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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03961-1
Contig ID Contig-U03961-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03961-1 (Contig-U03961-1Q) /CSM_Contig/Contig-U03961-1Q.Seq.d
AGAAGAAGAAGTAAAACAAACACAAGAAGAAACTACAACTGTTACAGAAT
CAGTTGTGGTCACTGAAACTGTTATTACTGAAGAAGAGAAAAATGAAACT
ACTATTACTACTGCTACTACCACTACCACCACTACCGAACAACCAACTAT
TGAACAACAACAACAAGAAGAGGAAGAATCAAGACCAGTTATTGAATCTG
AACCAATTGTTGTTGTTGAAGCAACTGAACAACCAACAGTTGAAGAAGAA
TCCGATGAAGAAGATAAAAAAGAAACTAATGAAAATGATAAATCATCATC
CAATGATAATAATAATAATAATAACGATAAACAAGAAGAACAAAAAGAAC
AAACAAATGGTAAAAATGAAAAAGATGAAGA
Gap no gap
Contig length 381
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5466355
End point 5466736
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U03961
List of clone(s) 

est1=SLD460E,1,382
est2=SLD525E,1,382
Translated Amino Acid sequence 
EEEVKQTQEETTTVTESVVVTETVITEEEKNETTITTATTTTTTTEQPTIEQQQQEEEES
RPVIESEPIVVVEATEQPTVEEESDEEDKKETNENDKSSSNDNNNNNNDKQEEQKEQTNG
KNEKDE
Translated Amino Acid sequence (All Frames) 
Frame A:
rrrsktntrrnyncyriscgh*ncyy*rrek*nyyyycyyhyhhyrttny*ttttrrgri
ktsy*i*tnccc*sn*ttns*rrir*rr*krn**k**iiiq*******r*trrtkrtnkw
*k*kr*r


Frame B:
EEEVKQTQEETTTVTESVVVTETVITEEEKNETTITTATTTTTTTEQPTIEQQQQEEEES
RPVIESEPIVVVEATEQPTVEEESDEEDKKETNENDKSSSNDNNNNNNDKQEEQKEQTNG
KNEKDE


Frame C:
kkk*nkhkkklqllqnqlwslkllllkkrkmklllllllplpplpnnqllnnnnkkrknq
dqllnlnqllllkqlnnqqlkknpmkkikkklmkminhhpmiiiiiitinkknkknkqmv
kmkkmk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03961-1 (Contig-U03961-1Q)
/CSM_Contig/Contig-U03961-1Q.Seq.d
         (381 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03961-1 (Contig-U03961-1Q) /CSM_Contig/Conti...   605  e-173
Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti...    54  1e-07
Contig-U09633-1 (Contig-U09633-1Q) /CSM_Contig/Conti...    52  4e-07
Contig-U13964-1 (Contig-U13964-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U11465-1 (Contig-U11465-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U12502-1 (Contig-U12502-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...    44  1e-04

>Contig-U03961-1 (Contig-U03961-1Q) /CSM_Contig/Contig-U03961-1Q.Seq.d
          Length = 381

 Score =  605 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagaagaagtaaaacaaacacaagaagaaactacaactgttacagaatcagttgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaagaagaagtaaaacaaacacaagaagaaactacaactgttacagaatcagttgtggt 60

                                                                       
Query: 61  cactgaaactgttattactgaagaagagaaaaatgaaactactattactactgctactac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cactgaaactgttattactgaagaagagaaaaatgaaactactattactactgctactac 120

                                                                       
Query: 121 cactaccaccactaccgaacaaccaactattgaacaacaacaacaagaagaggaagaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cactaccaccactaccgaacaaccaactattgaacaacaacaacaagaagaggaagaatc 180

                                                                       
Query: 181 aagaccagttattgaatctgaaccaattgttgttgttgaagcaactgaacaaccaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaccagttattgaatctgaaccaattgttgttgttgaagcaactgaacaaccaacagt 240

                                                                       
Query: 241 tgaagaagaatccgatgaagaagataaaaaagaaactaatgaaaatgataaatcatcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaagaagaatccgatgaagaagataaaaaagaaactaatgaaaatgataaatcatcatc 300

                
Query: 301 caatg 305
           |||||
Sbjct: 301 caatg 305


>Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
          Length = 2635

 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 101  actattactactgctactaccactaccaccactac 135
            |||| |||||||| |||||||||||||||||||||
Sbjct: 1112 actactactactgatactaccactaccaccactac 1146


 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 153  aacaacaacaacaag 167
            |||||||||||||||
Sbjct: 2013 aacaacaacaacaag 2027


 Score = 28.2 bits (14), Expect = 6.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 153  aacaacaacaacaa 166
            ||||||||||||||
Sbjct: 2010 aacaacaacaacaa 2023


>Contig-U09633-1 (Contig-U09633-1Q) /CSM_Contig/Contig-U09633-1Q.Seq.d
          Length = 1097

 Score = 52.0 bits (26), Expect = 4e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 264 ataaaaaagaaactaatgaaaatgataaat 293
           |||||||||||| |||||||||||||||||
Sbjct: 214 ataaaaaagaaattaatgaaaatgataaat 243


