN... 48 0.14 1
(AC095204) Rattus norvegicus clone CH230-9J19, *** SEQUENCIN... 48 0.14 1
(AC095105) Rattus norvegicus clone CH230-7H3, *** SEQUENCING... 48 0.14 1
(FP102284) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.14 1
(CU928416) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.14 1
(AC087646) Homo sapiens chromosome 17 clone RP11-773O21 map ... 48 0.14 1
(AC069176) Homo sapiens chromosome 11 clone RP11-1122L9 map ... 48 0.14 1
(AC069006) Homo sapiens chromosome RPCI-11 clone RP11-773O21... 48 0.14 1
(AC026855) Homo sapiens chromosome 17 clone RP11-208F13, WOR... 48 0.14 1
(CU075408) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.14 1
(AL645945) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.14 1
(AL450123) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.14 1
(AC234497) Ochotona princeps clone VMRC40-236D14, WORKING DR... 48 0.14 1
(AC231931) Medicago truncatula chromosome 7 clone mth4-36h24... 48 0.14 1
(AC193692) Macaca mulatta clone CH250-351N15, WORKING DRAFT ... 48 0.14 1
(AC188344) Aotus nancymaae clone CH258-442H14, WORKING DRAFT... 48 0.14 1
(AC187933) Aotus nancymaae clone CH258-244M7, WORKING DRAFT ... 48 0.14 1
(AC177072) Strongylocentrotus purpuratus clone R3-4004J23, W... 48 0.14 1
(AC176235) Strongylocentrotus purpuratus clone R3-3060P13, W... 48 0.14 1
(AC172404) Strongylocentrotus purpuratus clone R3-14C8, WORK... 48 0.14 1
(AC170669) Bos taurus clone CH240-225K3, WORKING DRAFT SEQUE... 48 0.14 1
(AC023814) Homo sapiens chromosome 16 clone CTD-2159J19, WOR... 48 0.14 1
(AC023463) Homo sapiens chromosome 6 clone RP11-403M2 map 6,... 48 0.14 1
(AC008864) Homo sapiens chromosome 16 clone CTD-2192M20, WOR... 48 0.14 1
(EI707455) IGBR08A07TR BAC library from the recurrent gliobl... 48 0.14 1
(DH816132) Rattus norvegicus DNA, BAC clone: RNB1-418D09, 5'... 48 0.14 1
(DH769936) Rattus norvegicus DNA, BAC clone: RNB1-354H08, 3'... 48 0.14 1
(DH649788) Rattus norvegicus DNA, BAC clone: RNB1-192F24, 5'... 48 0.14 1
(DH407855) Oryzias latipes Fosmid clone:GOLWFno812_f17, reve... 48 0.14 1
(CU134551) Equus caballus GSS, BAC clone CH241-255H9, SP6 en... 48 0.14 1
(AG121783) Pan troglodytes DNA, clone: PTB-130O24.F. 48 0.14 1
(EG573028) AGENCOURT_88127040 NIH_ZGC_35 Danio rerio cDNA cl... 48 0.14 1
(EE860455) 010914OSTA086004HT OSTA Ovis aries cDNA, mRNA seq... 48 0.14 1
(EB941145) 9540219 ZF34 Danio rerio cDNA clone 3412048, mRNA... 48 0.14 1
(EB904343) 10420954 ZF28 Danio rerio cDNA clone 3325707, mRN... 48 0.14 1
(EB868677) 6721770 ZF03 Danio rerio cDNA clone 2582137, mRNA... 48 0.14 1
(CT716970) Danio rerio EST, clone ZF_mu_228n13 5'. 48 0.14 1
(CT701909) Danio rerio EST, clone ZF_mu_189a10 5'. 48 0.14 1
(CT664986) Danio rerio EST, clone ZF_mu_235k17 5'. 48 0.14 1
(CT658692) Danio rerio EST, clone ZF_mu_12j07 5'. 48 0.14 1
(CT651760) Danio rerio EST, clone ZF_mu_123f07 5'. 48 0.14 1
(CT647062) Danio rerio EST, clone ZF_mu_112b09 5'. 48 0.14 1
(CT638976) Danio rerio EST, clone ZF_mu_139a16 5'. 48 0.14 1
(CT618349) Danio rerio EST, clone ZF_mu_41b08 5'. 48 0.14 1
(CT610724) Danio rerio EST, clone ZF_mu_123e06 5'. 48 0.14 1
(CO354675) DR_ATE_FL29_G05 adult testis full-length (TLL) Da... 48 0.14 1
(CK240165) AGENCOURT_16982070 NCI_CGAP_ZKid1 Danio rerio cDN... 48 0.14 1
(CK148124) AGENCOURT_16917514 NCI_CGAP_ZEmb2 Danio rerio cDN... 48 0.14 1
(CK147460) AGENCOURT_16919719 NCI_CGAP_ZEmb2 Danio rerio cDN... 48 0.14 1
(CK030406) AGENCOURT_16620573 NIH_ZGC_7 Danio rerio cDNA clo... 48 0.14 1
(CK026319) AGENCOURT_16624567 NIH_ZGC_7 Danio rerio cDNA clo... 48 0.14 1
(CK018482) AGENCOURT_16545308 NIH_ZGC_10 Danio rerio cDNA cl... 48 0.14 1
(CF999863) AGENCOURT_16388822 NIH_ZGC_7 Danio rerio cDNA clo... 48 0.14 1
(CF998521) AGENCOURT_16389159 NIH_ZGC_7 Danio rerio cDNA clo... 48 0.14 1
(CD281705) G44219.12 NCI_CGAP_ZEmb2 Danio rerio cDNA clone I... 48 0.14 1
(CD053174) LITHZF000602 Zebrafish shield stage whole embryo ... 48 0.14 1
(CA471204) AGENCOURT_10698261 NCI_CGAP_ZKid1 Danio rerio cDN... 48 0.14 1
(BY824386) Thellungiella halophila cDNA clone: RTFL01-36-J08... 48 0.14 1
