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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U00877-1
Contig ID Contig-U00877-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U00877-1 (Contig-U00877-1Q) /CSM_Contig/Contig-U00877-1Q.Seq.d
ACTGTTGGCCTACTGGNACAACACCTTCATCCCAAGTTAATCGAGTTGGA
AATAACGGTCAAGTTATTGAAGTTATTTCATCACCGTCTCCTCCAAAGGG
ATGGAAAGCAGCCATCGACATTATCAAATTCAACGACAACTACAGCCACA
TCATCATCATCATCATCAACGACATTATCGACGACTACAACTACTACCAC
AACAGCAAATGCTACAAATAATTCGGCTGCCAGTATTTCCAATAATAGTA
ATACTAACAATGGAAATGGAAATGGTAGTAGTAATAGCAATAGT------
----GCAACAGACAATACAGCAGCAACAACAACAACAACTTCACCATCAC
GTCTACTACATCACCAACAACAACGACAACAACAACAGCACCAGTTGAAC
AACAACAACAACAACAACAACAACAATATCAACCTTCAGATAGTGGATTC
AGAGGTAGAGGTAGAGGTGGATTTAGAGGTCGTGGTAGAGGTAGAGGTGG
ATTTAGAGGTCGTGGAAGAGGTAGAGGTGGATTTAGAGGTCGTGGAAGAG
GTAGAGGTGGATTTAGAGGTGGTTCACCATTAAATAGTAATTATCAAGAA
TCAGAATCATCTTCATCAACAACCAATACAACAAATACTGCAACTACATC
AGCAACAAATAATTCACCAAATCCAACAACAATAACAACAACAGAAGGTA
ATGATTTATAGACCAAGAAGAGGTAGAGGTGGATTTAGAGGTAGAGGTGG
ATTCAGAGGTCGTGGTGGAAATAGATCATCAAGTAATTCTCCTTCATCAT
CTCCAAATCCAACAACAACAACTACAACATCAACAACTTCTCCTACTCCA
AAATAAAAAATAAAAAAAA
Gap gap included
Contig length 859
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4428417
End point 4429168
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U00877
List of clone(s) 

est1=SFA364F,1,295
est2=VSC861Z,296,861
est3=SFA364Z,447,819
Translated Amino Acid sequence 
TVGLLXQHLHPKLIELEITVKLLKLFHHRLLQRDGKQPSTLSNSTTTTATSSSSSSTTLS
TTTTTTTTANATNNSAASISNNSNTNNGNGNGSSNSNS---

---NRQYSSNNNNNFTITSTTSPTTTTTTTAPVEQQQQQQQQQYQPSDSGFRGRGRGGFR
GRGRGRGGFRGRGRGRGGFRGRGRGRGGFRGGSPLNSNYQESESSSSTTNTTNTATTSAT
NNSPNPTTITTTEGNDL*tkkr*rwi*r*rwiqrswwk*iik*fsfiisksnnnnyninn
fsyskiknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLXQHLHPKLIELEITVKLLKLFHHRLLQRDGKQPSTLSNSTTTTATSSSSSSTTLS
TTTTTTTTANATNNSAASISNNSNTNNGNGNGSSNSNS---

---atdntaatttttspsrllhhqqqrqqqqhqlnnnnnnnnnninlqivdsevevevdl
evvvevevdlevveevevdlevveevevdlevvhh*iviiknqnhlhqqpiqqilqlhqq
qiihqiqqq*qqqkvmiyrprrgrggfrgrggfrgrggnrsssnspssspnpttttttst
tsptpk*kikk

Frame B:
llaywxntfips*sswk*rssy*syfitvsskgmesshrhyqiqrqlqphhhhhhqrhyr
rlqllpqqqmlqiirlpvfpiiviltmememvvviai---

---qqtiqqqqqqqlhhhvyyitnnndnnnsts*tttttttttistfr*wiqr*r*rwi*
rsw*r*rwi*rswkr*rwi*rswkr*rwi*rwftik**lsririifinnqynkycnyisn
k*ftksnnnnnnrr**fidqeevevdlevevdsevvveidhqvillhhlqiqqqqlqhqq
llllqnkk*kk

Frame C:
cwptgttpssqvnrvgnngqvievisspsppkgwkaaidiikfndnyshiiiiiindiid
dynyyhnskcyk*fgcqyfq***y*qwkwkw****q*---

---NRQYSSNNNNNFTITSTTSPTTTTTTTAPVEQQQQQQQQQYQPSDSGFRGRGRGGFR
GRGRGRGGFRGRGRGRGGFRGRGRGRGGFRGGSPLNSNYQESESSSSTTNTTNTATTSAT
NNSPNPTTITTTEGNDL*tkkr*rwi*r*rwiqrswwk*iik*fsfiisksnnnnyninn
fsyskiknkk
own update 2004. 6.21
Homology vs CSM-cDNA 
Query= Contig-U00877-1 (Contig-U00877-1Q)
/CSM_Contig/Contig-U00877-1Q.Seq.d
         (869 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00877-1 (Contig-U00877-1Q) /CSM_Contig/Conti...   593  e-169
Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U08275-1 (Contig-U08275-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U15575-1 (Contig-U15575-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U06807-1 (Contig-U06807-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U06358-1 (Contig-U06358-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U16326-1 (Contig-U16326-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U16150-1 (Contig-U16150-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U15898-1 (Contig-U15898-1Q) /CSM_Contig/Conti...    40  0.006