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,671
Number of Sequences: 6905
Number of extensions: 21671
Number of successful extensions: 6806
Number of sequences better than 10.0: 1273
length of query: 381
length of database: 5,674,871
effective HSP length: 16
effective length of query: 365
effective length of database: 5,564,391
effective search space: 2031002715
effective search space used: 2031002715
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6. 9
Homology vs DNA 
Query= Contig-U03961-1 (Contig-U03961-1Q) /CSM_Contig/Contig-U03961-1Q.Seq.d
         (381 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052519) Dictyostelium discoideum slug cDNA, clone SLD460.      252   e-114  2
(AU052561) Dictyostelium discoideum slug cDNA, clone SLD525.      252   8e-63  1
(AU061199) Dictyostelium discoideum slug cDNA, clone SLD525.      153   6e-33  1
(AC181624) Strongylocentrotus purpuratus clone R3-1105J9, WO...    46   0.007  3
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    46   0.016  4
(AV411375) Lotus japonicus cDNA clone:MWM205f03_r, 5' end.         46   0.045  2
(AC213412) Populus trichocarpa clone POP011-O19, complete se...    50   0.061  1
(DY662488) SS_MF_11_E12 SS_MF Senecio squalidus subsp. squal...    50   0.061  1
(BQ104488) gg0310.e Rose Petals (Golden Gate) Lambda Zap Exp...    50   0.061  1
(AC179487) Strongylocentrotus purpuratus clone R3-64B18, WOR...    48   0.24   1
(AC177679) Strongylocentrotus purpuratus clone R3-1017D3, WO...    48   0.24   1
(FI501837) AHT1B5RGH007-J20TV AHT1BS-Rearray Arachis hypogae...    48   0.24   1
(FI501203) AHT1B5RGH006-F16TP AHT1BS-Rearray Arachis hypogae...    48   0.24   1
(DE928684) Macropus eugenii DNA, BAC clone: MEB1-118K17_F, 5...    48   0.24   1
(EE272140) PMAO-aac91c10.g1 Lamprey_EST_Embryo Petromyzon ma...    48   0.24   1
(DT732576) EST1166426 Aquilegia cDNA library Aquilegia formo...    48   0.24   1
(CI998360) Marsupenaeus japonicus cDNA, clone:YAQ01A02NGRM00...    48   0.24   1
(BU550453) GM880017B20E05 Gm-r1088 Glycine max cDNA clone Gm...    48   0.24   1
(AI441077) sa64a11.y1 Gm-c1004 Glycine max cDNA clone GENOME...    48   0.24   1
(BI702138) sag42e12.y1 Gm-c1081 Glycine max cDNA clone GENOM...    48   0.24   1
(BG352438) sac05d09.y1 Gm-c1040 Glycine max cDNA clone GENOM...    48   0.24   1
(BE822480) GM700017B10A4 Gm-r1070 Glycine max cDNA clone Gm-...    48   0.24   1
(BE821164) GM700014B10F10 Gm-r1070 Glycine max cDNA clone Gm...    48   0.24   1
(N36139) yy29b03.s1 Soares melanocyte 2NbHM Homo sapiens cDN...    48   0.24   1
(FK285205) 454GmaGlobSeed19837 Soybean Seeds Containing Glob...    48   0.24   1
(FK021096) GLNDR12TR JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    48   0.24   1
(FK021095) GLNDR12TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    48   0.24   1
(AW781962) sl98g11.y1 Gm-c1027 Glycine max cDNA clone GENOME...    48   0.24   1
(AW706285) sj54d11.y1 Gm-c1033 Glycine max cDNA clone GENOME...    48   0.24   1
(AW349699) GM210005B21C4 Gm-r1021 Glycine max cDNA clone Gm-...    48   0.24   1
(EV276022) GLMCO51TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    48   0.24   1
(EV273937) GLMC102TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    48   0.24   1
(EV272674) GLMBM76TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    48   0.24   1
(EV263824) GLLAB28TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    48   0.24   1
(AW277616) sf84d09.y1 Gm-c1019 Glycine max cDNA clone GENOME...    48   0.24   1
(AW133262) se16e04.y1 Gm-c1013 Glycine max cDNA clone GENOME...    48   0.24   1
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       48   0.24   1
(EJ203559) 1092344319034 Global-Ocean-Sampling_GS-27-01-01-1...    36   0.34   2
(ER358586) 1092351335291 Global-Ocean-Sampling_GS-34-01-01-1...    36   0.35   2
(EJ993637) 1093023069710 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.35   2
(ET832071) CHO_OF808xg03r1.ab1 CHO_OF Nicotiana tabacum geno...    44   0.36   2
(EJ977016) 1093022126735 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.36   2
(ER284954) 1092343554661 Global-Ocean-Sampling_GS-34-01-01-1...    36   0.38   2
(AC168825) Strongylocentrotus purpuratus clone R3-13E17, WOR...    46   0.38   3
(AF020282) Dictyostelium discoideum DG2033 gene, partial cds.      40   0.40   2
(AR554685) Sequence 9816 from patent US 6747137.                   44   0.51   2
(AC100550) Mus musculus chromosome 9, clone RP23-152P11, com...    36   0.52   2
(AC159702) Trypanosoma brucei chromosome 7 clone RPCI93-30D1...    36   0.52   2
(AC159412) Trypanosoma brucei chromosome 7 clone RPCI93-21H1...    36   0.53   2
(AU038064) Dictyostelium discoideum slug cDNA, clone SSH221.       40   0.64   2
(EH089270) PMEA613TR Perkinsus marinus large insert cDNA lib...    36   0.67   2
(EH086366) PMEB738TR Perkinsus marinus large insert cDNA lib...    36   0.68   2
(AL465498) T. brucei sheared genomic DNA clone 127d05, forwa...    36   0.69   2
(AL456298) T. brucei sheared genomic DNA clone 56h11, forwar...    36   0.69   2
(AQ944092) Sheared DNA-54J5.TF Sheared DNA Trypanosoma bruce...    36   0.69   2
(AU052788) Dictyostelium discoideum slug cDNA, clone SLF102.       40   0.72   2
(DR935891) EST1127430 Aquilegia cDNA library Aquilegia formo...    42   0.93   2
(EI360170) GM_WBc0113E07.r GM_WBc Glycine max genomic clone ...    36   0.94   2
(AP006369) Lotus japonicus genomic DNA, chromosome 4, clone:...    46   0.95   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    46   0.95   1
(AC127072) Rattus norvegicus clone CH230-370B20, *** SEQUENC...    46   0.95   1
(AC112596) Rattus norvegicus clone CH230-45P12, *** SEQUENCI...    46   0.95   1
(AC112073) Rattus norvegicus clone CH230-360I5, *** SEQUENCI...    46   0.95   1