(AI353096) zeh0027.seq.F Zebrafish Embryonic Heart cDNA Libr... 48 0.14 1
(FP224244) Danio rerio EST, clone ZF_invA72g13 5'. 48 0.14 1
(FP217914) Danio rerio EST, clone ZF_invA68o17 5'. 48 0.14 1
(FP214144) Danio rerio EST, clone ZF_invA66e01 5'. 48 0.14 1
(FP160934) Danio rerio EST, clone ZF_invA24m01 5'. 48 0.14 1
(FP133194) Danio rerio EST, clone ZF_invB57d24 5'. 48 0.14 1
(EV761320) AGENCOURT_109127241 NIH_ZGC_30 Danio rerio cDNA c... 48 0.14 1
(AW280466) fj40h10.y1 zebrafish adult brain Danio rerio cDNA... 48 0.14 1
(AX838354) Sequence 3 from Patent WO0206846. 46 0.24 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.30 4
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 40 0.32 4
(CR762446) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.32 2
(AC010900) Homo sapiens BAC clone RP11-544H14 from 2, comple... 34 0.32 2
(BX901901) Zebrafish DNA sequence from clone CH211-223B8 in ... 38 0.32 2
(GN008166) Sequence 607 from Patent EP2014669. 46 0.34 2
(AU061542) Dictyostelium discoideum slug cDNA, clone SLE595. 40 0.36 2
(BJ429194) Dictyostelium discoideum cDNA clone:ddv2m15, 3' e... 40 0.40 2
(AC107167) Rattus norvegicus clone CH230-207C23, *** SEQUENC... 46 0.40 2
(AC170920) Mus musculus chromosome 17 clone RP23-127I22, WOR... 44 0.40 2
(AC140936) Gallus gallus chromosome UNK clone TAM31-90P6, co... 46 0.41 3
(AC159103) Mus musculus BAC clone RP23-424O13 from chromosom... 42 0.45 3
(CR385047) Zebrafish DNA sequence from clone DKEY-221N16 in ... 46 0.57 1
(CR354377) Zebrafish DNA sequence from clone CH211-12J24 in ... 46 0.57 1
(BX470164) Zebrafish DNA sequence from clone DKEY-24L11 in l... 46 0.57 1
(AC096845) Takifugu rubripes clone 214J14, complete sequence. 46 0.57 1
(BV682648) GBL031770 Ensembl chicken genome sequences browse... 46 0.57 1
(BV487999) S216P61986FF4.T0 Masuku Pan troglodytes troglodyt... 46 0.57 1
(BV068617) S212P60155FB3.T0 CZECHII/Ei Mus musculus STS geno... 46 0.57 1
(BX571885) Mouse DNA sequence from clone RP23-17O21 on chrom... 46 0.57 1
(BX324120) Mouse DNA sequence from clone RP24-405D9 on chrom... 46 0.57 1
(AL928537) Mouse DNA sequence from clone RP23-236E7 on chrom... 46 0.57 1
(AL844598) Mouse DNA sequence from clone RP23-389D24 on chro... 46 0.57 1
(AL732525) Mouse DNA sequence from clone RP23-358I10 on chro... 46 0.57 1
(AL731773) Mouse DNA sequence from clone RP23-152G20 on chro... 46 0.57 1
(AL731678) Mouse DNA sequence from clone RP23-39H12 on chrom... 46 0.57 1
(AL731674) Mouse DNA sequence from clone RP23-340M18 on chro... 46 0.57 1
(AL663115) Mouse DNA sequence from clone RP23-452C23 on chro... 46 0.57 1
(AC164568) Mus musculus BAC clone RP23-7A23 from chromosome ... 46 0.57 1
(AC159622) Mus musculus BAC clone RP24-289D12 from chromosom... 46 0.57 1
(AC158903) Mus musculus chromosome 18, clone RP23-318E22, co... 46 0.57 1
(AC157277) Mus musculus BAC clone RP23-465H15 from chromosom... 46 0.57 1
(AC156274) Mus musculus 10 BAC RP24-286P15 (Roswell Park Can... 46 0.57 1
(AC155314) Mus musculus BAC clone RP23-275G21 from chromosom... 46 0.57 1
(AC155287) Mus musculus 6 BAC RP23-103G18 (Roswell Park Canc... 46 0.57 1
(AC154474) Mus musculus BAC clone RP24-122P10 from chromosom... 46 0.57 1
(AC154428) Mus musculus BAC clone RP24-200P20 from chromosom... 46 0.57 1
(AC153971) Mus musculus 10 BAC RP24-254O21 (Roswell Park Can... 46 0.57 1
(AC153910) Mus musculus 6 BAC RP23-337M7 (Roswell Park Cance... 46 0.57 1
(AC153899) Mus musculus BAC RP23-128C4 (Roswell Park Cancer... 46 0.57 1
(AC153550) Mus musculus 10 BAC RP23-250H23 (Roswell Park Can... 46 0.57 1
(AC131120) Mus musculus BAC clone RP24-547N4 from 10, comple... 46 0.57 1
(AC130539) Mus musculus BAC clone RP23-455J15 from chromosom... 46 0.57 1
(AC130212) Mus musculus BAC clone RP23-461L3 from chromosome... 46 0.57 1
(AC125528) Mus musculus BAC clone RP23-365I9 from chromosome... 46 0.57 1
(AC122349) Mus musculus BAC clone RP23-383O11 from chromosom... 46 0.57 1
(AC115737) Mus musculus chromosome 3, clone RP23-473G18, com... 46 0.57 1