>Contig-U00877-1 (Contig-U00877-1Q) /CSM_Contig/Contig-U00877-1Q.Seq.d
          Length = 869

 Score =  593 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Plus

                                                                       
Query: 511 cgtggaagaggtagaggtggatttagaggtcgtggaagaggtagaggtggatttagaggt 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cgtggaagaggtagaggtggatttagaggtcgtggaagaggtagaggtggatttagaggt 570

                                                                       
Query: 571 ggttcaccattaaatagtaattatcaagaatcagaatcatcttcatcaacaaccaataca 630
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggttcaccattaaatagtaattatcaagaatcagaatcatcttcatcaacaaccaataca 630

                                                                       
Query: 631 acaaatactgcaactacatcagcaacaaataattcaccaaatccaacaacaataacaaca 690
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acaaatactgcaactacatcagcaacaaataattcaccaaatccaacaacaataacaaca 690

                                                                       
Query: 691 acagaaggtaatgatttatagaccaagaagaggtagaggtggatttagaggtagaggtgg 750
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acagaaggtaatgatttatagaccaagaagaggtagaggtggatttagaggtagaggtgg 750

                                                                      
Query: 751 attcagaggtcgtggtggaaatagatcatcaagtaattctccttcatcatctccaaatc 809
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 attcagaggtcgtggtggaaatagatcatcaagtaattctccttcatcatctccaaatc 809


 Score =  287 bits (145), Expect = 1e-77
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttggcctactggnacaacaccttcatcccaagttaatcgagttggaaataacggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   actgttggcctactggnacaacaccttcatcccaagttaatcgagttggaaataacggtc 60

                                                                       
Query: 61  aagttattgaagttatttcatcaccgtctcctccaaagggatggaaagcagccatcgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagttattgaagttatttcatcaccgtctcctccaaagggatggaaagcagccatcgaca 120

                                       
Query: 121 ttatcaaattcaacgacaactacagcca 148
           ||||||||||||||||||||||||||||
Sbjct: 121 ttatcaaattcaacgacaactacagcca 148


 Score =  250 bits (126), Expect = 3e-66
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 169 acgacattatcgacgactacaactactaccacaacagcaaatgctacaaataattcggct 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 acgacattatcgacgactacaactactaccacaacagcaaatgctacaaataattcggct 228

                                                                       
Query: 229 gccagtatttccaataatagtaatactaacaatggaaatggaaatggtagtagtaatagc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gccagtatttccaataatagtaatactaacaatggaaatggaaatggtagtagtaatagc 288

                 
Query: 289 aatagt 294
           ||||||
Sbjct: 289 aatagt 294


 Score =  111 bits (56), Expect = 2e-24
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                       
Query: 511 cgtggaagaggtagaggtggatttagaggtcgtggaagaggtagaggtggatttagaggt 570
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgtggtagaggtagaggtggatttagaggtcgtggaagaggtagaggtggatttagaggt 540


 Score = 99.6 bits (50), Expect = 7e-21
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                 
Query: 517 agaggtagaggtggatttagaggtcgtggaagaggtagaggtggatttagaggt 570
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 457 agaggtagaggtggatttagaggtcgtggtagaggtagaggtggatttagaggt 510


 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 736 tagaggtagaggtggattcagaggtcgtggt 766
           |||||||||||||||||| ||||||||||||
Sbjct: 456 tagaggtagaggtggatttagaggtcgtggt 486


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 736 tagaggtagaggtggattcagaggtcgtgg 765
           |||||||||||||||||| |||||||||||
Sbjct: 486 tagaggtagaggtggatttagaggtcgtgg 515


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 719 agaggtagaggtggatttagaggt 742
           ||||||||||||||||||||||||
Sbjct: 457 agaggtagaggtggatttagaggt 480


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 719 agaggtagaggtggatttagaggt 742
           ||||||||||||||||||||||||
Sbjct: 487 agaggtagaggtggatttagaggt 510


 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 427 tatcaaccttcagatagtggatt 449
           |||||||||||||||||||||||
Sbjct: 427 tatcaaccttcagatagtggatt 449


 Score = 38.2 bits (19), Expect = 0.022
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 667 ccaaatccaacaacaataacaacaaca 693
           |||||||||||||||| ||| ||||||
Sbjct: 803 ccaaatccaacaacaacaactacaaca 829


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 729 gtggatttagaggtagaggt 748
           ||||||| ||||||||||||
Sbjct: 443 gtggattcagaggtagaggt 462


>Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Contig-U13909-1Q.Seq.d
          Length = 2788

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 668  caaatccaacaacaataacaacaaca 693
            ||||||||||||||| ||||||||||
Sbjct: 1085 caaatccaacaacaacaacaacaaca 1110


 Score = 38.2 bits (19), Expect = 0.022
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 668 caaatccaacaacaataacaacaacag 694
           ||||| ||||||||| |||||||||||
Sbjct: 563 caaatacaacaacaacaacaacaacag 589


 Score = 34.2 bits (17), Expect = 0.34
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 673 ccaacaacaataacaacaaca 693
           ||||||||||| |||||||||
Sbjct: 232 ccaacaacaattacaacaaca 252


>Contig-U08275-1 (Contig-U08275-1Q) /CSM_Contig/Contig-U08275-1Q.Seq.d
          Length = 508