(AC110849) Rattus norvegicus clone CH230-15P4, *** SEQUENCIN...    46   0.95   1
(AC094688) Rattus norvegicus clone CH230-5E15, *** SEQUENCIN...    46   0.95   1
(AC229828) Monodelphis domestica clone VMRC18-57K7, WORKING ...    46   0.95   1
(AC225971) Monodelphis domestica clone VMRC18-403N18, WORKIN...    46   0.95   1
(AC179902) Strongylocentrotus purpuratus clone R3-1003M22, W...    46   0.95   1
(AC178057) Strongylocentrotus purpuratus clone R3-3056G04, W...    46   0.95   1
(AC177620) Strongylocentrotus purpuratus clone R3-1020P15, W...    46   0.95   1
(AC176552) Strongylocentrotus purpuratus clone R3-3076D18, W...    46   0.95   1
(AC176535) Strongylocentrotus purpuratus clone R3-3075L03, W...    46   0.95   1
(AC168243) Strongylocentrotus purpuratus clone R3-1001P8, WO...    46   0.95   1
(AZ959862) 2M0227M11R Mouse 10kb plasmid UUGC2M library Mus ...    46   0.95   1
(EI462073) PV_GBa0065P16.r PV_GBa Phaseolus vulgaris genomic...    46   0.95   1
(DX969817) CHORI105-18N15.TV CHORI105.pTARBAC1.3 Trypanosoma...    46   0.95   1
(AG904824) Oryza sativa Indica Group genomic DNA, BAC end se...    46   0.95   1
(AG904296) Oryza sativa Indica Group genomic DNA, BAC end se...    46   0.95   1
(AG855183) Oryza sativa Indica Group genomic DNA, BAC end se...    46   0.95   1
(BH844157) TC3-56A10.TV TC3 Trypanosoma cruzi genomic clone ...    46   0.95   1
(EG603177) EMBRYOF101105J7 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri...    46   0.95   1
(EE474232) BNYS2DCT_UP_010_H11_28FEB2005_081 Brassica napus ...    46   0.95   1
(DT735794) EST1169643 Aquilegia cDNA library Aquilegia formo...    46   0.95   1
(AU060865) Dictyostelium discoideum slug cDNA, clone SLB781.       46   0.95   1
(AM511415) Paracentrotus lividus EST, clone MPMGp1171G1253Q,...    46   0.95   1
(CO867679) Mddb5010j22.y1 Mddb Malus x domestica cDNA clone ...    46   0.95   1
(CN914822) 030115ABNB002055HT (ABNB) Braeburn cultured fruit...    46   0.95   1
(CJ977926) Bursaphelenchus mucronatus cDNA clone: Bm_U1_22D0...    46   0.95   1
(CI706123) Oryza sativa Japonica Group cDNA, clone: J07B5171...    46   0.95   1
(CF094889) QHN19G15.yg.ab1 QH_N sunflower H.argophyllus (dro...    46   0.95   1
(CD907538) G468.107E14F010814 G468 Triticum aestivum cDNA cl...    46   0.95   1
(CA911691) PCSC16497 Scarlet Runner Bean Suspensor Region Tr...    46   0.95   1
(BU026352) QHG15A05.yg.ab1 QH_EFGHJ sunflower RHA280 Heliant...    46   0.95   1
(BQ916628) QHB18I07.yg.ab1 QH_ABCDI sunflower RHA801 Heliant...    46   0.95   1
(BJ416412) Dictyostelium discoideum cDNA clone:ddv26i10, 5' ...    46   0.95   1
(BJ415805) Dictyostelium discoideum cDNA clone:ddv23f19, 5' ...    46   0.95   1
(BJ414589) Dictyostelium discoideum cDNA clone:ddv19a23, 5' ...    46   0.95   1
(BJ414485) Dictyostelium discoideum cDNA clone:ddv19h07, 5' ...    46   0.95   1
(BJ413817) Dictyostelium discoideum cDNA clone:ddv17f04, 5' ...    46   0.95   1
(BJ363163) Dictyostelium discoideum cDNA clone:ddc25k08, 5' ...    46   0.95   1
(BJ358380) Dictyostelium discoideum cDNA clone:ddc1e08, 5' e...    46   0.95   1
(BG109094) 602281476F1 NIH_MGC_86 Homo sapiens cDNA clone IM...    46   0.95   1
(BF225546) uy42e02.x1 NCI_CGAP_Lu30 Mus musculus cDNA clone ...    46   0.95   1
(GD558094) 454PCS0185785 Scarlet Runner Bean globular-stage ...    46   0.95   1
(GD427086) 454PCS0054777 Scarlet Runner Bean globular-stage ...    46   0.95   1
(FM048585) Rattus norvegicus EST, 5'-end sequence, clone etc...    46   0.95   1
(FG933899) UCRVU09_CCNT12779_g1 Cowpea UCR 707 Mixed Tissue ...    46   0.95   1
(FG933898) UCRVU09_CCNT12779_b1 Cowpea UCR 707 Mixed Tissue ...    46   0.95   1
(FG884840) UCRVU07_CCNP16175_g1 Cowpea UCR 779 Mixed Tissue ...    46   0.95   1
(FG884839) UCRVU07_CCNP16175_b1 Cowpea UCR 779 Mixed Tissue ...    46   0.95   1
(FG860026) UCRVU05_CCNN22767_g1 Cowpea IT84S-2049 Mixed Tiss...    46   0.95   1
(FG860025) UCRVU05_CCNN22767_b1 Cowpea IT84S-2049 Mixed Tiss...    46   0.95   1
(FG840824) UCRVU05_CCNN4214_g1 Cowpea IT84S-2049 Mixed Tissu...    46   0.95   1
(FG840823) UCRVU05_CCNN4214_b1 Cowpea IT84S-2049 Mixed Tissu...    46   0.95   1
(FG836171) UCRVU05_CCNN1496_g1 Cowpea IT84S-2049 Mixed Tissu...    46   0.95   1
(FG836170) UCRVU05_CCNN1496_b1 Cowpea IT84S-2049 Mixed Tissu...    46   0.95   1
(FF542664) MOPC686TF MOP Vigna unguiculata cDNA 5', mRNA seq...    46   0.95   1
(FF400364) MOOEW56TF MOO Vigna unguiculata cDNA 5', mRNA seq...    46   0.95   1
(FE614537) CBYX12127.b1 CBYX Panicum virgatum Kanlow callus ...    46   0.95   1
(EY364822) CAWZ9769.fwd CAWZ Helobdella robusta Primary Late...    46   0.95   1
(EY323816) CAWX9213.fwd CAWX Helobdella robusta Primary Earl...    46   0.95   1
(EX951909) IB1_48_B09_A068.b1 Iris brevicaulis EST Library I...    46   0.95   1
(EV277029) GLMCZ77TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    46   0.95   1
(AA433302) TEUF0124 T.cruzi epimastigote non-normalized cDNA...    46   0.95   1
(BJ433393) Dictyostelium discoideum cDNA clone:ddv21o17, 3' ...    40   0.96   2
(AC221361) Bos taurus clone CH240-404K20, WORKING DRAFT SEQU...    34   0.97   4
(BJ340516) Dictyostelium discoideum cDNA clone:dda2p09, 3' e...    40   0.99   2
(DX531534) GH_MBb0023L05r GH_MBb Gossypium hirsutum genomic ...    38   0.99   3
(BJ342264) Dictyostelium discoideum cDNA clone:dda13n04, 3' ...    40   1.0    2
(EB681608) KP1B.105A10F.060116T7 KP1B Nicotiana tabacum cDNA...    34   1.0    2
(EI335144) GM_WBc0076K04.r GM_WBc Glycine max genomic clone ...    36   1.1    2
(BJ398482) Dictyostelium discoideum cDNA clone:dds12i16, 3' ...    40   1.1    2
(EB571872) AGENCOURT_51204774 D. virilis EST Drosophila viri...    38   1.1    2
(BJ342528) Dictyostelium discoideum cDNA clone:dda14o10, 3' ...    40   1.2    2