(AC113945) Mus musculus chromosome 3, clone RP24-96D10, comp... 46 0.57 1
(AC112143) Mus musculus BAC clone RP23-29E2 from chromosome ... 46 0.57 1
(AC102393) Mus musculus chromosome 18, clone RP24-125H9, com... 46 0.57 1
(AC100927) Mus musculus chromosome 3, clone RP23-72A21, comp... 46 0.57 1
(CT574593) Pan troglodytes chromosome X clone RP43-059H19 ma... 46 0.57 1
(BS000669) Pan troglodytes chromosome Y clone:PTB-529M03, co... 46 0.57 1
(BS000615) Pan troglodytes chromosome Y clone:PTBY-009P07, c... 46 0.57 1
(BS000609) Pan troglodytes chromosome Y clone:PTB-217K15, co... 46 0.57 1
(BS000127) Pan troglodytes chromosome 22 clone:PTB-099K02, m... 46 0.57 1
(BS000126) Pan troglodytes chromosome 22 clone:PTB-128A24, m... 46 0.57 1
(AC206039) Pongo abelii BAC clone CH276-332M10 from chromoso... 46 0.57 1
(AC188567) Pan troglodytes BAC clone CH251-627G13 from chrom... 46 0.57 1
(AC147675) Pan troglodytes BAC clone CH251-6P20 from Y, comp... 46 0.57 1
(AC146453) Pan troglodytes BAC clone CH251-510F17 from Y, co... 46 0.57 1
(AM435769) Vitis vinifera contig VV78X261368.4, whole genome... 46 0.57 1
(GC701693) Sequence 16938 from patent US 6812339. 46 0.57 1
(CU462949) Pig DNA sequence from clone CH242-344D21 on chrom... 46 0.57 1
(AJ575650) Sus scrofa partial GBA gene for putative lysosoma... 46 0.57 1
(AC190364) Atelerix albiventris clone LB4-419B9, complete se... 46 0.57 1
(AM494972) Leishmania braziliensis chromosome 35. 46 0.57 1
(D26141) Homo sapiens DNA, NF1 gene homologue. 46 0.57 1
(AY898799) Homo sapiens NF1-ch21 pseudogene, complete sequence. 46 0.57 1
(AY898798) Homo sapiens NF1-ch18 pseudogene, complete sequence. 46 0.57 1
(AP001730) Homo sapiens genomic DNA, chromosome 21q, section... 46 0.57 1
(AP001660) Homo sapiens genomic DNA, chromosome 21q, section... 46 0.57 1
(AP001634) Homo sapiens genomic DNA, chromosome 21q11.1 clon... 46 0.57 1
(AP001417) Homo sapiens genomic DNA, chromosome 21q22.2, LB7... 46 0.57 1
(AP001004) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 46 0.57 1
(AP000160) Homo sapiens genomic DNA, chromosome 21q22.2, DSC... 46 0.57 1
(AP000019) Homo sapiens genomic DNA of 21q22.2 Down Syndrome... 46 0.57 1
(AL603882) Human DNA sequence from clone RP11-630I5 on chrom... 46 0.57 1
(AL451010) Human DNA sequence from clone RP11-163M2 on chrom... 46 0.57 1
(AL358612) Human DNA sequence from clone RP11-435M3 on chrom... 46 0.57 1
(AL158829) Human DNA sequence from clone RP11-406O23 on chro... 46 0.57 1
(AL096710) Human DNA sequence from clone RP1-61B2 on chromos... 46 0.57 1
(AJ271735) Homo sapiens Xq pseudoautosomal region; segment 1/2. 46 0.57 1
(AC130472) Homo sapiens chromosome 3 clone RP11-395P16, comp... 46 0.57 1
(AC107896) Homo sapiens chromosome 18, clone RP11-718I15, co... 46 0.57 1
(AC107398) Homo sapiens BAC clone RP11-731J8 from 4, complet... 46 0.57 1
(AC092833) Homo sapiens BAC clone RP13-490C19 from 2, comple... 46 0.57 1
(AC092366) Homo sapiens chromosome 5 clone RP11-461C13, comp... 46 0.57 1
(AC090402) Homo sapiens chromosome 18, clone RP11-739D7, com... 46 0.57 1
(AC079113) Homo sapiens BAC clone RP11-81E15 from 7, complet... 46 0.57 1
(AC068254) Homo sapiens chromosome 18, clone RP11-543H23, co... 46 0.57 1
(AC025287) Homo sapiens chromosome 16 clone RP11-490B18, com... 46 0.57 1
(AC025226) Homo sapiens BAC clone RP11-57J19 from Y, complet... 46 0.57 1
(AC018693) Homo sapiens BAC clone RP11-555N21 from 2, comple... 46 0.57 1
(AC015988) Homo sapiens, clone RP11-153F20, complete sequence. 46 0.57 1
(AC011749) Homo sapiens BAC clone RP11-455E3 from Y, complet... 46 0.57 1
(AC010135) Homo sapiens BAC clone RP11-128D13 from Y, comple... 46 0.57 1
(AC008873) Homo sapiens chromosome 5 clone CTD-2199H11, comp... 46 0.57 1
(AC008270) Homo sapiens BAC clone RP11-111G16 from 2, comple... 46 0.57 1
(AC006115) Homo sapiens chromosome 19, BAC CIT-B-470f8 (BC33... 46 0.57 1
(AC005549) Homo sapiens chromosome 17, clone hRPK.215_E_13, ... 46 0.57 1
(AC004527) Homo sapiens chromosome 21, Neurofibromatosis 1 (... 46 0.57 1