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 668 caaatccaacaacaataacaacaaca 693
           ||||||||||||||| ||||||||||
Sbjct: 53  caaatccaacaacaacaacaacaaca 78


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,260
Number of Sequences: 8402
Number of extensions: 13260
Number of successful extensions: 3295
Number of sequences better than 10.0: 1035
length of query: 869
length of database: 8,075,542
effective HSP length: 16
effective length of query: 853
effective length of database: 7,941,110
effective search space: 6773766830
effective search space used: 6773766830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.19
Homology vs DNA 
Query= Contig-U00877-1 (Contig-U00877-1Q) /CSM_Contig/Contig-U00877-1Q.Seq.d
         (869 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ387332) Dictyostelium discoideum cDNA clone:dds1p15, 5' e...   287   e-142  2
(AU262844) Dictyostelium discoideum vegetative cDNA clone:VS...   232   e-122  5
(BJ398706) Dictyostelium discoideum cDNA clone:dds1p15, 3' e...   232   e-111  2
(EL502636) D04_PFLAB1-L-PLATE4B.AB1 Blood stage Plasmodium f...    36   3e-07  5
(CZ801337) OC__Ba0172O06.f OC__Ba Oryza coarctata genomic cl...    42   3e-06  2
(CZ758213) OC__Ba0110M02.f OC__Ba Oryza coarctata genomic cl...    42   3e-06  2
(AB023429) Candida boidinii gene for RNA-binding protein, co...    52   4e-06  3
(EC820090) SME00000696 esmbsro2 Sawyeria marylandensis cDNA,...    46   8e-06  3
(EC820427) SME00002919 esmbsro2 Sawyeria marylandensis cDNA,...    46   9e-06  3
(EC820693) SME00003227 esmbsro2 Sawyeria marylandensis cDNA,...    46   9e-06  3
(EC821161) SME00001102 esmbsro2 Sawyeria marylandensis cDNA,...    46   1e-05  3
(AL441032) T3 end of clone BD0AA016D04 of library BD0AA from...    62   1e-05  2
(EC823992) SME00002027 esmbsro2 Sawyeria marylandensis cDNA,...    46   2e-05  3
(EC823872) SME00003719 esmbsro2 Sawyeria marylandensis cDNA,...    46   2e-05  3
(EC823568) SME00001916 esmbsro2 Sawyeria marylandensis cDNA,...    46   2e-05  3
(EC824807) SME00002915 esmbsro2 Sawyeria marylandensis cDNA,...    46   2e-05  3
(EC826009) SME00001194 esmbsro2 Sawyeria marylandensis cDNA,...    46   2e-05  3
(AR554345) Sequence 9476 from patent US 6747137.                   50   3e-05  3
(BI815893) PfESToaa33h10.y1 Plasmodium falciparum 3D7 asexua...    36   4e-05  4
(BQ597093) PfESToab34f03.y1 Plasmodium falciparum 3D7 asexua...    36   4e-05  4
(BQ451689) PfESToab07f04.y1 Plasmodium falciparum 3D7 asexua...    36   4e-05  4
(BU495322) PfESToab71e01.y1 Plasmodium falciparum 3D7 asexua...    36   5e-05  5
(BI814462) PfESToaa22h12.y1 Plasmodium falciparum 3D7 asexua...    36   8e-05  4
(FC614291) CAXS7074.fwd CAXS Lottia gigantea from head, foot...    50   1e-04  2
(FC634810) CAXT9445.fwd CAXT Lottia gigantea from mantle Lot...    50   1e-04  2
(FC634129) CAXT9079.fwd CAXT Lottia gigantea from mantle Lot...    50   1e-04  2
(FC614036) CAXS6937.fwd CAXS Lottia gigantea from head, foot...    50   1e-04  2
(FC740545) CBBI11902.fwd CBBI Lottia gigantea 26h,37h,61h La...    50   1e-04  2
(AR550414) Sequence 5545 from patent US 6747137.                   50   1e-04  3
(FC686848) CAXX19101.fwd CAXX Lottia gigantea from male gona...    50   1e-04  2
(FC791169) CBGC20813.fwd CBGC Lottia gigantea 15h 18h embryo...    50   1e-04  2
(FC779859) CBGC12083.fwd CBGC Lottia gigantea 15h 18h embryo...    50   1e-04  2
(FC732372) CBBG7226.rev CBBG Lottia gigantea 12,15,18h embry...    50   1e-04  2
(FC710801) CAXY6545.rev CAXY Lottia gigantea from male gonad...    50   1e-04  2
(FC676883) CAXX11607.fwd CAXX Lottia gigantea from male gona...    50   1e-04  2
(FC727633) CBBG4295.fwd CBBG Lottia gigantea 12,15,18h embry...    50   1e-04  2
(FC788945) CBGC19402.fwd CBGC Lottia gigantea 15h 18h embryo...    50   1e-04  2
(FC727433) CBBG4169.fwd CBBG Lottia gigantea 12,15,18h embry...    50   1e-04  2
(FC632326) CAXT8120.fwd CAXT Lottia gigantea from mantle Lot...    50   1e-04  2
(FC632709) CAXT8320.fwd CAXT Lottia gigantea from mantle Lot...    50   1e-04  2
(FC783939) CBGC14657.fwd CBGC Lottia gigantea 15h 18h embryo...    50   1e-04  2
(EC822681) SME00009429 esmbsro2 Sawyeria marylandensis cDNA,...    50   5e-04  2
(EK445364) 1095467027451 Global-Ocean-Sampling_GS-32-01-01-1...    44   5e-04  2
(BX878546) AGENAE Rainbow trout multi-tissues-normalized + 2...    46   6e-04  2
(BX877715) AGENAE Rainbow trout multi-tissues-normalized + 2...    46   6e-04  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.002  2
(FC618407) CAXS9400.fwd CAXS Lottia gigantea from head, foot...    46   0.002  2
(ET364479) S0134A24_T7 CHORI-214 Salmo salar genomic clone S...    46   0.003  3
(FC677836) CAXX12181.fwd CAXX Lottia gigantea from male gona...    44   0.007  2
(DR090755) RTAL1_17_D11.b1_A029 Roots plus added aluminum Pi...    48   0.007  2
(DR916719) EST1108258 Aquilegia cDNA library Aquilegia formo...    42   0.008  2
(DT748004) EST1181853 Aquilegia cDNA library Aquilegia formo...    42   0.008  2
(CJ996012) Saccharomyces pastorianus mRNA, clone: C012-29, 5...    38   0.008  2
(DT764303) EST1198152 Aquilegia cDNA library Aquilegia formo...    42   0.009  2