(EB678557) KG9B.104N24F.060120T7 KG9B Nicotiana tabacum cDNA...    34   1.2    2
(EJ398477) 1093012019037 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.3    2
(EB677587) KG9B.102D03F.051126T7 KG9B Nicotiana tabacum cDNA...    34   1.3    2
(ER503991) 1093015414393 Global-Ocean-Sampling_GS-35-01-01-1...    36   1.4    2
(EJ399440) 1093012026186 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.4    2
(EJ402785) 1093012067045 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.5    2
(AC130877) Rattus norvegicus clone CH230-207M22, WORKING DRA...    32   1.9    2
(AC141664) Apis mellifera clone CH224-54J14, WORKING DRAFT S...    34   1.9    2
(AZ406724) 1M0176N03F Mouse 10kb plasmid UUGC1M library Mus ...    38   2.0    2
(EA683696) Sequence 62575 from patent US 7365185.                  42   2.1    2
(AF024647) Lucilia cuprina gamma-aminobutyric acid receptor ...    32   2.4    2
(FE232690) CAPG1886.rev CAPG Naegleria gruberi amoeba stage ...    34   2.5    2
(AC223837) Bos taurus clone CH240-456N18, WORKING DRAFT SEQU...    32   2.7    5
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    38   2.8    4
(BJ363013) Dictyostelium discoideum cDNA clone:ddc24f18, 5' ...    38   2.8    2
(BJ410153) Dictyostelium discoideum cDNA clone:ddv11n07, 5' ...    38   2.9    2
(BJ325042) Dictyostelium discoideum cDNA clone:dda9l08, 5' e...    38   3.1    2
(BG598539) EST503439 cSTS Solanum tuberosum cDNA clone cSTS2...    38   3.3    2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    40   3.4    6
(BJ387426) Dictyostelium discoideum cDNA clone:dds2c15, 5' e...    38   3.4    2
(BJ390567) Dictyostelium discoideum cDNA clone:dds22l20, 5' ...    38   3.4    2
(BJ358337) Dictyostelium discoideum cDNA clone:ddc1h02, 5' e...    38   3.4    2
(BJ359564) Dictyostelium discoideum cDNA clone:ddc15k08, 5' ...    38   3.4    2
(BJ330011) Dictyostelium discoideum cDNA clone:dda27g04, 5' ...    38   3.5    2
(BJ327830) Dictyostelium discoideum cDNA clone:dda21m21, 5' ...    38   3.6    2
(BJ410767) Dictyostelium discoideum cDNA clone:ddv1c24, 5' e...    38   3.6    2
(CK718104) 18063 Swollen Stolon Solanum tuberosum cDNA, mRNA...    38   3.7    2
(EL503312) G05_PFLAB1-M-PLATE3B.AB1 Blood stage Plasmodium f...    36   3.8    2
(DQ120988) Hucho taimen clone ZB-43 microsatellite sequence.       44   3.8    1
(CU638704) Zebrafish DNA sequence from clone CH1073-329J14 i...    44   3.8    1
(CR589875) Zebrafish DNA sequence from clone DKEY-15K16 in l...    44   3.8    1
(EZ015595) TSA: Acropora millepora SeqIndex20040, mRNA seque...    44   3.8    1
(CT010433) Mouse DNA sequence from clone RP23-239M23 on chro...    44   3.8    1
(AL844500) Mus musculus chromosome 11 region in the Om locus...    44   3.8    1
(AL772367) Mouse DNA sequence from clone RP23-119N4 on chrom...    44   3.8    1
(AL603745) Mouse DNA sequence from clone RP23-392I13 on chro...    44   3.8    1
(AL593846) Mouse DNA sequence from clone RP23-171H16 on chro...    44   3.8    1
(AC161208) Mus musculus chromosome 5, clone RP23-71M14, comp...    44   3.8    1
(AC159656) Mus musculus 6 BAC RP24-85F2 (Roswell Park Cancer...    44   3.8    1
(AC127789) Rattus norvegicus 1 BAC CH230-15M17 (Children's H...    44   3.8    1
(AC115058) Mus musculus chromosome 5, clone RP24-381E3, comp...    44   3.8    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    44   3.8    1
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    44   3.8    1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    44   3.8    1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    44   3.8    1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    44   3.8    1
(EU338961) Secale cereale clone 581_III-G2 microsatellite se...    44   3.8    1
(D13366) Schizosaccharomyces pombe gpa2 gene for putative G ...    44   3.8    1
(CU329670) Schizosaccharomyces pombe chromosome I.                 44   3.8    1
(AY087830) Arabidopsis thaliana clone 38751 mRNA, complete s...    44   3.8    1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.8    1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.8    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.8    1
(AP004876) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.8    1
(AP004017) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.8    1
(AP002842) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.8    1
(AK108057) Oryza sativa Japonica Group cDNA clone:002-138-A0...    44   3.8    1
(AK067892) Oryza sativa Japonica Group cDNA clone:J013123L02...    44   3.8    1
(AC226041) Musa acuminata clone BAC MA4-4L11, complete seque...    44   3.8    1
(EA704363) Sequence 83242 from patent US 7365185.                  44   3.8    1
(EA621342) Sequence 221 from patent US 7365185.                    44   3.8    1
(EA147938) Sequence 12253 from patent US 7214786.                  44   3.8    1
(AY190952) Drosophila virilis clone DVIF01_45_G15 (D1418) ge...    44   3.8    1
(AM494959) Leishmania braziliensis chromosome 22.                  44   3.8    1
(AC165428) Strongylocentrotus purpuratus BAC clone contig co...    44   3.8    1
(AL445684) Human DNA sequence from clone RP11-45D15 on chrom...    44   3.8    1
(AC159354) Bos taurus clone CH240-61E8, WORKING DRAFT SEQUEN...    44   3.8    1
(AC153832) Mus musculus clone RP23-471G23, WORKING DRAFT SEQ...    44   3.8    1
(AC139050) Mus musculus chromosome 13 clone RP23-203J5 map 1...    44   3.8    1
(AC124241) Homo sapiens chromosome 8 clone CTD-2513H12 map 8...    44   3.8    1
(AC124010) Mus musculus chromosome UNK clone RP23-119N4, WOR...    44   3.8    1
(AC114615) Mus musculus clone RP24-82I19, WORKING DRAFT SEQU...    44   3.8    1
(AC111577) Rattus norvegicus clone CH230-70A4, *** SEQUENCIN...    44   3.8    1
(AC108757) Oryza sativa Japonica Group chromosome 9 clone OS...    44   3.8    1