(AC162217) Bos taurus clone CH240-111N20, WORKING DRAFT SEQU... 46 0.57 1
(AC161077) Bos taurus clone CH240-77P24, WORKING DRAFT SEQUE... 46 0.57 1
(AC153722) Bos taurus clone CH240-21F4, WORKING DRAFT SEQUEN... 46 0.57 1
(AC143781) Macaca mulatta clone CH250-270O20, WORKING DRAFT ... 46 0.57 1
(AC141952) Rattus norvegicus clone CH230-398F7, WORKING DRAF... 46 0.57 1
(AC141330) Rattus norvegicus clone CH230-281F14, WORKING DRA... 46 0.57 1
(AC137040) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 0.57 1
(AC137018) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 0.57 1
(AC137010) Rattus norvegicus clone CH230-unknown, WORKING DR... 46 0.57 1
(AC136946) Homo sapiens chromosome 16 clone RP11-353B21, WOR... 46 0.57 1
(AC136845) Rattus norvegicus clone CH230-375C10, *** SEQUENC... 46 0.57 1
(AC136678) Rattus norvegicus clone CH230-16I19, WORKING DRAF... 46 0.57 1
(AC134162) Rattus norvegicus clone CH230-103B9, *** SEQUENCI... 46 0.57 1
(AC133820) Rattus norvegicus clone CH230-91C18, *** SEQUENCI... 46 0.57 1
(AC133246) Rattus norvegicus clone CH230-7G20, *** SEQUENCIN... 46 0.57 1
(AC132978) Rattus norvegicus clone CH230-14H14, *** SEQUENCI... 46 0.57 1
(AC131868) Rattus norvegicus clone CH230-106F22, WORKING DRA... 46 0.57 1
(AC129815) Rattus norvegicus clone CH230-526N11, WORKING DRA... 46 0.57 1
(AC126724) Rattus norvegicus clone CH230-3K3, WORKING DRAFT ... 46 0.57 1
(AC126660) Rattus norvegicus clone CH230-198I6, WORKING DRAF... 46 0.57 1
(AC126196) Rattus norvegicus clone CH230-71A16, WORKING DRAF... 46 0.57 1
(AC123505) Rattus norvegicus clone CH230-397J3, *** SEQUENCI... 46 0.57 1
(AC123454) Rattus norvegicus clone CH230-79J7, WORKING DRAFT... 46 0.57 1
(AC120010) Mus musculus chromosome 6 clone RP24-201I11 map 6... 46 0.57 1
(AC118181) Rattus norvegicus clone CH230-490P1, WORKING DRAF... 46 0.57 1
(AC118097) Rattus norvegicus clone CH230-185H22, *** SEQUENC... 46 0.57 1
(AC117851) Rattus norvegicus clone CH230-227B19, *** SEQUENC... 46 0.57 1
(AC117120) Rattus norvegicus clone CH230-159J1, *** SEQUENCI... 46 0.57 1
(AC116297) Rattus norvegicus clone CH230-79C17, *** SEQUENCI... 46 0.57 1
(AC114379) Rattus norvegicus clone CH230-85N23, *** SEQUENCI... 46 0.57 1
(AC113926) Rattus norvegicus clone CH230-29D24, WORKING DRAF... 46 0.57 1
(AC113699) Rattus norvegicus clone CH230-122C12, *** SEQUENC... 46 0.57 1
(AC111310) Rattus norvegicus clone CH230-235J24, *** SEQUENC... 46 0.57 1
(AC109437) Rattus norvegicus clone CH230-50K18, *** SEQUENCI... 46 0.57 1
(AC109405) Rattus norvegicus clone CH230-265G13, *** SEQUENC... 46 0.57 1
(AC109093) Rattus norvegicus clone CH230-218F14, *** SEQUENC... 46 0.57 1
(AC103926) Mus musculus clone RP23-54C6, LOW-PASS SEQUENCE S... 46 0.57 1
(AC103714) Homo sapiens chromosome 8 clone RP11-262E8 map 8,... 46 0.57 1
(AC103238) Rattus norvegicus clone CH230-9M5, *** SEQUENCING... 46 0.57 1
(AC101667) Mus musculus clone RP23-66K16, WORKING DRAFT SEQU... 46 0.57 1
(AC099233) Rattus norvegicus clone CH230-201I8, WORKING DRAF... 46 0.57 1
(AC098342) Rattus norvegicus clone CH230-2A2, *** SEQUENCING... 46 0.57 1
(AC098333) Rattus norvegicus clone CH230-2B2, *** SEQUENCING... 46 0.57 1
(AC096300) Rattus norvegicus clone CH230-36L12, WORKING DRAF... 46 0.57 1
(AC096079) Rattus norvegicus clone CH230-33I23, *** SEQUENCI... 46 0.57 1
(AC095672) Rattus norvegicus clone CH230-8P2, WORKING DRAFT ... 46 0.57 1
(AC095652) Rattus norvegicus clone CH230-8E3, WORKING DRAFT ... 46 0.57 1
(AC094831) Rattus norvegicus clone CH230-3H20, *** SEQUENCIN... 46 0.57 1