(FE861057) CAFY959.rev CAFY Pichia stipitis oxygen limited x...    38   0.009  4
(FE861058) CAFY959.fwd CAFY Pichia stipitis oxygen limited x...    38   0.010  4
(FE860161) CAFY487.rev CAFY Pichia stipitis oxygen limited x...    38   0.014  4
(EY347959) CAWZ16237.fwd CAWZ Helobdella robusta Primary Lat...    42   0.015  3
(FE860162) CAFY487.fwd CAFY Pichia stipitis oxygen limited x...    38   0.017  4
(EY362662) CAWZ8363.fwd CAWZ Helobdella robusta Primary Late...    42   0.017  3
(CX968409) JGI_CAAP2949.fwd NIH_XGC_tropInt1 Xenopus (Silura...    40   0.017  3
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    40   0.021  2
(AC122970) Rattus norvegicus clone CH230-281K21, *** SEQUENC...    36   0.023  2
(AC111366) Rattus norvegicus clone CH230-84H11, WORKING DRAF...    36   0.023  2
(EC822268) SME00005577 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.024  2
(EC823720) SME00002132 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.027  2
(EC824903) SME00005170 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.027  2
(EC823852) SME00000137 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.027  2
(DT766277) EST1200126 Aquilegia cDNA library Aquilegia formo...    40   0.029  2
(FC631442) CAXT7661.rev CAXT Lottia gigantea from mantle Lot...    44   0.031  2
(AB018223) Candida boidinii gene for acetylspermidine oxidas...    52   0.036  1
(EL499949) 003_PFLAB1-S-PLATE13B.AB1 Blood stage Plasmodium ...    36   0.053  3
(AC027654) Mus musculus strain C57BL6/J chromosome 6 clone R...    36   0.086  2
(AC158663) Mus musculus  BAC RP23-16J8 (Roswell Park Cancer ...    36   0.086  2
(AC198921) Monosiga brevicollis clone MonoB-5B15, complete s...    48   0.087  2
(DL173393) Methods for Identifying the Target of a Compound ...    38   0.088  2
(AX488953) Sequence 6253 from Patent WO02053728.                   38   0.088  2
(AZ586468) 1M0392I20F Mouse 10kb plasmid UUGC1M library Mus ...    28   0.10   4
(DB852668) Nilaparvata lugens mRNA, EST clone:NLNA1293, 5' e...    50   0.14   1
(FC664713) CAXW3979.rev CAXW Lottia gigantea from female gon...    50   0.14   1
(FC644072) CAXU6951.rev CAXU Lottia gigantea from female gon...    50   0.14   1
(EY789852) CR05-C3-700-115-C08-CT.F Mandarin fruit, developm...    50   0.14   1
(EC820316) SME00005887 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.26   2
(CK886739) SGP148622 Atlantic salmon Kidney cDNA library Sal...    32   0.28   4
(AC125663) Rattus norvegicus clone CH230-104E2, WORKING DRAF...    34   0.32   2
(AC177997) Strongylocentrotus purpuratus clone R3-3052B12, W...    34   0.33   2
(AC176944) Strongylocentrotus purpuratus clone R3-1103O18, W...    34   0.33   2
(BJ415438) Dictyostelium discoideum cDNA clone:ddv22g16, 5' ...    40   0.33   2
(EC823092) SME00004459 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.34   2
(Z81592) Caenorhabditis elegans Cosmid T16G1.                      36   0.35   2
(AR557937) Sequence 13068 from patent US 6747137.                  36   0.35   3
(BJ327501) Dictyostelium discoideum cDNA clone:dda20n13, 5' ...    34   0.37   3
(EY345586) CAWZ14088.fwd CAWZ Helobdella robusta Primary Lat...    42   0.38   2
(FE268809) CAZO833.rev CAZO Naegleria gruberi Flagellate Sta...    36   0.41   2
(FE250400) CAPH2828.rev CAPH Naegleria gruberi amoeba stage ...    36   0.41   2
(FD398006) 1106514251058 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD392918) 1106162223266 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD406399) 1106514658878 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD396466) 1106514211090 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD396553) 1106514214354 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD392522) 1106162220386 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD406886) 1106514672897 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD397924) 1106514250479 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD399484) 1106514295935 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD393561) 1106162227870 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD411959) 1106514827704 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD407821) 1106514693025 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD397395) 1106514230871 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD414477) 1106540247761 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD393123) 1106162226105 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD401993) 1106514386189 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD393834) 1106162242251 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD398729) 1106514284607 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD393026) 1106162224749 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD388059) 1106121091739 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD404219) 1106514429748 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD389810) 1106121096963 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD406517) 1106514669582 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD396823) 1106514220515 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD388234) 