(AC108444) Mus musculus chromosome 6 clone RP23-387C13 map 6...    44   3.8    1
(AC107599) Rattus norvegicus clone CH230-92G12, *** SEQUENCI...    44   3.8    1
(AC105679) Rattus norvegicus clone CH230-266N24, *** SEQUENC...    44   3.8    1
(AC098103) Rattus norvegicus clone CH230-83A19, *** SEQUENCI...    44   3.8    1
(AC097429) Rattus norvegicus clone CH230-188P5, WORKING DRAF...    44   3.8    1
(AC095779) Rattus norvegicus clone CH230-9E5, *** SEQUENCING...    44   3.8    1
(AC094816) Rattus norvegicus clone CH230-5J4, WORKING DRAFT ...    44   3.8    1
(FP102384) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.8    1
(CU861631) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.8    1
(AC094496) Rattus norvegicus clone CH230-4E1, WORKING DRAFT ...    44   3.8    1
(AC074166) Mus musculus clone RP23-43C19, WORKING DRAFT SEQU...    44   3.8    1
(AY510701) Mus musculus strain 129S6/SvEvTac chromosome 17 c...    44   3.8    1
(AP004056) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.8    1
(AC209824) Zea mays chromosome 6 clone CH201-88J17; ZMMBBc00...    44   3.8    1
(AC207935) Triticum aestivum clone TAACSPALLhA_1057D08, *** ...    44   3.8    1
(AC202172) Zea mays chromosome 1 clone ZMMBBb-318D6; ZMMBBb0...    44   3.8    1
(AC201555) Strongylocentrotus purpuratus clone R3-3118O4, WO...    44   3.8    1
(AC201085) Strongylocentrotus purpuratus clone R3-13E6, WORK...    44   3.8    1
(AC200976) Strongylocentrotus purpuratus clone R3-115J9, WOR...    44   3.8    1
(AC194441) Zea mays chromosome 1 clone CH201-152K2; ZMMBBc01...    44   3.8    1
(AC194399) Zea mays chromosome unknown clone ZMMBBb-633D1; Z...    44   3.8    1
(AC181293) Strongylocentrotus purpuratus clone R3-115J18, WO...    44   3.8    1
(AC180813) Strongylocentrotus purpuratus clone R3-3071M12, W...    44   3.8    1
(AC179552) Strongylocentrotus purpuratus clone R3-6P17, WORK...    44   3.8    1
(AC179534) Strongylocentrotus purpuratus clone R3-1035A8, WO...    44   3.8    1
(AC177606) Strongylocentrotus purpuratus clone R3-14H21, WOR...    44   3.8    1
(AC176008) Strongylocentrotus purpuratus clone R3-17M22, WOR...    44   3.8    1
(AC168806) Strongylocentrotus purpuratus clone R3-13H13, WOR...    44   3.8    1
(AC022230) Mus musculus clone RP23-283N1, *** SEQUENCING IN ...    44   3.8    1
(AK134114) Mus musculus adult male thymus cDNA, RIKEN full-l...    44   3.8    1
(AK085372) Mus musculus 0 day neonate kidney cDNA, RIKEN ful...    44   3.8    1
(FI108842) 82-L103647-1033-091-D22-ccfw IGS-SCF-1033 Bvu-KWS...    44   3.8    1
(FI010720) CHO_OF6906xb11f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   3.8    1
(FH718830) CHO_OF5001xc04f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   3.8    1
(FH091631) CHO_OF3859xf22r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   3.8    1
(ER973715) AF__Bc0075A16r AF__Bc Aquilegia formosa genomic, ...    44   3.8    1
(ER968721) AF__Bc0023N04f AF__Bc Aquilegia formosa genomic, ...    44   3.8    1
(ER210338) 1095524157284 Global-Ocean-Sampling_GS-33-01-01-1...    44   3.8    1
(EK748050) 1093017011573 Global-Ocean-Sampling_GS-33-01-01-1...    44   3.8    1
(EK577958) 1095521371867 Global-Ocean-Sampling_GS-32-01-01-1...    44   3.8    1
(EJ299499) 1095390003596 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.8    1
(EI672711) TAACSP3AShA_0090I01R TAACSP3AShA Triticum aestivu...    44   3.8    1
(DX961202) CHORI105-10N21.TV CHORI105.pTARBAC1.3 Trypanosoma...    44   3.8    1
(DX957799) CHORI105-5J3.TV CHORI105.pTARBAC1.3 Trypanosoma c...    44   3.8    1
(DX946130) CHORI105-37B5.TR CHORI105.pEpiFOS5 Trypanosoma cr...    44   3.8    1
(CT381555) Sus scrofa genomic clone CH242-339K3, genomic sur...    44   3.8    1
(CR093028) Forward strand read from insert in 5'HPRT inserti...    44   3.8    1
(BZ968341) PUGFY57TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   3.8    1
(BZ732260) OGFBL91TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   3.8    1
(BH843817) TC3-55N7.TV TC3 Trypanosoma cruzi genomic clone T...    44   3.8    1
(AG291454) Mus musculus molossinus DNA, clone:MSMg01-066H22....    44   3.8    1
(ES370059) 5-CP713-021G04 Normalized cDNA library of Cryphon...    44   3.8    1
(ES369640) CP713-021G04 Normalized cDNA library of Cryphonec...    44   3.8    1
(EL438152) CHTM13061.b1_I01.ab1 CHT(LMS) Jerusalem artichoke...    44   3.8    1
(EL416341) CHCL4947.b1_F14.ab1 CHC(LMS) Texas blueweed Helia...    44   3.8    1
(EL384068) CFFM21301.b1_J21.ab1 CFF(LMS) safflower Carthamus...    44   3.8    1
(EL374658) CFFM11915.b1_E03.ab1 CFF(LMS) safflower Carthamus...    44   3.8    1
(EH682191) CCIL692.b1_H06.ab1 CCI(LMS) chicory Cichorium int...    44   3.8    1
(EH673403) CCIL11427.b1_F02.ab1 CCI(LMS) chicory Cichorium i...    44   3.8    1
(EH305822) UAHYP_18B_F_E09 UaHyphae_ARS Uromyces appendicula...    44   3.8    1
(EH305821) UAHYP_18B_R_E09 UaHyphae_ARS Uromyces appendicula...    44   3.8    1
(EH087054) PMEBB91TO Perkinsus marinus large insert cDNA lib...    44   3.8    1
(EH084481) PMEAV18TO Perkinsus marinus large insert cDNA lib...    44   3.8    1
(EH061332) PMBA656TH Perkinsus marinus TXsc (S+) cDNA librar...    44   3.8    1
(EE513218) 26RDBNT_UP_035_F09_13FEB2004_069 Brassica napus 2...    44   3.8    1
(EE277154) PMAO-aad14g09.g1 Lamprey_EST_Embryo Petromyzon ma...    44   3.8    1
(EE273415) PMAO-aad14g09.b1 Lamprey_EST_Embryo Petromyzon ma...    44   3.8    1
(EE127512) N56 Peanut (Luhua14) seeds full length cDNA Libra...    44   3.8    1
(EC785766) RAE00014758 Reclinomonas americana Home made, nor...    44   3.8    1
(EC737938) NUE00006430 Capsaspora owczarzaki Amplicon expres...    44   3.8    1
(EB731153) AGENCOURT_77788752 NICHD_XGC_skin_m Xenopus laevi...    44   3.8    1