(FP236391) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP102935) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP102914) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP102587) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP102288) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP101984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP090900) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP085551) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(FP016080) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU929952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU929478) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU928889) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU928390) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU914447) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU914224) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU856646) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU856060) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU695064) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU683886) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU682348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU655994) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU655853) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU633909) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 0.57 1
(CU606969) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU582888) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU576526) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU571138) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU570929) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(AC094340) Rattus norvegicus clone CH230-3J16, WORKING DRAFT... 46 0.57 1
(AC094222) Rattus norvegicus clone CH230-2P16, WORKING DRAFT... 46 0.57 1
(AC093465) Mus musculus clone RP23-256C1, WORKING DRAFT SEQU... 46 0.57 1
(AC091314) Mus musculus clone RP23-57B2, WORKING DRAFT SEQUE... 46 0.57 1
(CU469043) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU468981) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU468938) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU468614) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU468447) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU468085) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU467989) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU467769) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU467503) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU464189) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU463143) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU407256) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU326370) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU137739) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CU137694) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CT954259) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.57 1
(CT583674) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.57 1
(BX649329) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 0.57 1
(AP001491) Homo sapiens genomic DNA, chromosome 18q21 clone:... 46 0.57 1
(AL590070) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 0.57 1
(AL358192) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 0.57 1
(AC222883) Bos taurus clone CH240-435J15, WORKING DRAFT SEQU... 46 0.57 1
(AC222158) Bos taurus clone CH240-410O14, WORKING DRAFT SEQU... 46 0.57 1
(AC219821) Bos taurus clone CH240-320N16, WORKING DRAFT SEQU... 46 0.57 1
(AC217487) Canis lupus familiaris clone XX-161J14, *** SEQUE... 46 0.57 1
(AC216519) Sus scrofa clone RP44-81O16, WORKING DRAFT SEQUEN... 46 0.57 1
(AC205213) Colobus guereza clone CH272-186J12, WORKING DRAFT... 46 0.57 1
(AC203691) Myotis lucifugus clone CH235-477P20, WORKING DRAF... 46 0.57 1
(AC191196) Colobus guereza clone CH272-267F14, WORKING DRAFT... 46 0.57 1
(AC187945) Colobus guereza clone CH272-105I17, WORKING DRAFT... 46 0.57 1
(AC174754) Bos taurus clone CH240-90B5, WORKING DRAFT SEQUEN... 46 0.57 1
(AC168403) Strongylocentrotus purpuratus clone R3-4002H14, W... 46 0.57 1
(AC166792) Mus musculus chromosome 1 clone RP23-340D1 map 1,... 46 0.57 1
(AC164796) Bos taurus clone CH240-157K3, WORKING DRAFT SEQUE... 46 0.57 1
(AC022711) Homo sapiens chromosome 18 clone RP11-103K1 map 1... 46 0.57 1
(AC019039) Homo sapiens chromosome 18 clone RP11-390D24 map ... 46 0.57 1
(AC011934) Homo sapiens clone RP11-16C11, WORKING DRAFT SEQU... 46 0.57 1
