Contig-U03915-1
Contig ID Contig-U03915-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Contig-U03915-1Q.Seq.d
CAACACAACAAATTCAACAAATTCAAATACAACAACAGCAACAACAACAA
CAACAACAAATTAATAATCAACAAATACAATTAAATAATTAATAATTAAC
NATGTATTTATTCTCTAATAAAATATAGTATTATTTTTAATATTATAAAA
TACATATTTTAAAAAAT

Gap no gap
Contig length 167
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1353511
End point 1353344
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U03915
List of clone(s)

est1=SLC377Z,1,168
Translated Amino Acid sequence
TQQIQQIQIQQQQQQQQQQINNQQIQLNN**ltmylfsnki*yyf*yykihilkn


Translated Amino Acid sequence (All Frames)
Frame A:
qhnkfnkfkynnsnnnnnnkliinkyn*iinn*xciyslikysiifniikyif*k


Frame B:
nttnstnsntttattttttn**stntik*liinxvfil**nivlflil*ntyfkk


Frame C:
TQQIQQIQIQQQQQQQQQQINNQQIQLNN**ltmylfsnki*yyf*yykihilkn


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03915-1 (Contig-U03915-1Q)
/CSM_Contig/Contig-U03915-1Q.Seq.d
(167 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Conti... 135 2e-32
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti... 50 7e-07
Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Conti... 40 7e-04
Contig-U11714-1 (Contig-U11714-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U10950-1 (Contig-U10950-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U14392-1 (Contig-U14392-1Q) /CSM_Contig/Conti... 36 0.011
Contig-U11144-1 (Contig-U11144-1Q) /CSM_Contig/Conti... 36 0.011
Contig-U04455-1 (Contig-U04455-1Q) /CSM_Contig/Conti... 36 0.011
Contig-U01673-1 (Contig-U01673-1Q) /CSM_Contig/Conti... 36 0.011
Contig-U04482-1 (Contig-U04482-1Q) /CSM_Contig/Conti... 34 0.043

>Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Contig-U03915-1Q.Seq.d
Length = 167

Score = 135 bits (68), Expect = 2e-32
Identities = 71/71 (100%)
Strand = Plus / Plus


Query: 97 taacnatgtatttattctctaataaaatatagtattatttttaatattataaaatacata 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 taacnatgtatttattctctaataaaatatagtattatttttaatattataaaatacata 156


Query: 157 ttttaaaaaat 167
|||||||||||
Sbjct: 157 ttttaaaaaat 167


>Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
Length = 1389

Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus


Query: 122 aatatagtattatttttaatattataaaa 150
||||||||||||||||||| |||||||||
Sbjct: 137 aatatagtattatttttaaaattataaaa 165


>Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Contig-U12920-1Q.Seq.d
Length = 1683

Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 127 agtattatttttaatattat 146
||||||||||||||||||||
Sbjct: 610 agtattatttttaatattat 629