(EB720749) PMAO-aab78e09.g1 Lamprey_EST_Embryo Petromyzon ma...    44   3.8    1
(EB720748) PMAO-aab78e09.b1 Lamprey_EST_Embryo Petromyzon ma...    44   3.8    1
(EB255316) CNSN01-C-001060-501 Normalized CNS library (juven...    44   3.8    1
(DY941158) CHPX8978.b1_D13.ab1 CHP(XYZ) plains sunflower Hel...    44   3.8    1
(DY907441) CHAX2180.b1_G18.ab1 CHA(XYZ) common wild sunflowe...    44   3.8    1
(DY902970) O6_11 Developing seed from A. thaliana (C24) x A....    44   3.8    1
(DY892042) CeleSEQ8938 Cunninghamella elegans pBluescript (E...    44   3.8    1
(DY887953) CeleSEQ4816 Cunninghamella elegans pBluescript (E...    44   3.8    1
(DW266691) UI-S-GN1-abw-h-19-0-UI.s1 UI-S-GN1 Euprymna scolo...    44   3.8    1
(DV112014) Cm_mx0_76b10_SP6 Green Shore Crab Multiple Tissue...    44   3.8    1
(DV111761) Cm_mx0_73c09_SP6 Green Shore Crab Multiple Tissue...    44   3.8    1
(DT748983) EST1182832 Aquilegia cDNA library Aquilegia formo...    44   3.8    1
(DT738955) EST1172804 Aquilegia cDNA library Aquilegia formo...    44   3.8    1
(DT616365) ACAH-aaa65h04.g1 Hydra_EST_UCI-10 Hydra magnipapi...    44   3.8    1
(DT605269) ACAH-aaa06c10.g1 Hydra_EST_UCI-10 Hydra magnipapi...    44   3.8    1
(DR918855) EST1110394 Aquilegia cDNA library Aquilegia formo...    44   3.8    1
(DR209722) 133509 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209721) 153605 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209720) 145663 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209719) 53487 CERES-148 Arabidopsis thaliana cDNA clone 1...    44   3.8    1
(DR209718) 134854 CERES-149 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209717) 36743 CERES-148 Arabidopsis thaliana cDNA clone 1...    44   3.8    1
(DR209716) 1104025 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209715) 71408 CERES-148 Arabidopsis thaliana cDNA clone 3...    44   3.8    1
(DR209714) 132008 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209713) 958702 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209712) 4498757 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209711) 4501133 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209709) 134439 CERES-149 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209708) 73442 CERES-148 Arabidopsis thaliana cDNA clone 3...    44   3.8    1
(DR209707) 1104438 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209706) 75500 CERES-148 Arabidopsis thaliana cDNA clone 4...    44   3.8    1
(DR209705) 956739 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209704) 72888 CERES-148 Arabidopsis thaliana cDNA clone 3...    44   3.8    1
(DR209703) 4523296 CERES-149 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209702) 151091 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209701) 152691 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209700) 150259 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209699) 159529 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209698) 970660 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209697) 1132009 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209696) 963287 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209695) 1135074 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209694) 968345 CERES-149 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209693) 35442 CERES-148 Arabidopsis thaliana cDNA clone 6...    44   3.8    1
(DR209692) 114399 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209691) 75098 CERES-148 Arabidopsis thaliana cDNA clone 4...    44   3.8    1
(DR209690) 960362 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209689) 159845 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209688) 64710 CERES-148 Arabidopsis thaliana cDNA clone 3...    44   3.8    1
(DR209687) 157233 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209685) 971553 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209684) 56281 CERES-148 Arabidopsis thaliana cDNA clone 2...    44   3.8    1
(DR209683) 72844 CERES-148 Arabidopsis thaliana cDNA clone 3...    44   3.8    1
(DR209682) 1145059 CERES-148 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209681) 5746461 CERES-AL46 Arabidopsis thaliana cDNA clon...    44   3.8    1
(DR209680) 138206 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209679) 970713 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209678) 134784 CERES-149 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DR209677) 4513971 CERES-149 Arabidopsis thaliana cDNA clone...    44   3.8    1
(DR209676) 959778 CERES-148 Arabidopsis thaliana cDNA clone ...    44   3.8    1
(DB704393) Solanum lycopersicum cDNA, clone: LEFL1085BE07, 5...    44   3.8    1
(AM834772) Nicotiana tabacum EST, clone nt005099065.               44   3.8    1
(CX115279) EI098D08 A normalized whole-life-cycle cDNA libra...    44   3.8    1
(AL818132) Triticum aestivum (mercia) clone E03_j223_plate_1...    44   3.8    1
(CJ881982) Triticum aestivum cDNA clone:whthls39c19, 5' end.       44   3.8    1
(CI743853) Oryza sativa Japonica Group cDNA, clone: J09B0043...    44   3.8    1
(CI707425) Oryza sativa Japonica Group cDNA, clone: J07B5178...    44   3.8    1
(CI691016) Oryza sativa Japonica Group cDNA, clone: J07B5097...    44   3.8    1
(CI685831) Oryza sativa Japonica Group cDNA, clone: J07B5073...    44   3.8    1
(CI684044) Oryza sativa Japonica Group cDNA, clone: J07B5065...    44   3.8    1
(CI676930) Oryza sativa Japonica Group cDNA, clone: J07B5030...    44   3.8    1
(CI673602) Oryza sativa Japonica Group cDNA, clone: J07B5014...    44   3.8    1
(CI647130) Oryza sativa Japonica Group cDNA, clone: J06B5086...    44   3.8    1
(CI638672) Oryza sativa Japonica Group cDNA, clone: J06B5040...    44   3.8    1
(CI619021) Oryza sativa Japonica Group cDNA, clone: J03B3114...    44   3.8    1
