Contig-U03915-1 |
Contig ID |
Contig-U03915-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
167 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1353511 |
End point |
1353344 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U03915 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 9 |
Homology vs CSM-cDNA |
|
dna update |
2006. 3. 8 |
Homology vs DNA |
Query= Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Contig-U03915-1Q.Seq.d (167 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq; ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq; ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq; ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum23.seq; ddbjhum3.seq; ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri1.seq; ddbjpri2.seq; /db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq; ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod14.seq; ddbjrod15.seq; ddbjrod16.seq; ddbjrod17.seq; ddbjrod18.seq; ddbjrod19.seq; ddbjrod2.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq; ddbjmam1.seq; ddbjmam2.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq; ddbjvrt7.seq; ddbjvrt8.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq; ddbjinv7.seq; /db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq; ddbjpln11.seq; ddbjpln12.seq; ddbjpln13.seq; ddbjpln14.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct10.seq; ddbjbct11.seq; ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq; ddbjgss104.seq; ddbjgss105.seq; ddbjgss106.seq; ddbjgss107.seq; ddbjgss108.seq; ddbjgss109.seq; ddbjgss11.seq; ddbjgss110.seq; ddbjgss111.seq; ddbjgss112.seq; ddbjgss113.seq; ddbjgss114.seq; ddbjgss115.seq; ddbjgss116.seq; ddbjgss117.seq; ddbjgss118.seq; ddbjgss119.seq; ddbjgss12.seq; ddbjgss120.seq; ddbjgss121.seq; ddbjgss122.seq; ddbjgss123.seq; ddbjgss124.seq; ddbjgss125.seq; ddbjgss126.seq; ddbjgss127.seq; ddbjgss128.seq; ddbjgss129.seq; ddbjgss13.seq; ddbjgss130.seq; ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq; ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq; /db/DDBJNEW.DATA/a/new_ddbjgss2.seq; /db/DDBJNEW.DATA/a/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq; ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq; ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq; ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq; ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq; ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq; ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq; ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq; ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq; ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq; ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq; ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq; ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg53.seq; ddbjhtg54.seq; ddbjhtg55.seq; ddbjhtg56.seq; ddbjhtg57.seq; ddbjhtg58.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg1.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg2.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg3.seq; ddbjpat1.seq; ddbjpat10.seq; ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq; ddbjpat15.seq; ddbjpat16.seq; ddbjpat17.seq; ddbjpat18.seq; ddbjpat19.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts10.seq; ddbjsts11.seq; ddbjsts12.seq; ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq; ddbjsts5.seq; ddbjsts6.seq; ddbjsts7.seq; ddbjsts8.seq; ddbjsts9.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq; /db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq; /db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq; /db/DDBJNEW.DATA/a/new_est_cele1.seq; est_drer1.seq; /db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq; /db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq; /db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq; est_hum3.seq; est_hum4.seq; est_hum5.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq; /db/DDBJNEW.DATA/a/new_est_hum2.seq; est_lesc1.seq; /db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_osat1.seq; /db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq; /db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq; /db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq; /db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq; est_rest3.seq; est_rest4.seq; est_rest5.seq; est_rest6.seq; est_rest7.seq; est_rest8.seq; /db/DDBJNEW.DATA/a/new_est_rest1.seq 51,813,103 sequences; 57,292,245,292 total letters