(AC009620) Homo sapiens chromosome 4 clone RP11-431N21 map 4... 46 0.57 1
(AK045700) Mus musculus adult male corpora quadrigemina cDNA... 46 0.57 1
(BH401157) AG-ND-102H18.TF ND-TAM Anopheles gambiae genomic ... 46 0.57 1
(BH101081) RPCI-24-363I15.TV RPCI-24 Mus musculus genomic cl... 46 0.57 1
(AZ337786) 1M0068A10R Mouse 10kb plasmid UUGC1M library Mus ... 46 0.57 1
(AQ406878) HS_5092_B1_F12_SP6E RPCI-11 Human Male BAC Librar... 46 0.57 1
(AL736092) Danio rerio genomic clone DKEY-15I6, genomic surv... 46 0.57 1
(EI024572) bb60b07.r Dekkera bruxellensis Random Genomic Lib... 46 0.57 1
(EI017763) bb12g02.f Dekkera bruxellensis Random Genomic Lib... 46 0.57 1
(DH582439) Rattus norvegicus DNA, BAC clone: RNB1-101O01, 3'... 46 0.57 1
(CT355608) Sus scrofa genomic clone CH242-382I8, genomic sur... 46 0.57 1
(CT319832) Sus scrofa genomic clone CH242-320J13, genomic su... 46 0.57 1
(CT251425) Sus scrofa genomic clone CH242-166L11, genomic su... 46 0.57 1
(CR188137) Reverse strand read from insert in 5'HPRT inserti... 46 0.57 1
(CR165389) Reverse strand read from insert in 5'HPRT inserti... 46 0.57 1
(CL762715) OR_BBa0132P13.f OR_BBa Oryza nivara genomic clone... 46 0.57 1
(CE389202) tigr-gss-dog-17000334441032 Dog Library Canis lup... 46 0.57 1
(CE294426) tigr-gss-dog-17000333889963 Dog Library Canis lup... 46 0.57 1
(CC120358) NDL.81H15.T7 Notre Dame Liverpool Aedes aegypti g... 46 0.57 1
(BZ184876) CH230-423H12.TV CHORI-230 Segment 2 Rattus norveg... 46 0.57 1
(BX980036) Reverse strand read from insert in 5'HPRT inserti... 46 0.57 1
(BX977253) Reverse strand read from insert in 5'HPRT inserti... 46 0.57 1
(AG441648) Mus musculus molossinus DNA, clone:MSMg01-323C08.... 46 0.57 1
(AG247436) Lotus japonicus DNA, clone:LjT20p17_not. 46 0.57 1
(EB617889) AGENCOURT_54967133 D. mojavensis EST Drosophila m... 46 0.57 1
(EB308562) CNSN01-F-070225-501 Normalized CNS library (juven... 46 0.57 1
(EB282426) CNSN01-F-001720-501 Normalized CNS library (juven... 46 0.57 1
(EB260738) CNSN01-C-004414-501 Normalized CNS library (juven... 46 0.57 1
(EB258744) CNSN01-C-009059-501 Normalized CNS library (juven... 46 0.57 1
(EB245802) PEG003-C-228422-501 Normalized Pedal-Pleural Gang... 46 0.57 1
(EB244056) PEG003-C-221437-501 Normalized Pedal-Pleural Gang... 46 0.57 1
(EB240287) PEG003-C-226487-501 Normalized Pedal-Pleural Gang... 46 0.57 1
(EB236730) PEG003-C-211948-501 Normalized Pedal-Pleural Gang... 46 0.57 1
(EB233656) PEG003-C-203434-501 Normalized Pedal-Pleural Gang... 46 0.57 1
(EB210066) PEG002-C-002921-501 Normalized Pedal-Pleural Gang... 46 0.57 1
(DY336454) OB_SEa04B14.f OB_SEa Ocimum basilicum cDNA clone ... 46 0.57 1
(DN800015) G.hir-cold stressed seedling 201 3 week old cold ... 46 0.57 1
(DB741561) Apis mellifera head cDNA, RIKEN full-length enric... 46 0.57 1
(DB729201) Apis mellifera head cDNA, RIKEN full-length enric... 46 0.57 1
(AM875854) Venerupis (Ruditapes) philippinarum EST, 5' end s... 46 0.57 1
(CX115598) EI099N02 A normalized whole-life-cycle cDNA libra... 46 0.57 1
(CA766778) AF53-Rpf_12_M05_T7_023.ab1 IRRI Drought Stress Pa... 46 0.57 1
(CA070730) SCUTAD1033E11.g AD1 Saccharum officinarum cDNA cl... 46 0.57 1
(BU947060) rf18a02.y1 Meloidogyne hapla J2 SL1 TOPO v1 Meloi... 46 0.57 1
(BM634735) 17000687555443 A.Gam.ad.cDNA1 Anopheles gambiae c... 46 0.57 1
(BM628845) 17000687499209 A.Gam.ad.cDNA1 Anopheles gambiae c... 46 0.57 1
(BF915806) IL3-UT0114-081200-366-H09 UT0114 Homo sapiens cDN... 46 0.57 1
(BB644225) Mus musculus adult male corpora quadrigemina cDNA... 46 0.57 1
(GD212589) G1045P388RM2.T1 Aplysia californica Pooled Normal... 46 0.57 1
(GD202380) G1045P373FD15.T1 Aplysia californica Pooled Norma... 46 0.57 1
(FD589521) susfleck_PG_47_H05 SUSFLECK Pituitary Gland Sus s... 46 0.57 1
(EX825827) CcLXMa71b14n1 Montse common carp adult head and k... 46 0.57 1
(EW045111) rpigcf0_004924.y1 ctl Sus scrofa cDNA 5', mRNA se... 46 0.57 1
(AL049695) Human DNA sequence from clone RP1-236J16 on chrom... 42 0.75 2
(FP016006) Zebrafish DNA sequence from clone CH73-194H10 in ... 44 0.77 2