(CI613082) Oryza sativa Japonica Group cDNA, clone: J03B3071...    44   3.8    1
(CI592343) Oryza sativa Japonica Group cDNA, clone: J02B3054...    44   3.8    1
(CI303607) Oryza sativa Japonica Group cDNA, clone: 012-M001...    44   3.8    1
(AJ568273) Antirrhinum majus EST, clone zscucl82.                  44   3.8    1
(CF889790) TcTR-593 TcTR Trypanosoma cruzi cDNA clone 03i3 5...    44   3.8    1
(CF604383) BACCA01_001749 Grape Berry pSPORT1 Library Vitis ...    44   3.8    1
(CF118211) fs326.z1 fs 103-105d fetal sheep skin library Ovi...    44   3.8    1
(CA717013) wdk4c.pk0002.f1 wdk4c Triticum aestivum cDNA clon...    44   3.8    1
(BX839053) Arabidopsis thaliana Full-length cDNA 5PRIM end o...    44   3.8    1
(BU989003) HF19H03r HF Hordeum vulgare subsp. vulgare cDNA c...    44   3.8    1
(BJ368552) Dictyostelium discoideum cDNA clone:ddc47l06, 5' ...    44   3.8    1
(BI098173) IP1_29_A06.b1_A002 Immature pannicle 1 (IP1) Sorg...    44   3.8    1
(BE134823) ug19d01.y1 Soares_mammary_gland_NMLMG Mus musculu...    44   3.8    1
(GE550121) CCHS8906.b1_C19.ab1 CCHS Espina Barnadesia spinos...    44   3.8    1
(GE544706) CCHS3687.b1_M10.ab1 CCHS Espina Barnadesia spinos...    44   3.8    1
(GE528635) CCHS15517.b1_J15.ab1 CCHS Espina Barnadesia spino...    44   3.8    1
(FL667760) Embrapa_Musa_ABB_Stressed_Cachaco_FL30TF Embrapa_...    44   3.8    1
(FL663327) Embrapa_Musa_ABB_Stressed_Cachaco_E481TF Embrapa_...    44   3.8    1
(FL661539) Embrapa_Musa_ABB_Stressed_Cachaco_DK31TF Embrapa_...    44   3.8    1
(FL659833) Embrapa_Musa_ABB_Stressed_Cachaco_D058TFB Embrapa...    44   3.8    1
(FL659200) Embrapa_Musa_ABB_NonStressed_Cachaco_O886TF Embra...    44   3.8    1
(FL657778) Embrapa_Musa_ABB_NonStressed_Cachaco_NA88TF Embra...    44   3.8    1
(FE492154) CAOT5476.fwd CAOT Selaginella moellendorffii mixe...    44   3.8    1
(FE492153) CAOT5476.rev CAOT Selaginella moellendorffii mixe...    44   3.8    1
(FD727438) CAAA8603.fwd CAAA Petromyzon marinus Petromyzon m...    44   3.8    1
(FD370649) CBPN47494.g1 CBPN: Subtracted channel catfish cDN...    44   3.8    1
(AV991661) Ciona intestinalis cDNA, clone:cicl53h18, 5' end,...    44   3.8    1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    44   3.8    1
(EI321504) GM_WBc0056P12.f GM_WBc Glycine max genomic clone ...    36   4.3    2
(FE243418) CAPG7635.fwd CAPG Naegleria gruberi amoeba stage ...    36   4.4    2
(AM718855) Cucumis melo subsp. melo EST, clone PS_37-F07-M13R.     40   4.6    2
(AC170722) Atelerix albiventris clone LB4-424M24, WORKING DR...    36   4.6    5
(BE387363) 601277222F1 NIH_MGC_20 Homo sapiens cDNA clone IM...    38   5.1    2
(AF270648) Plasmodium falciparum mature parasite-infected er...    36   5.3    2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    40   5.6    6
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    40   5.6    6
(AC224938) Bos taurus clone CH240-472K16, WORKING DRAFT SEQU...    34   5.8    6
(AC162558) Bos taurus clone CH240-120D11, WORKING DRAFT SEQU...    38   6.0    3
(M69183) Plasmodium falciparum (MESA) mRNA exons 1-2, comple...    36   6.3    2
(AC021632) Mus musculus chromosome 11 clone MGS1-213E3 map 1...    32   6.5    2
(DT740690) EST1174539 Aquilegia cDNA library Aquilegia formo...    32   6.6    2
(AC179512) Strongylocentrotus purpuratus clone R3-6A11, WORK...    32   6.7    2
(AC135399) Rattus norvegicus clone CH230-12I11, *** SEQUENCI...    30   6.8    2
(AC095818) Rattus norvegicus clone CH230-10A2, *** SEQUENCIN...    32   6.8    2
(AC114166) Rattus norvegicus clone CH230-165F24, *** SEQUENC...    30   6.8    2
(AF056936) Plasmodium falciparum mature parasite-infected er...    36   6.8    2
(AC175860) Strongylocentrotus purpuratus clone R3-15H18, WOR...    30   6.9    2
(CU222534) Mouse DNA sequence from clone DN-162N18 on chromo...    30   6.9    2
(CR450849) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   6.9    2
(AC123760) Mus musculus chromosome 1, clone RP24-327B7, comp...    30   7.0    2
(AC116692) Mus musculus chromosome 1, clone RP24-355C22, com...    30   7.0    2
(AC173550) Strongylocentrotus purpuratus clone R3-15D13, WOR...    30   7.0    2
(AC079412) Homo sapiens chromosome 16 clone CTD-2302M15, com...    40   7.3    3
(BS000623) Pan troglodytes chromosome Y clone:PTBY-008C04, c...    40   7.5    3
(AC192287) Gallus gallus BAC clone CH261-20J24 from chromoso...    40   7.6    4
(AC099426) Rattus norvegicus clone CH230-209O11, WORKING DRA...    38   8.0    3
(AP003759) Oryza sativa Japonica Group genomic DNA, chromoso...    38   8.1    2
(AP003816) Oryza sativa Japonica Group genomic DNA, chromoso...    42   8.3    2
(BC158175) Danio rerio zgc:171553, mRNA (cDNA clone MGC:1715...    32   9.0    2
(AC222773) Bos taurus clone CH240-438O21, WORKING DRAFT SEQU...    42   9.3    2
(CN840412) AGENCOURT_24295539 NIH_ZGC_18 Danio rerio cDNA cl...    32   9.3    2
(EL383566) CFFM20837.b1_J01.ab1 CFF(LMS) safflower Carthamus...    32   9.4    2
(BJ353817) Dictyostelium discoideum cDNA clone:dda51c17, 3' ...    30   9.5    2
(BJ386804) Dictyostelium discoideum cDNA clone:dds10d19, 5' ...    32   9.5    2
(AL916604) Danio rerio EST sequence, clone 019-B09-2.              32   9.6    2
(AP004342) Oryza sativa Japonica Group genomic DNA, chromoso...    38   9.6    2
(AC201269) Strongylocentrotus purpuratus clone R3-16A21, WOR...    38   9.7    2
(BP946119) Bruguiera gymnorhiza mRNA, clone: Bg04-10_L24, 5'...    32   9.7    2
(AC164859) Bos taurus clone CH240-153B5, *** SEQUENCING IN P...    36   9.7    3
(BP951145) Bruguiera gymnorhiza mRNA, clone: Bg05-16_P18, 5'...    32   9.7    2
(AP004316) Oryza sativa Japonica Group genomic DNA, chromoso...    42   9.8    2
(EB927835) 12768107 ZF31 Danio rerio cDNA clone 3273505, mRN...    32   9.9    2