1106121092168 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD389338) 1106121094746 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD388445) 1106121092607 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD388002) 1106121047191 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD404130) 1106514427344 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD415100) 1106614237606 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD405637) 1106514464352 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD395306) 1106162311140 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD390360) 1106162214021 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD411282) 1106514814308 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD397432) 1106514230916 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD403452) 1106514414084 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD414607) 1106540248783 Cryptosporidium muris (strain RN66)...    38   0.41   2
(FD391439) 1106162216649 Cryptosporidium muris (strain RN66)...    38   0.41   2
(EE265048) E12_E12sg2g23_pDNRf_521479 Myzus persicae, tobacc...    38   0.42   2
(FE245325) CAPG8811.rev CAPG Naegleria gruberi amoeba stage ...    36   0.42   2
(FE250401) CAPH2828.fwd CAPH Naegleria gruberi amoeba stage ...    36   0.42   2
(CJ993990) Saccharomyces pastorianus mRNA, clone: B032-92, 5...    34   0.42   2
(CB397445) OSTR189C6_1 AD-wrmcDNA Caenorhabditis elegans cDN...    36   0.42   2
(AG314105) Mus musculus molossinus DNA, clone:MSMg01-097M01....    36   0.43   2
(ET841132) CHO_OF920xc17f1.ab1 CHO_OF Nicotiana tabacum geno...    34   0.44   2
(BJ326689) Dictyostelium discoideum cDNA clone:dda17k16, 5' ...    34   0.45   3
(EY361272) CAWZ7635.fwd CAWZ Helobdella robusta Primary Late...    42   0.46   2
(AC167565) Mus musculus BAC clone RP24-84D8 from chromosome ...    36   0.46   3
(EY373913) CAXA14805.rev CAXA Helobdella robusta Subtracted ...    42   0.48   2
(EY349693) CAWZ17191.fwd CAWZ Helobdella robusta Primary Lat...    42   0.48   2
(EY354007) CAWZ2822.fwd CAWZ Helobdella robusta Primary Late...    42   0.48   2
(AM436690) Vitis vinifera contig VV79X002585.3, whole genome...    48   0.57   1
(DX447209) BE2003_P10_F IASMA L2 HindIII BAC library Vitis v...    48   0.57   1
(DH489232) Monosiga ovata DNA, fosmid clone: MOF-048G10, gen...    48   0.57   1
(DT626270) EST1158194 Sequencing ESTs from loblolly pine emb...    48   0.57   1
(DT594536) wmi03-7ms3-g03 Wmi03 Welwitschia mirabilis cDNA c...    48   0.57   1
(CV137885) EST849094 Sequencing ESTs from loblolly pine embr...    48   0.57   1
(GE356643) 292267780 Nasonia vitripennis Male Pupae Nasonia ...    48   0.57   1
(EV358608) G771P570RA3.T0 Culex pipiens quinquefasciatus Mix...    48   0.57   1
(AM053488) Epidinium ecaudatum EST, clone Eec02_F10.               32   0.65   4
(BJ379535) Dictyostelium discoideum cDNA clone:ddc35m02, 3' ...    34   0.66   3
(AK133572) Mus musculus adult male pituitary gland cDNA, RIK...    36   0.95   2
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    36   0.98   2
(EF802509) Mus musculus C57BL/6N IST11160A8HMF1 gene trap em...    34   0.99   2
(AB018543) Dictyostelium discoideum mkpA gene, complete cds.       32   0.99   5
(EE665305) 28834_fb223 R. filosa cDNA library Reticulomyxa f...    44   1.0    2
(AL844507) Plasmodium falciparum chromosome 8.                     36   1.0    2
(AR549571) Sequence 4702 from patent US 6747137.                   36   1.1    3
(BD309263) Drug targets in Candida albicans.                       34   1.2    3
(CR407597) Zebrafish DNA sequence from clone DKEY-40C23 in l...    34   1.2    2
(BX927093) Zebrafish DNA sequence from clone DKEY-53P2 in li...    34   1.2    2
(AR550417) Sequence 5548 from patent US 6747137.                   34   1.3    3
(BV162301) RPAMMSEQ0032766 Roche Palo Alto Mus musculus STS ...    38   1.3    2
(AK164338) Mus musculus 12 days embryo spinal ganglion cDNA,...    36   1.4    2
(AC164292) Mus musculus BAC clone RP24-177C20 from chromosom...    36   1.4    3
(BJ394020) Dictyostelium discoideum cDNA clone:dds33b16, 5' ...    36   1.5    3
(AL407529) T3 end of clone AV0AA001H01 of library AV0AA from...    32   1.5    2
(FD738267) WS03943.C21_P02 SS-B-24 Picea sitchensis cDNA clo...    34   1.5    2
(EX318804) GQ02813.SP6_G23 GQ028 - Cambium / phloem scrappin...    34   1.5    2
(FE860055) CAFY431.rev CAFY Pichia stipitis oxygen limited x...    36   1.5    2
(FE856927) CAFU892.rev CAFU Pichia stipitis oxygen limited d...    36   1.5    2
(GE764680) MUW02-L12.x1d-t SHGC-MUW Mytilus californianus cD...    36   1.5    2
(ES873633) WS02841.CR_L16 SS-IB-A-FL-13 Picea sitchensis cDN...    34   1.5    2
(GH606819) G1297P556FK3.T0 C. parvum KSU-1 normalized sporoz...    36   1.5    2
(EX316698) GQ02810.SP6_D03 GQ028 - Cambium / phloem scrappin...    34   1.5    2
(EX318475) GQ02813.B7_G23 GQ028 - Cambium / phloem scrapping...    34   1.5    2
(DN200103) USDA-FP_138167 Citrus root weevil whole body adul...    44   1.6    2
(BJ364231) Dictyostelium discoideum cDNA clone:ddc30m23, 5' ...    40   1.6    2
(DR542681) WS01039.B21_G07 SS-R-N-A-11 Picea sitchensis cDNA...    34   1.6    2