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4426
Number of Sequences: 6905
Number of extensions: 4426
Number of successful extensions: 1598
Number of sequences better than 10.0: 272
length of query: 167
length of database: 5,674,871
effective HSP length: 15
effective length of query: 152
effective length of database: 5,571,296
effective search space: 846836992
effective search space used: 846836992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2006. 3. 8
Homology vs DNA
Query= Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Contig-U03915-1Q.Seq.d
(167 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum23.seq;
ddbjhum3.seq; ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq;
ddbjhum8.seq; ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq;
ddbjpri1.seq; ddbjpri2.seq; /db/DDBJNEW.DATA/a/new_ddbjpri.seq;
ddbjrod1.seq; ddbjrod10.seq; ddbjrod11.seq; ddbjrod12.seq;
ddbjrod13.seq; ddbjrod14.seq; ddbjrod15.seq; ddbjrod16.seq;
ddbjrod17.seq; ddbjrod18.seq; ddbjrod19.seq; ddbjrod2.seq;
ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq; ddbjrod8.seq;
ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq; ddbjmam1.seq;
ddbjmam2.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
ddbjvrt7.seq; ddbjvrt8.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq;
ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
ddbjinv6.seq; ddbjinv7.seq; /db/DDBJNEW.DATA/a/new_ddbjinv.seq;
ddbjpln1.seq; ddbjpln10.seq; ddbjpln11.seq; ddbjpln12.seq;
ddbjpln13.seq; ddbjpln14.seq; ddbjpln2.seq; ddbjpln3.seq;
ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq;
ddbjpln9.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct10.seq; ddbjbct11.seq; ddbjbct2.seq; ddbjbct3.seq;
ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq;
ddbjbct9.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq; ddbjgss1.seq;
ddbjgss10.seq; ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq;
ddbjgss103.seq; ddbjgss104.seq; ddbjgss105.seq; ddbjgss106.seq;
ddbjgss107.seq; ddbjgss108.seq; ddbjgss109.seq; ddbjgss11.seq;
ddbjgss110.seq; ddbjgss111.seq; ddbjgss112.seq; ddbjgss113.seq;
ddbjgss114.seq; ddbjgss115.seq; ddbjgss116.seq; ddbjgss117.seq;
ddbjgss118.seq; ddbjgss119.seq; ddbjgss12.seq; ddbjgss120.seq;
ddbjgss121.seq; ddbjgss122.seq; ddbjgss123.seq; ddbjgss124.seq;
ddbjgss125.seq; ddbjgss126.seq; ddbjgss127.seq; ddbjgss128.seq;
ddbjgss129.seq; ddbjgss13.seq; ddbjgss130.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss76.seq;
ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq; ddbjgss8.seq;
ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq; ddbjgss83.seq;
ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq; ddbjgss87.seq;
ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq; ddbjgss90.seq;
ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq; ddbjgss94.seq;
ddbjgss95.seq; ddbjgss96.seq; ddbjgss97.seq; ddbjgss98.seq;
ddbjgss99.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg53.seq; ddbjhtg54.seq;
ddbjhtg55.seq; ddbjhtg56.seq; ddbjhtg57.seq; ddbjhtg58.seq;
ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg3.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat17.seq; ddbjpat18.seq;
ddbjpat19.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts10.seq;
ddbjsts11.seq; ddbjsts12.seq; ddbjsts2.seq; ddbjsts3.seq;
ddbjsts4.seq; ddbjsts5.seq; ddbjsts6.seq; ddbjsts7.seq; ddbjsts8.seq;
ddbjsts9.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; est_hum5.seq;
/db/DDBJNEW.DATA/a/new_est_hum1.seq;
/db/DDBJNEW.DATA/a/new_est_hum2.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq; est_rest6.seq;
est_rest7.seq; est_rest8.seq; /db/DDBJNEW.DATA/a/new_est_rest1.seq
51,813,103 sequences; 57,292,245,292 total letters