Searching....................................................done
Score E Sequences producing significant alignments: (bits) Value N
AP004035|AP004035.1 Homo sapiens genomic DNA, chromosome 11q... 54 9e-04 1 AX458554|AX458554.1 Sequence 100 from Patent WO0246454. 54 9e-04 1 AC148268|AC148268.2 Callithrix jacchus clone CH259-435H2, WO... 54 9e-04 1 AC092763|AC092763.2 Pan troglodytes clone RP43-152I22, WORKI... 54 9e-04 1 AC092762|AC092762.2 Pan troglodytes clone RP43-108O4, WORKIN... 54 9e-04 1 AC092517|AC092517.2 Papio anubis clone RP41-91P1, WORKING DR... 54 9e-04 1 AC161122|AC161122.3 Pan troglodytes BAC clone CH251-727J16 f... 54 9e-04 1 AC000120|AC000120.1 Homo sapiens BAC clone CTB-161K23 from 7... 54 9e-04 1 AC171998|AC171998.2 Bos taurus clone CH240-278F11, *** SEQUE... 52 0.004 1 AC170838|AC170838.2 Bos taurus clone CH240-253I13, *** SEQUE... 52 0.004 1 CR767821|CR767821.1 Ehrlichia ruminantium strain Welgevonden... 38 0.008 2 CR925678|CR925678.1 Ehrlichia ruminantium str. Welgevonden, ... 38 0.008 2 CR925677|CR925677.1 Ehrlichia ruminantium str. Gardel, compl... 38 0.031 2 AC161997|AC161997.2 Bos taurus clone CH240-108H22, *** SEQUE... 36 0.033 2 CR392345|CR392345.3 Zebrafish DNA sequence *** SEQUENCING IN... 40 0.034 2 CC529414|CC529414.1 CH240_405H19.T7 CHORI-240 Bos taurus gen... 48 0.055 1 BZ862732|BZ862732.1 CH240_257C15.TJ CHORI-240 Bos taurus gen... 48 0.055 1 BX276187|BX276187.8 Zebrafish DNA sequence from clone DKEY-2... 48 0.055 1 AC150466|AC150466.2 Callithrix jacchus clone CH259-85B19, WO... 40 0.10 3 CR854904|CR854904.7 Zebrafish DNA sequence *** SEQUENCING IN... 32 0.12 2 AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 0.14 5 CW944146|CW944146.1 TcB26.1_G04_SP6 Tribolium BAC library Tr... 38 0.16 2 AX346356|AX346356.1 Sequence 1427 from Patent WO0200928. 40 0.19 2 AA767612|AA767612.1 ob47f03.s1 NCI_CGAP_GCB1 Homo sapiens cD... 34 0.19 3 AX458553|AX458553.1 Sequence 99 from Patent WO0246454. 46 0.19 2 AF465256|AF465256.1 Oryza sativa cultivar Milyang 23 gibbere... 42 0.21 2 CT025899|CT025899.3 Zebrafish DNA sequence *** SEQUENCING IN... 46 0.22 1 AC026824|AC026824.2 Homo sapiens chromosome 3 clone RP11-648... 46 0.22 1 AP007843|AP007843.1 Lotus corniculatus var. japonicus genomi... 46 0.22 1 AC026878|AC026878.12 Mus musculus chromosome 7 clone RP23-39... 46 0.22 1 AX323772|AX323772.1 Sequence 260 from Patent WO0192565. 46 0.22 1 AC126215|AC126215.3 Rattus norvegicus clone CH230-92P6, WORK... 46 0.22 1 AC022248|AC022248.2 Homo sapiens clone RP11-23J7, WORKING DR... 46 0.22 1 AC015222|AC015222.1 Drosophila melanogaster, *** SEQUENCING ... 46 0.22 1 AC117423|AC117423.2 Homo sapiens chromosome 3 clone RP11-167... 46 0.22 1 AC148135|AC148135.1 Atelerix albiventris clone LB4-506N2, WO... 46 0.22 1 AC103216|AC103216.6 Rattus norvegicus clone CH230-16C5, WORK... 46 0.22 1 DX071330|DX071330.1 KBrB081A16F KBrB, Brassica rapa BamHI BA... 46 0.22 1 DU810260|DU810260.1 OG_ABa0101I13.f OG_ABa Oryza granulata g... 46 0.22 1 CE606293|CE606293.1 tigr-gss-dog-17000327553799 Dog Library ... 46 0.22 1 AL341681|AL341681.1 Tetraodon nigroviridis genome survey seq... 46 0.22 1 AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, c... 46 0.22 1 AL392145|AL392145.1 Arabidopsis thaliana DNA chromosome 5, B... 46 0.22 1 AB006777|AB006777.1 Arabidopsis thaliana vsp1 gene for veget... 46 0.22 1 AE003828|AE003828.4 Drosophila melanogaster chromosome 2R, s... 46 0.22 1 CR382398|CR382398.1 Plasmodium falciparum chromosome 6, comp... 46 0.22 1 AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromo... 46 0.22 1 AL031747|AL031747.9 Plasmodium falciparum DNA from MAL1P4. 46 0.22 1 CR352233|CR352233.9 Zebrafish DNA sequence from clone CH211-... 46 0.22 1 AC009343|AC009343.9 Drosophila melanogaster clone BACR08L17,... 46 0.22 1 BX465858|BX465858.8 Zebrafish DNA sequence from clone DKEY-1... 46 0.22 1 AL954172|AL954172.9 Zebrafish DNA sequence from clone CH211-... 46 0.22 1 AC115920|AC115920.11 Mus musculus chromosome 1, clone RP24-4... 46 0.22 1 AF332579|AF332579.1 Mus musculus small nuclear ribonucleopro... 46 0.22 1 AC167813|AC167813.4 Mus musculus BAC clone RP24-233L18 from ... 