(AC205050) Pan troglodytes BAC clone CH251-159L17 from chrom... 44 0.87 3
(AC023672) Homo sapiens BAC clone RP11-499I20 from 2, comple... 42 0.88 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.97 5
(AC078838) Homo sapiens chromosome 3 clone RP11-244B5, WORKI... 44 0.97 3
(CR388405) Zebrafish DNA sequence from clone DKEY-11O1 in li... 40 1.0 3
(CR936835) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 1.0 3
(AL929037) Mouse DNA sequence from clone RP23-297K24 on chro... 42 1.1 2
(AC083801) Homo sapiens 3 BAC RP11-646E18 (Roswell Park Canc... 44 1.1 2
(AU266148) Dictyostelium discoideum vegetative cDNA clone:VS... 38 1.1 2
(AC182465) Pan troglodytes BAC clone CH251-502A24 from chrom... 44 1.1 3
(BX936445) Zebrafish DNA sequence from clone DKEY-50O12 in l... 44 1.1 2
(CR847938) Zebrafish DNA sequence from clone DKEYP-30B3 in l... 44 1.1 2
(CU694297) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.1 2
(AC109981) Rattus norvegicus clone CH230-74L8, *** SEQUENCIN... 32 1.2 2
(CU928684) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.2 2
(AC187616) Pan troglodytes BAC clone CH251-587H13 from chrom... 32 1.2 2
(AC126549) Mus musculus BAC clone RP24-326I12 from chromosom... 32 1.2 2
(AC090138) Homo sapiens, clone RP11-63C8, complete sequence. 32 1.2 2
(AC146199) Pan troglodytes BAC clone RP43-25F11 from chromos... 32 1.2 2
(AC027608) Homo sapiens chromosome 8 clone RP11-63C8, WORKIN... 32 1.2 2
(BS000168) Pan troglodytes chromosome 22 clone:RP43-021P14, ... 34 1.2 2
(AC135529) Rattus norvegicus clone CH230-368D20, WORKING DRA... 32 1.2 2
(AC148305) Mus musculus chromosome 18 clone RP24-99P17 map 1... 32 1.2 2
(CU929754) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.2 2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 1.2 2
(AC198715) Pan troglodytes BAC clone CH251-156G1 from chromo... 44 1.2 3
(AL049175) Human DNA sequence from clone RP5-1110P6 on chrom... 42 1.2 3
(FB880454) Sequence 99727 from Patent WO2008034648. 34 1.3 3
(FB859732) Sequence 79005 from Patent WO2008034648. 34 1.3 3
(FB802421) Sequence 21694 from Patent WO2008034648. 34 1.3 3
(DL173368) Methods for Identifying the Target of a Compound ... 34 1.3 3
(AX488928) Sequence 6228 from Patent WO02053728. 34 1.3 3
(AC091719) Pan troglodytes clone RP43-26K2, complete sequence. 44 1.3 2
(AC008028) Drosophila melanogaster, chromosome 3R, region 98... 38 1.3 2
(AL646098) Mouse DNA sequence from clone RP23-107I24 on chro... 40 1.3 2
(CU928940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.4 3
(AC161974) Bos taurus clone CH240-105K9, WORKING DRAFT SEQUE... 44 1.4 3
(AF102575) Dictyostelium discoideum cell surface protein DTF... 36 1.4 3
(AC188693) Gallus gallus BAC clone CH261-175O22 from chromos... 34 1.4 3
(AC156414) Bos taurus clone CH240-53D21, WORKING DRAFT SEQUE... 44 1.5 3
(DH582518) Rattus norvegicus DNA, BAC clone: RNB1-101P18, 5'... 32 1.6 2
(AC133426) Rattus norvegicus clone CH230-288L12, WORKING DRA... 40 1.6 2
(EF798568) Mus musculus C57BL/6N IST11097F2BBF1 gene trap em... 32 1.6 2
(DH530085) Rattus norvegicus DNA, BAC clone: RNB1-030K05, 5'... 32 1.6 2
(CU928867) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.7 3
(AC004320) Drosophila melanogaster (P1 DS07424 (D214)) DNA s... 42 1.7 2
(EX852969) CBNC9867.fwd CBNC Phycomyces blakesleeanus NRRL15... 36 2.1 2
(EU268351) Hemidactylus brasilianus voucher MZUSP 92493 NADH... 44 2.3 1
(DQ120964) Hucho taimen clone ZB-17 microsatellite sequence. 44 2.3 1
(CU694227) Zebrafish DNA sequence from clone CH73-31D8 in li... 44 2.3 1
(CR927553) Zebrafish DNA sequence from clone DKEY-206P8 in l... 44 2.3 1
(CR855310) Zebrafish DNA sequence from clone CH211-134D5 in ... 44 2.3 1
(BX005335) Zebrafish DNA sequence from clone DKEY-240N8. 44 2.3 1
(AC200449) Gallus gallus BAC clone CH261-174I21 from chromos... 44 2.3 1
(AC197853) Gallus gallus BAC clone CH261-26D19 from chromoso... 44 2.3 1
(AC192554) Gallus gallus BAC clone CH261-112M7 from chromoso... 44 2.3 1
(AC186860) Gallus gallus BAC clone CH261-3A3 from chromosome... 44 2.3 1