(EK465111) 1095469418262 Global-Ocean-Sampling_GS-32-01-01-1...    36   1.9    3
(CK886224) SGP166637 Atlantic salmon Intestine cDNA library ...    32   2.2    3
(CR925789) Zebrafish DNA sequence from clone DKEY-47M9 in li...    46   2.2    1
(AL672013) Mouse DNA sequence from clone RP23-32G8 on chromo...    46   2.2    1
(AM479526) Vitis vinifera contig VV78X237899.9, whole genome...    46   2.2    1
(AF238380) Homo sapiens chromosome X multiple clones map p11...    46   2.2    1
(AF235098) Homo sapiens chromosome X multiple clones map p11...    46   2.2    1
(AC231644) Homo sapiens BAC clone RP11-439E16 from chromosom...    46   2.2    1
(AG501855) Mus musculus molossinus DNA, clone:MSMg01-402M15....    46   2.2    1
(AG326707) Mus musculus molossinus DNA, clone:MSMg01-114P05....    46   2.2    1
(DV445121) CV01015A1D09.f1 CV01-normalized library Manihot e...    46   2.2    1
(DN307391) PL05013B2E02 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN302011) PL04024A2G07 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN301813) PL04023B2B08 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN301031) PL04021A2A04 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN300875) PL04020B2A06 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN300833) PL04020B1E03 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN300571) PL04019B2A09 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN300003) PL04017B2G05 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN299114) PL04015A1A07 cDNA from sexually mature hermaphodi...    46   2.2    1
(DN298612) PL04013A2E10 cDNA from sexually mature hermaphodi...    46   2.2    1
(DB863397) Lipochromis sp. 'matumbi hunter' cDNA clone:hm765...    46   2.2    1
(CV705203) UCRPT01_0006I11_f Poncirus trifoliata CTV-challen...    46   2.2    1
(BX879801) AGENAE Rainbow trout multi-tissues-normalized + 2...    46   2.2    1
(BX876418) AGENAE Rainbow trout multi-tissues-normalized + 2...    46   2.2    1
(BQ263676) fz92f11.y1 Sugano SJD adult male Danio rerio cDNA...    46   2.2    1
(FG685605) G1143P329FK16.T0 Anolis carolinensis pooled norma...    46   2.2    1
(FG648191) G1142P37FG20.T0 Anolis carolinensis pooled normal...    46   2.2    1
(EY835703) PT11-C2-301-027-H11-CT.F Poncirus trifoliata bark...    46   2.2    1
(EY785967) CR05-C3-700-074-D06-CT.F Mandarin fruit, developm...    46   2.2    1
(AZ486458) 1M0314C03R Mouse 10kb plasmid UUGC1M library Mus ...    28   2.3    4
(CR398449) Arabidopsis thaliana T-DNA flanking sequence GK-7...    38   2.5    2
(EH896274) EBENXNS01BDZRA 8-day Arabidopsis seedlings, aeria...    38   2.9    2
(AC124431) Mus musculus BAC clone RP24-243J21 from chromosom...    36   3.1    3
(AC161761) Mus musculus BAC clone RP23-379E17 from chromosom...    36   3.1    4
(AB239700) Coeloplana willeyi mRNA for Six-B1, partial cds.        40   3.1    2
(AZ507418) 1M0349J01F Mouse 10kb plasmid UUGC1M library Mus ...    28   3.5    4
(DB906492) Populus nigra mRNA, clone: PnFL2-077_J23, 3'end.        42   3.7    2
(AC099267) Rattus norvegicus clone CH230-223L3, *** SEQUENCI...    32   4.2    2
(AC115119) Mus musculus BAC clone RP23-87M19 from 18, comple...    40   4.2    2
(AM437833) Vitis vinifera, whole genome shotgun sequence, co...    42   4.5    2
(BJ389004) Dictyostelium discoideum cDNA clone:dds17g06, 5' ...    38   4.5    2
(AC122867) Mus musculus BAC clone RP23-146P6 from 8, complet...    36   4.6    3
(BJ363473) Dictyostelium discoideum cDNA clone:ddc26i19, 5' ...    40   4.7    2
(BV099710) RPAMMSEQ0017162 Roche Palo Alto Mus musculus STS ...    36   4.9    2
(AW263766) xp10e05.x1 NCI_CGAP_HN9 Homo sapiens cDNA clone I...    26   5.1    4
(CR933367) RNA-binding protein involved in epigenetic progra...    34   5.3    2
(CT745725) Paramecium tetraurelia 5-PRIME EST from clone LK0...    34   5.7    2
(FE855738) CAFU1027.fwd CAFU Pichia stipitis oxygen limited ...    34   5.7    2
(FE846674) CAFI859.fwd CAFI Pichia stipitis aerobic dextrose...    34   5.7    2
(CT797025) Paramecium tetraurelia 5-PRIME EST from clone LK0...    34   5.7    2
(FE852115) CAFP2074.fwd CAFP Pichia stipitis aerobic xylose ...    34   5.7    2
(FE860056) CAFY431.fwd CAFY Pichia stipitis oxygen limited x...    34   5.7    2
(FE860475) CAFY652.fwd CAFY Pichia stipitis oxygen limited x...    34   5.7    2
(FE855724) CAFU1019.fwd CAFU Pichia stipitis oxygen limited ...    34   5.7    2
(FE852330) CAFP2187.fwd CAFP Pichia stipitis aerobic xylose ...    34   5.7    2
(FE855723) CAFU1019.rev CAFU Pichia stipitis oxygen limited ...    34   5.7    2
(FE860064) CAFY435.fwd CAFY Pichia stipitis oxygen limited x...    34   5.7    2
(FE856928) CAFU892.fwd CAFU Pichia stipitis oxygen limited d...    34   5.7    2
(FE855959) CAFU1146.fwd CAFU Pichia stipitis oxygen limited ...    34   5.7    2
(FE855737) CAFU1027.rev CAFU Pichia stipitis oxygen limited ...    34   5.7    2
(FE851304) CAFP1646.fwd CAFP Pichia stipitis aerobic xylose ...    34   5.7    2
(GH603611) G1297P546FD16.T0 C. parvum KSU-1 normalized sporo...    34   5.7    2
(FE845777) CAFI1150.fwd CAFI Pichia stipitis aerobic dextros...    34   5.7    2