Searching....................................................done

Score E
Sequences producing significant alignments: (bits) Value N

AP004035|AP004035.1 Homo sapiens genomic DNA, chromosome 11q... 54 9e-04 1
AX458554|AX458554.1 Sequence 100 from Patent WO0246454. 54 9e-04 1
AC148268|AC148268.2 Callithrix jacchus clone CH259-435H2, WO... 54 9e-04 1
AC092763|AC092763.2 Pan troglodytes clone RP43-152I22, WORKI... 54 9e-04 1
AC092762|AC092762.2 Pan troglodytes clone RP43-108O4, WORKIN... 54 9e-04 1
AC092517|AC092517.2 Papio anubis clone RP41-91P1, WORKING DR... 54 9e-04 1
AC161122|AC161122.3 Pan troglodytes BAC clone CH251-727J16 f... 54 9e-04 1
AC000120|AC000120.1 Homo sapiens BAC clone CTB-161K23 from 7... 54 9e-04 1
AC171998|AC171998.2 Bos taurus clone CH240-278F11, *** SEQUE... 52 0.004 1
AC170838|AC170838.2 Bos taurus clone CH240-253I13, *** SEQUE... 52 0.004 1
CR767821|CR767821.1 Ehrlichia ruminantium strain Welgevonden... 38 0.008 2
CR925678|CR925678.1 Ehrlichia ruminantium str. Welgevonden, ... 38 0.008 2
CR925677|CR925677.1 Ehrlichia ruminantium str. Gardel, compl... 38 0.031 2
AC161997|AC161997.2 Bos taurus clone CH240-108H22, *** SEQUE... 36 0.033 2
CR392345|CR392345.3 Zebrafish DNA sequence *** SEQUENCING IN... 40 0.034 2
CC529414|CC529414.1 CH240_405H19.T7 CHORI-240 Bos taurus gen... 48 0.055 1
BZ862732|BZ862732.1 CH240_257C15.TJ CHORI-240 Bos taurus gen... 48 0.055 1
BX276187|BX276187.8 Zebrafish DNA sequence from clone DKEY-2... 48 0.055 1
AC150466|AC150466.2 Callithrix jacchus clone CH259-85B19, WO... 40 0.10 3
CR854904|CR854904.7 Zebrafish DNA sequence *** SEQUENCING IN... 32 0.12 2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 0.14 5
CW944146|CW944146.1 TcB26.1_G04_SP6 Tribolium BAC library Tr... 38 0.16 2
AX346356|AX346356.1 Sequence 1427 from Patent WO0200928. 40 0.19 2
AA767612|AA767612.1 ob47f03.s1 NCI_CGAP_GCB1 Homo sapiens cD... 34 0.19 3
AX458553|AX458553.1 Sequence 99 from Patent WO0246454. 46 0.19 2
AF465256|AF465256.1 Oryza sativa cultivar Milyang 23 gibbere... 42 0.21 2
CT025899|CT025899.3 Zebrafish DNA sequence *** SEQUENCING IN... 46 0.22 1
AC026824|AC026824.2 Homo sapiens chromosome 3 clone RP11-648... 46 0.22 1
AP007843|AP007843.1 Lotus corniculatus var. japonicus genomi... 46 0.22 1
AC026878|AC026878.12 Mus musculus chromosome 7 clone RP23-39... 46 0.22 1
AX323772|AX323772.1 Sequence 260 from Patent WO0192565. 46 0.22 1
AC126215|AC126215.3 Rattus norvegicus clone CH230-92P6, WORK... 46 0.22 1
AC022248|AC022248.2 Homo sapiens clone RP11-23J7, WORKING DR... 46 0.22 1
AC015222|AC015222.1 Drosophila melanogaster, *** SEQUENCING ... 46 0.22 1
AC117423|AC117423.2 Homo sapiens chromosome 3 clone RP11-167... 46 0.22 1
AC148135|AC148135.1 Atelerix albiventris clone LB4-506N2, WO... 46 0.22 1
AC103216|AC103216.6 Rattus norvegicus clone CH230-16C5, WORK... 46 0.22 1
DX071330|DX071330.1 KBrB081A16F KBrB, Brassica rapa BamHI BA... 46 0.22 1
DU810260|DU810260.1 OG_ABa0101I13.f OG_ABa Oryza granulata g... 46 0.22 1
CE606293|CE606293.1 tigr-gss-dog-17000327553799 Dog Library ... 46 0.22 1
AL341681|AL341681.1 Tetraodon nigroviridis genome survey seq... 46 0.22 1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, c... 46 0.22 1
AL392145|AL392145.1 Arabidopsis thaliana DNA chromosome 5, B... 46 0.22 1
AB006777|AB006777.1 Arabidopsis thaliana vsp1 gene for veget... 46 0.22 1
AE003828|AE003828.4 Drosophila melanogaster chromosome 2R, s... 46 0.22 1
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, comp... 46 0.22 1
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromo... 46 0.22 1
AL031747|AL031747.9 Plasmodium falciparum DNA from MAL1P4. 46 0.22 1
CR352233|CR352233.9 Zebrafish DNA sequence from clone CH211-... 46 0.22 1
AC009343|AC009343.9 Drosophila melanogaster clone BACR08L17,... 46 0.22 1
BX465858|BX465858.8 Zebrafish DNA sequence from clone DKEY-1... 46 0.22 1
AL954172|AL954172.9 Zebrafish DNA sequence from clone CH211-... 46 0.22 1
AC115920|AC115920.11 Mus musculus chromosome 1, clone RP24-4... 46 0.22 1
AF332579|AF332579.1 Mus musculus small nuclear ribonucleopro... 46 0.22 1
AC167813|AC167813.4 Mus musculus BAC clone RP24-233L18 from ... 46 0.22 1
AC108745|AC108745.7 Homo sapiens 3 BAC RP11-232M24 (Roswell ... 46 0.22 1
AC092956|AC092956.5 Homo sapiens 3 BAC RP11-648O5 (Roswell P... 46 0.22 1
AL445473|AL445473.7 Human DNA sequence from clone RP11-214M7... 46 0.22 1
AC092855|AC092855.39 Mus musculus strain C57BL/6J chromosome... 46 0.22 1
DQ323045|DQ323045.1 Phaseolus vulgaris clone BAC-71F18, comp... 36 0.24 4
AL845268|AL845268.2 Mouse DNA sequence from clone RP23-69A6 ... 40 0.37 3
DD010736|DD010736.1 Diagnosis of known genetic Parameters wi... 32 0.38 2
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 0.41 2
AX344574|AX344574.1 Sequence 25 from Patent WO0200932. 32 0.44 2
AX344573|AX344573.1 Sequence 24 from Patent WO0200932. 32 0.44 2
AC055741|AC055741.28 Homo sapiens chromosome 3 clone RP11-33... 32 0.45 2
AC078919|AC078919.17 Homo sapiens chromosome 3 clone RP11-24... 34 0.45 2
AF411849|AF411849.1 Homo sapiens USH3 region, partial sequence. 34 0.46 2
AC013494|AC013494.4 Homo sapiens chromosome 3 clone RP11-62N... 32 0.46 2
AC130410|AC130410.1 Homo sapiens chromosome 3 clone RP11-62N... 32 0.46 2
AL161533|AL161533.2 Arabidopsis thaliana DNA chromosome 4, c... 36 0.46 2
AC140408|AC140408.3 Mus musculus BAC clone RP24-92P14 from c... 34 0.46 2
AC132601|AC132601.4 Mus musculus BAC clone RP24-165F4 from c... 34 0.46 2
AC078816|AC078816.16 Homo sapiens 3 BAC RP11-600P18 (Roswell... 34 0.46 2
AC022336|AC022336.12 Homo sapiens 3 BAC RP11-71H17 (Roswell ... 32 0.46 2
AC141873|AC141873.4 Mus musculus BAC clone RP24-332J21 from ... 34 0.46 2
AC134524|AC134524.5 Mus musculus BAC clone RP24-496E20 from ... 34 0.46 2
AL049638|AL049638.1 Arabidopsis thaliana DNA chromosome 4, B... 36 0.47 2
BX957314|BX957314.11 Zebrafish DNA sequence from clone CH211... 32 0.48 2
AF442957|AF442957.1 Ostrinia nubilalis mitochondrion, comple... 42 0.51 3
AF467260|AF467260.1 Ostrinia furnacalis mitochondrion, compl... 42 0.51 3
CL868276|CL868276.1 Gma_02_E05_T3 Soybean Genome Shotgun Seq... 42 0.56 2
U53884|U53884.1 Dictyostelium discoideum aimless RasGEF (ale... 32 0.58 2
DU836598|DU836598.1 MUGQ_CH252P012A06T7_GL269_079 CHORI-252 ... 34 0.60 2
BM168841|BM168841.1 EST571364 PyBS Plasmodium yoelii yoelii ... 32 0.61 2
AA236775|AA236775.1 zr99f10.r1 NCI_CGAP_GCB1 Homo sapiens cD... 32 0.61 2
BU497315|BU497315.1 PfESToab57g03.y1 Plasmodium falciparum 3... 36 0.61 2
AA196625|AA196625.1 zq07h10.s1 Stratagene muscle 937209 Homo... 32 0.62 2
AX335426|AX335426.1 Sequence 5935 from Patent WO0194629. 32 0.62 2
AQ322554|AQ322554.1 RPCI11-92N1.TV RPCI-11 Homo sapiens geno... 34 0.62 2
BD189699|BD189699.1 sd1 gene involved in semidwarfing of pla... 40 0.71 2
BD187781|BD187781.1 sd1 gene involved in semidwarfing of pla... 40 0.71 2
AF254556|AF254556.1 Oryza sativa gibberellin 20 oxidase (GA5... 40 0.71 2
AX251477|AX251477.1 Sequence 445 from Patent WO0168912. 44 0.76 2
BD452998|BD452998.1 Diagnosis of Diseases Associated with tu... 44 0.76 2
AX345695|AX345695.1 Sequence 766 from Patent WO0200928. 32 0.81 3
AF465255|AF465255.1 Oryza sativa cultivar Nipponbare gibbere... 40 0.83 2
BG893763|BG893763.1 kt15a02.y1 Strongyloides ratti L1 pAMP1 ... 44 0.86 1
CB098010|CB098010.1 ku48a06.y1 Strongyloides ratti PA female... 44 0.86 1
BW940124|BW940124.1 Branchiostoma floridae cDNA, neurula clo... 44 0.86 1