(G95644) S208P6680RA8.T0 129S1/SvImJ Mus musculus STS genomi... 44 2.3 1
(G78228) S208P6024RF6.T0 129S1/SvImJ Mus musculus STS genomi... 44 2.3 1
(BV809205) pRRL2:Newb:20080411:187182 USMARC Pig Breed SNP D... 44 2.3 1
(BV682364) GBL030283 Ensembl chicken genome sequences browse... 44 2.3 1
(BV589132) G591P637064FA12.T0 Clint Pan troglodytes verus ST... 44 2.3 1
(BV569997) G591P60857FD3.T0 Clint Pan troglodytes verus STS ... 44 2.3 1
(BV560730) qfj80d05.b1 Clint Pan troglodytes verus STS genom... 44 2.3 1
(BV497273) S217P60962RF12.T0 Noemie Pan troglodytes troglody... 44 2.3 1
(BV493207) S217P6936FA12.T0 Noemie Pan troglodytes troglodyt... 44 2.3 1
(BV469839) G591P608362FC9.T0 Clint Pan troglodytes verus STS... 44 2.3 1
(BV468248) G591P603518RC10.T0 Clint Pan troglodytes verus ST... 44 2.3 1
(BV012851) S208P6019FA10.T0 129S1/SvImJ Mus musculus STS gen... 44 2.3 1
(L33242) Rattus norvegicus fibronectin gene, enhancer. 44 2.3 1
(CT573046) Mouse DNA sequence from clone RP23-101P16 on chro... 44 2.3 1
(CT030255) Mouse DNA sequence from clone RP23-267P22 on chro... 44 2.3 1
(CT025613) Mouse DNA sequence from clone RP23-208M16 on chro... 44 2.3 1
(CT025536) Mouse DNA sequence from clone RP24-97G22 on chrom... 44 2.3 1
(CR974485) Mouse DNA sequence from clone RP23-112H14 on chro... 44 2.3 1
(BX072552) Mouse DNA sequence from clone RP23-147I24 on chro... 44 2.3 1
(AL928663) Mouse DNA sequence from clone RP23-315A20 on chro... 44 2.3 1
(AL845440) Mouse DNA sequence from clone RP23-294B7 on chrom... 44 2.3 1
(AL844579) Mouse DNA sequence from clone RP23-219M22 on chro... 44 2.3 1

>(AU061355) Dictyostelium discoideum slug cDNA, clone SLD822.
Length = 239

Score = 184 bits (93), Expect(2) = 3e-68
Identities = 93/93 (100%)
Strand = Plus / Plus


Query: 1 agcaacagcaacaacaacaaaaacctaatggtcttaaactatcaatatcatcaggttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcaacagcaacaacaacaaaaacctaatggtcttaaactatcaatatcatcaggttcaa 60


Query: 61 ttaaagatttaataaattcaccaaataaagaac 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttaaagatttaataaattcaccaaataaagaac 93

Score = 107 bits (54), Expect(2) = 3e-68
Identities = 54/54 (100%)
Strand = Plus / Plus


Query: 140 tatacccgatatggatactgatgttgatagtactgatgaatttgattttggtag 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tatacccgatatggatactgatgttgatagtactgatgaatttgattttggtag 193

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 197,880,927
Number of extensions: 16695626
Number of successful extensions: 6559322
Number of sequences better than 10.0: 3389
Length of query: 238
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 215
Effective length of database: 99,442,330,388
Effective search space: 21380101033420
Effective search space used: 21380101033420
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U03994-1 (Contig-U03994-1Q) /CSM_Contig/Contig-U03994-1Q.Seq.d
(238 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q70GP4) RecName: Full=Signal transducer and activator of transc... 80 2e-14

>(Q70GP4) RecName: Full=Signal transducer and activator of
transcription B; AltName: Full=STAT5 homolog B; AltName:
Full=Dd-STATb; &AJ581661_1(AJ581661|pid:none)
Length = 1148

Score = 80.1 bits (196), Expect = 2e-14
Identities = 41/57 (71%), Positives = 41/57 (71%)
Frame = +3

Query: 21 KPNGLKLSISSGSIKDLINSPNKEXXXXXXXXXXXXXXXXIPDMDTDVDSTDEFDFG 191
KPNGLKLSISSGSIKDLINSPNKE IPDMDTDVDSTDEFDFG
Sbjct: 518 KPNGLKLSISSGSIKDLINSPNKEQSSKSQYPSSLSQSSSIPDMDTDVDSTDEFDFG 574

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 111,551,549
Number of extensions: 823855
Number of successful extensions: 1093
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 1
Length of query: 79
Length of database: 1,061,185,681
Length adjustment: 50
Effective length of query: 29
Effective length of database: 897,763,281
Effective search space: 26035135149
Effective search space used: 26035135149
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT

psg: 0.72 gvh: 0.31 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U03994-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0