(FE846890) CAFI972.fwd CAFI Pichia stipitis aerobic dextrose...    34   5.8    2
(EB808360) 3490_H19 Botrytis cinerea expressed sequence tags...    32   5.8    2
(DB589960) Halocynthia roretzi cDNA clone:ma336l06, 5' end.        34   5.8    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    40   6.0    6
(GD169751) OXAX-aaa28f06.g1 Oxytricha_pSMART_OXAX Sterkiella...    32   6.0    3
(CX968408) JGI_CAAP2949.rev NIH_XGC_tropInt1 Xenopus (Silura...    40   6.1    2
(FE848898) CAFO1763.fwd CAFO Pichia stipitis aerobic xylose ...    38   6.3    2
(FE850408) CAFP1160.fwd CAFP Pichia stipitis aerobic xylose ...    38   6.3    2
(FE851683) CAFP1847.fwd CAFP Pichia stipitis aerobic xylose ...    38   6.6    2
(BB178017) Mus musculus adult male hypothalamus cDNA, RIKEN ...    36   6.9    2
(CT030662) Mouse DNA sequence from clone RP23-89J7 on chromo...    42   7.0    3
(FE254950) CAPH5322.fwd CAPH Naegleria gruberi amoeba stage ...    32   7.1    3
(CT653290) Danio rerio EST, clone ZF_mu_4l19 5'.                   32   7.4    3
(EG566196) AGENCOURT_88150650 NIH_ZGC_26 Danio rerio cDNA cl...    32   7.8    3
(CT653325) Danio rerio EST, clone ZF_mu_5g21 5'.                   32   8.0    3
(AL606905) Mouse DNA sequence from clone RP23-394K13 on chro...    36   8.3    3
(CT655057) Danio rerio EST, clone ZF_mu_6f06 5'.                   32   8.4    3
(CT027574) Zebrafish DNA sequence from clone DKEY-93K8 in li...    44   8.9    1
(CR354555) Zebrafish DNA sequence from clone CH211-65I12 in ...    44   8.9    1
(BX470131) Zebrafish DNA sequence from clone CH211-175M2 in ...    44   8.9    1
(CR974592) Mouse DNA sequence from clone RP23-56C15 on chrom...    44   8.9    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    44   8.9    1
(CR382135) Debaryomyces hansenii strain CBS767 chromosome C ...    44   8.9    1
(AB087677) Nicotiana tabacum NNF1 mRNA for tobacco nucleolin...    44   8.9    1
(AY751536) Schistocerca gregaria Sparc (Sparc) mRNA, complet...    44   8.9    1
(AC137405) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    44   8.9    1
(AC110444) Rattus norvegicus clone CH230-332N11, WORKING DRA...    44   8.9    1
(AC191258) Zea mays chromosome 6 clone CH201-447A13; ZMMBBc0...    44   8.9    1
(FI012738) CHO_OF6913xh22r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   8.9    1
(FH208735) CHO_OF3166xi18f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.9    1
(AL419258) T3 end of clone AX0AA038A10 of library AX0AA from...    44   8.9    1
(DH464435) Monosiga ovata DNA, fosmid clone: MOF-005B13, gen...    44   8.9    1
(CC002020) PUGJX93TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   8.9    1
(BZ303831) KD2614.q1 Kluyveromyces delphensis Random Genomic...    44   8.9    1
(BZ299731) KD0317.p1 Kluyveromyces delphensis Random Genomic...    44   8.9    1
(EH664629) 12.2H01 Transformed tobacco Lambda Zap II library...    44   8.9    1
(EE665443) 29900_re358 R. filosa cDNA library Reticulomyxa f...    44   8.9    1
(EE664877) 33412_re1366 R. filosa cDNA library Reticulomyxa ...    44   8.9    1
(EC691841) JLE00002388 Jakoba libera Company (STANDARD) Jako...    44   8.9    1
(EC689298) JLE00002995 Jakoba libera Company (STANDARD) Jako...    44   8.9    1
(DV152238) CV03088A2F03.f1 CV03-normalized library Euphorbia...    44   8.9    1
(DN921540) 38259.2 Cold Sweetening B Solanum tuberosum cDNA ...    44   8.9    1
(AM864089) Crassostrea gigas EST, 5' end sequence, clone cdn...    44   8.9    1
(CV493747) 38259.1 Cold Sweetening B Solanum tuberosum cDNA ...    44   8.9    1
(CK298503) EST761217 Nicotiana benthamiana mixed tissue cDNA...    44   8.9    1
(CK297032) EST759746 Nicotiana benthamiana mixed tissue cDNA...    44   8.9    1
(CI176647) Oryza sativa Japonica Group cDNA, clone: 034-M025...    44   8.9    1
(BJ336874) Dictyostelium discoideum cDNA clone:dda55p09, 5' ...    44   8.9    1
(BG096073) EST460592 potato leaves and petioles Solanum tube...    44   8.9    1
(BG096069) EST460588 potato leaves and petioles Solanum tube...    44   8.9    1
(AW973615) EST385715 MAGE resequences, MAGM Homo sapiens cDN...    44   8.9    1
(FG175012) AGN_RNC123xh04f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   8.9    1
(FG171856) AGN_RNC129xb02f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   8.9    1
(FG152279) AGN_RNC108xo10f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   8.9    1
(FG151781) AGN_RNC109xm08f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   8.9    1
(FG149239) AGN_RNC116xn14f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   8.9    1
(FG144103) AGN_RPC017xn10f1.ab1 AGN_RPC Nicotiana tabacum cD...    44   8.9    1
(FE263637) CAZO3378.fwd CAZO Naegleria gruberi Flagellate St...    44   8.9    1
(FE261674) CAZO2153.fwd CAZO Naegleria gruberi Flagellate St...    44   8.9    1
(FE261673) CAZO2153.rev CAZO Naegleria gruberi Flagellate St...    44   8.9    1
(FE242987) CAPG7428.fwd CAPG Naegleria gruberi amoeba stage ...    44   8.9    1
(FC663747) CAXW3429.rev CAXW Lottia gigantea from female gon...    44   8.9    1
(CA471799) AGENCOURT_10659090 NCI_CGAP_ZKid1 Danio rerio cDN...    32   9.7    3