>AP004035|AP004035.1 Homo sapiens genomic DNA, chromosome 11q
clone:RP11-725I16, WORKING DRAFT SEQUENCE, 32 unordered
pieces.
Length = 142296

Score = 54.0 bits (27), Expect = 9e-04
Identities = 27/27 (100%)
Strand = Plus / Minus


Query: 138 taatattataaaatacatattttaaaa 164
|||||||||||||||||||||||||||
Sbjct: 115247 taatattataaaatacatattttaaaa 115221

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 9,232,921
Number of Sequences: 51813103
Number of extensions: 9232921
Number of successful extensions: 2846552
Number of sequences better than 10.0: 955
length of query: 167
length of database: 57,292,245,292
effective HSP length: 22
effective length of query: 145
effective length of database: 56,152,357,026
effective search space: 8142091768770
effective search space used: 8142091768770
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Contig-U03915-1Q.Seq.d
(167 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 62,556,121
Number of extensions: 361372
Number of successful extensions: 486
Number of sequences better than 10.0: 0
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 0
Length of query: 55
Length of database: 1,061,185,681
Length adjustment: 28
Effective length of query: 27
Effective length of database: 969,669,137
Effective search space: 26181066699
Effective search space used: 26181066699
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT

psg: 0.64 gvh: 0.11 alm: 0.85 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: mitochondrial
16.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U03915-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0