>(AU052519) Dictyostelium discoideum slug cDNA, clone SLD460.
          Length = 382

 Score =  252 bits (127), Expect(2) = e-114
 Identities = 127/127 (100%)
 Strand = Plus / Plus


Query: 137 gaacaaccaactattgaacaacaacaacaagaagaggaagaatcaagaccagttattgaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gaacaaccaactattgaacaacaacaacaagaagaggaagaatcaagaccagttattgaa 196


Query: 197 tctgaaccaattgttgttgttgaagcaactgaacaaccaacagttgaagaagaatccgat 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tctgaaccaattgttgttgttgaagcaactgaacaaccaacagttgaagaagaatccgat 256


Query: 257 gaagaag 263
           |||||||
Sbjct: 257 gaagaag 263

 Score =  192 bits (97), Expect(2) = e-114
 Identities = 97/97 (100%)
 Strand = Plus / Plus


Query: 1  agaagaagaagtaaaacaaacacaagaagaaactacaactgttacagaatcagttgtggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agaagaagaagtaaaacaaacacaagaagaaactacaactgttacagaatcagttgtggt 60


Query: 61 cactgaaactgttattactgaagaagagaaaaatgaa 97
          |||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgaaactgttattactgaagaagagaaaaatgaa 97

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 363,224,518
Number of extensions: 34213941
Number of successful extensions: 4551616
Number of sequences better than 10.0: 428
Length of query: 381
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 358
Effective length of database: 99,442,330,388
Effective search space: 35600354278904
Effective search space used: 35600354278904
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03961-1 (Contig-U03961-1Q) /CSM_Contig/Contig-U03961-1Q.Seq.d
         (381 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 50,520,859
Number of extensions: 105620
Number of successful extensions: 297
Number of sequences better than 10.0: 0
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 0
Length of query: 127
Length of database: 1,061,185,681
Length adjustment: 92
Effective length of query: 35
Effective length of database: 760,488,465
Effective search space: 26617096275
Effective search space used: 26617096275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U03961-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0