>(BJ387332) Dictyostelium discoideum cDNA clone:dds1p15, 5' end,
           single read.
          Length = 295

 Score =  287 bits (145), Expect(2) = e-142
 Identities = 148/148 (100%)
 Strand = Plus / Plus


Query: 1   actgttggcctactggnacaacaccttcatcccaagttaatcgagttggaaataacggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   actgttggcctactggnacaacaccttcatcccaagttaatcgagttggaaataacggtc 60


Query: 61  aagttattgaagttatttcatcaccgtctcctccaaagggatggaaagcagccatcgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagttattgaagttatttcatcaccgtctcctccaaagggatggaaagcagccatcgaca 120


Query: 121 ttatcaaattcaacgacaactacagcca 148
           ||||||||||||||||||||||||||||
Sbjct: 121 ttatcaaattcaacgacaactacagcca 148

 Score =  250 bits (126), Expect(2) = e-142
 Identities = 126/126 (100%)
 Strand = Plus / Plus


Query: 169 acgacattatcgacgactacaactactaccacaacagcaaatgctacaaataattcggct 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 acgacattatcgacgactacaactactaccacaacagcaaatgctacaaataattcggct 228


Query: 229 gccagtatttccaataatagtaatactaacaatggaaatggaaatggtagtagtaatagc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gccagtatttccaataatagtaatactaacaatggaaatggaaatggtagtagtaatagc 288


Query: 289 aatagt 294
           ||||||
Sbjct: 289 aatagt 294

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 554,201,588
Number of extensions: 32414038
Number of successful extensions: 2912632
Number of sequences better than 10.0: 313
Length of query: 869
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 845
Effective length of database: 99,340,224,878
Effective search space: 83942490021910
Effective search space used: 83942490021910
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U00877-1 (Contig-U00877-1Q) /CSM_Contig/Contig-U00877-1Q.Seq.d
         (869 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 427,502,206
Number of extensions: 4241266
Number of successful extensions: 9207
Number of sequences better than 10.0: 0
Number of HSP's gapped: 9206
Number of HSP's successfully gapped: 0
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.80  gvh: 0.46  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U00877-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0