46 0.22 1 AC108745|AC108745.7 Homo sapiens 3 BAC RP11-232M24 (Roswell ... 46 0.22 1 AC092956|AC092956.5 Homo sapiens 3 BAC RP11-648O5 (Roswell P... 46 0.22 1 AL445473|AL445473.7 Human DNA sequence from clone RP11-214M7... 46 0.22 1 AC092855|AC092855.39 Mus musculus strain C57BL/6J chromosome... 46 0.22 1 DQ323045|DQ323045.1 Phaseolus vulgaris clone BAC-71F18, comp... 36 0.24 4 AL845268|AL845268.2 Mouse DNA sequence from clone RP23-69A6 ... 40 0.37 3 DD010736|DD010736.1 Diagnosis of known genetic Parameters wi... 32 0.38 2 AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 0.41 2 AX344574|AX344574.1 Sequence 25 from Patent WO0200932. 32 0.44 2 AX344573|AX344573.1 Sequence 24 from Patent WO0200932. 32 0.44 2 AC055741|AC055741.28 Homo sapiens chromosome 3 clone RP11-33... 32 0.45 2 AC078919|AC078919.17 Homo sapiens chromosome 3 clone RP11-24... 34 0.45 2 AF411849|AF411849.1 Homo sapiens USH3 region, partial sequence. 34 0.46 2 AC013494|AC013494.4 Homo sapiens chromosome 3 clone RP11-62N... 32 0.46 2 AC130410|AC130410.1 Homo sapiens chromosome 3 clone RP11-62N... 32 0.46 2 AL161533|AL161533.2 Arabidopsis thaliana DNA chromosome 4, c... 36 0.46 2 AC140408|AC140408.3 Mus musculus BAC clone RP24-92P14 from c... 34 0.46 2 AC132601|AC132601.4 Mus musculus BAC clone RP24-165F4 from c... 34 0.46 2 AC078816|AC078816.16 Homo sapiens 3 BAC RP11-600P18 (Roswell... 34 0.46 2 AC022336|AC022336.12 Homo sapiens 3 BAC RP11-71H17 (Roswell ... 32 0.46 2 AC141873|AC141873.4 Mus musculus BAC clone RP24-332J21 from ... 34 0.46 2 AC134524|AC134524.5 Mus musculus BAC clone RP24-496E20 from ... 34 0.46 2 AL049638|AL049638.1 Arabidopsis thaliana DNA chromosome 4, B... 36 0.47 2 BX957314|BX957314.11 Zebrafish DNA sequence from clone CH211... 32 0.48 2 AF442957|AF442957.1 Ostrinia nubilalis mitochondrion, comple... 42 0.51 3 AF467260|AF467260.1 Ostrinia furnacalis mitochondrion, compl... 42 0.51 3 CL868276|CL868276.1 Gma_02_E05_T3 Soybean Genome Shotgun Seq... 42 0.56 2 U53884|U53884.1 Dictyostelium discoideum aimless RasGEF (ale... 32 0.58 2 DU836598|DU836598.1 MUGQ_CH252P012A06T7_GL269_079 CHORI-252 ... 34 0.60 2 BM168841|BM168841.1 EST571364 PyBS Plasmodium yoelii yoelii ... 32 0.61 2 AA236775|AA236775.1 zr99f10.r1 NCI_CGAP_GCB1 Homo sapiens cD... 32 0.61 2 BU497315|BU497315.1 PfESToab57g03.y1 Plasmodium falciparum 3... 36 0.61 2 AA196625|AA196625.1 zq07h10.s1 Stratagene muscle 937209 Homo... 32 0.62 2 AX335426|AX335426.1 Sequence 5935 from Patent WO0194629. 32 0.62 2 AQ322554|AQ322554.1 RPCI11-92N1.TV RPCI-11 Homo sapiens geno... 34 0.62 2 BD189699|BD189699.1 sd1 gene involved in semidwarfing of pla... 40 0.71 2 BD187781|BD187781.1 sd1 gene involved in semidwarfing of pla... 40 0.71 2 AF254556|AF254556.1 Oryza sativa gibberellin 20 oxidase (GA5... 40 0.71 2 AX251477|AX251477.1 Sequence 445 from Patent WO0168912. 44 0.76 2 BD452998|BD452998.1 Diagnosis of Diseases Associated with tu... 44 0.76 2 AX345695|AX345695.1 Sequence 766 from Patent WO0200928. 32 0.81 3 AF465255|AF465255.1 Oryza sativa cultivar Nipponbare gibbere... 40 0.83 2 BG893763|BG893763.1 kt15a02.y1 Strongyloides ratti L1 pAMP1 ... 44 0.86 1 CB098010|CB098010.1 ku48a06.y1 Strongyloides ratti PA female... 44 0.86 1 BW940124|BW940124.1 Branchiostoma floridae cDNA, neurula clo... 44 0.86 1
>AP004035|AP004035.1 Homo sapiens genomic DNA, chromosome 11q clone:RP11-725I16, WORKING DRAFT SEQUENCE, 32 unordered pieces. Length = 142296
Score = 54.0 bits (27), Expect = 9e-04 Identities = 27/27 (100%) Strand = Plus / Minus
Query: 138 taatattataaaatacatattttaaaa 164 ||||||||||||||||||||||||||| Sbjct: 115247 taatattataaaatacatattttaaaa 115221
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Hits to DB: 9,232,921 Number of Sequences: 51813103 Number of extensions: 9232921 Number of successful extensions: 2846552 Number of sequences better than 10.0: 955 length of query: 167 length of database: 57,292,245,292 effective HSP length: 22 effective length of query: 145 effective length of database: 56,152,357,026 effective search space: 8142091768770 effective search space used: 8142091768770 T: 0 A: 0 X1: 11 (21.8 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits) [blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
|
protein update |
2009. 7.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |