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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03890-1
Contig ID Contig-U03890-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03890-1 (Contig-U03890-1Q) /CSM_Contig/Contig-U03890-1Q.Seq.d
CCATCGTGTCCAAAAAACTCAATGGGCATTCCAACAATGGTCAAATGGTT
TAGTAATTAAAGAAGAATTCAATGAAAATAAAGGTCCAGCACCAGCATCA
GCATCAGCCACCACTGAAGAAACTAAAGTTGAAGAAGCAGCAGCAGTTGT
TGTAGCATCTGAACAAACCACCACCGAAGAAACTACCAAAACACATGATA
TTAGAGCAAATTTAGAAGCAGTTATTAAAGGTATTCAAGATAATAAGATT
TTAGAAGTATTTGAAAAATACTATCATGACGAAATTGTTATGTTTGAAAA
AGGTGATTCAACCAATCGTGTTGGTAAAGCTGCCAACCGTGCTGCTGAAG
AAGCTTTTGTCAGTAACGCAACTATTCATGAAGCTAAAGTTTTAAAAACA
ATTGTCGATGGTGAAAATTCAGCATATGAAATGTTTATGGATTTCACTTA
TGGTGGTAACCGTGTTCAAAAAACTCAATGGGCATTCCAACAATGGTCAA
ATGGTTTAATTATTAAAGAAGAATTCAACGAAAATAAAGGTCCAGCTCCA
GCTGCAACTCCAACACCAGCCACTGAAGAAACTAAAGTTGAAGAAGCAGC
AGCAGTTGTTGTTCCACCAGTTACTCATGATATTAGAGCAAATTTAGATT
CAATTATTAAAGGTATTCAAGAAGGTAGAATTTTAGAAGTATTTGATAAA
TATTATCATGATGAAATCGTTATGTTTGAAAATGGTGATTCAACCAATCG
TGTTGGTAAAGAAGCCAATAGAAAAGCCGAAGAATCATTTGTTAATAATG
CAACCATTCATGAAGCAAAATTAACCAAAATCTTAGTCGATGGTAATAAC
ACTGCCTATGAAATGTATATGGATTTCACTTATGGTGGTCACAAAGTTGC
TAAAACTCAATGGGCTTTACAAGAATGGAAAGATGGTAAAGTCATCAAAG
AAGAATTTTATTAAAAAAATTTGAAAAAAAAAACAAAAACAAAAAAAGCA
AATTAATAAAATAAAATAAAATAAAATAAATATATTTGTATTTGTAATAA
AAATAAAAT
Gap no gap
Contig length 1059
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 3
Link to clone list U03890
List of clone(s) 

est1=SLB884Z,1,563
est2=SLB884F,176,811
est3=SSF762E,600,1060
Translated Amino Acid sequence 
HRVQKTQWAFQQWSNGLVIKEEFNENKGPAPASASATTEETKVEEAAAVVVASEQTTTEE
TTKTHDIRANLEAVIKGIQDNKILEVFEKYYHDEIVMFEKGDSTNRVGKAANRAAEEAFV
SNATIHEAKVLKTIVDGENSAYEMFMDFTYGGNRVQKTQWAFQQWSNGLIIKEEFNENKG
PAPAATPTPATEETKVEEAAAVVVPPVTHDIRANLDSIIKGIQEGRILEVFDKYYHDEIV
MFENGDSTNRVGKEANRKAEESFVNNATIHEAKLTKILVDGNNTAYEMYMDFTYGGHKVA
KTQWALQEWKDGKVIKEEFY*knlkkktktkkan**nkik*nkyicicnknk
Translated Amino Acid sequence (All Frames) 
Frame A:
pscpknsmgiptmvkwfsn*rriq*k*rsstsisishh*rn*s*rssssccsi*tnhhrr
nyqnt*y*skfrssy*rysr**dfrsi*kils*rncyv*kr*fnqscw*scqpcc*rsfc
q*rnys*s*sfknncrw*kfsi*nvygfhlww*pcsknsmgiptmvkwfny*rriqrk*r
sssscnsntsh*rn*s*rssssccstsys*y*skfrfny*rysrr*nfrsi**ils**nr
yv*kw*fnqscw*rsq*ksrriic**cnhs*skinqnlsrw**hcl*nvygfhlwwsqsc
*nsmgftrmerw*shqrrillkkfekknknkksklik*nkik*iylyl**k*n


Frame B:
HRVQKTQWAFQQWSNGLVIKEEFNENKGPAPASASATTEETKVEEAAAVVVASEQTTTEE
TTKTHDIRANLEAVIKGIQDNKILEVFEKYYHDEIVMFEKGDSTNRVGKAANRAAEEAFV
SNATIHEAKVLKTIVDGENSAYEMFMDFTYGGNRVQKTQWAFQQWSNGLIIKEEFNENKG
PAPAATPTPATEETKVEEAAAVVVPPVTHDIRANLDSIIKGIQEGRILEVFDKYYHDEIV
MFENGDSTNRVGKEANRKAEESFVNNATIHEAKLTKILVDGNNTAYEMYMDFTYGGHKVA
KTQWALQEWKDGKVIKEEFY*knlkkktktkkan**nkik*nkyicicnknk


Frame C:
ivskklnghsnngqmv**lkknsmkikvqhqhqhqpplkklklkkqqqll*hlnkpppkk
lpkhmileqi*kqllkvfkiirf*kylkntimtkllclkkviqpivlvklptvllkklls
vtqlfmklkf*kqlsmvkiqhmkclwislmvvtvfkklnghsnngqmv*llkknstkikv
qlqlqlqhqplkklklkkqqqllfhqllmileqi*iqllkvfkkvef*kyliniimmksl
clkmviqpivlvkkpiekpknhllimqpfmkqn*pks*smvitlpmkciwislmvvtkll
klnglykngkmvksskknfikki*kkkqkqkkqinkik*nkinifvfvikik
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03890-1 (Contig-U03890-1Q)
/CSM_Contig/Contig-U03890-1Q.Seq.d
         (1059 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03890-1 (Contig-U03890-1Q) /CSM_Contig/Conti...  1905  0.0
Contig-U06898-1 (Contig-U06898-1Q) /CSM_Contig/Conti...   866  0.0
Contig-U06766-1 (Contig-U06766-1Q) /CSM_Contig/Conti...   424  e-119
Contig-U12323-1 (Contig-U12323-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U13882-1 (Contig-U13882-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12350-1 (Contig-U12350-1Q) /CSM_Contig/Conti...    36  0.075

>Contig-U03890-1 (Contig-U03890-1Q) /CSM_Contig/Contig-U03890-1Q.Seq.d
          Length = 1059

 Score = 1905 bits (961), Expect = 0.0
 Identities = 961/961 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatcgtgtccaaaaaactcaatgggcattccaacaatggtcaaatggtttagtaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccatcgtgtccaaaaaactcaatgggcattccaacaatggtcaaatggtttagtaattaa 60

                                                                       
Query: 61  agaagaattcaatgaaaataaaggtccagcaccagcatcagcatcagccaccactgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agaagaattcaatgaaaataaaggtccagcaccagcatcagcatcagccaccactgaaga 120

                                                                       
Query: 121 aactaaagttgaagaagcagcagcagttgttgtagcatctgaacaaaccaccaccgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactaaagttgaagaagcagcagcagttgttgtagcatctgaacaaaccaccaccgaaga 180

                                                                       
Query: 181 aactaccaaaacacatgatattagagcaaatttagaagcagttattaaaggtattcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aactaccaaaacacatgatattagagcaaatttagaagcagttattaaaggtattcaaga 240

                                                                       
Query: 241 taataagattttagaagtatttgaaaaatactatcatgacgaaattgttatgtttgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taataagattttagaagtatttgaaaaatactatcatgacgaaattgttatgtttgaaaa 300

                                                                       
Query: 301 aggtgattcaaccaatcgtgttggtaaagctgccaaccgtgctgctgaagaagcttttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggtgattcaaccaatcgtgttggtaaagctgccaaccgtgctgctgaagaagcttttgt 360

                                                                       
Query: 361 cagtaacgcaactattcatgaagctaaagttttaaaaacaattgtcgatggtgaaaattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagtaacgcaactattcatgaagctaaagttttaaaaacaattgtcgatggtgaaaattc 420

                                                                       
Query: 421 agcatatgaaatgtttatggatttcacttatggtggtaaccgtgttcaaaaaactcaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcatatgaaatgtttatggatttcacttatggtggtaaccgtgttcaaaaaactcaatg 480

                                                                       
Query: 481 ggcattccaacaatggtcaaatggtttaattattaaagaagaattcaacgaaaataaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggcattccaacaatggtcaaatggtttaattattaaagaagaattcaacgaaaataaagg 540

                                                                       
Query: 541 tccagctccagctgcaactccaacaccagccactgaagaaactaaagttgaagaagcagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccagctccagctgcaactccaacaccagccactgaagaaactaaagttgaagaagcagc 600

                                                                       
Query: 601 agcagttgttgttccaccagttactcatgatattagagcaaatttagattcaattattaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agcagttgttgttccaccagttactcatgatattagagcaaatttagattcaattattaa 660

                                                                       
Query: 661 aggtattcaagaaggtagaattttagaagtatttgataaatattatcatgatgaaatcgt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggtattcaagaaggtagaattttagaagtatttgataaatattatcatgatgaaatcgt 720

                                                                       
Query: 721 tatgtttgaaaatggtgattcaaccaatcgtgttggtaaagaagccaatagaaaagccga 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatgtttgaaaatggtgattcaaccaatcgtgttggtaaagaagccaatagaaaagccga 780

                                                                       
Query: 781 agaatcatttgttaataatgcaaccattcatgaagcaaaattaaccaaaatcttagtcga 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agaatcatttgttaataatgcaaccattcatgaagcaaaattaaccaaaatcttagtcga 840

                                                                       
Query: 841 tggtaataacactgcctatgaaatgtatatggatttcacttatggtggtcacaaagttgc 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tggtaataacactgcctatgaaatgtatatggatttcacttatggtggtcacaaagttgc 900

                                                                       
Query: 901 taaaactcaatgggctttacaagaatggaaagatggtaaagtcatcaaagaagaatttta 960
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 taaaactcaatgggctttacaagaatggaaagatggtaaagtcatcaaagaagaatttta 960

            
Query: 961 t 961
           |
Sbjct: 961 t 961


>Contig-U06898-1 (Contig-U06898-1Q) /CSM_Contig/Contig-U06898-1Q.Seq.d
          Length = 476

 Score =  866 bits (437), Expect = 0.0
 Identities = 451/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 65  gaattcaatgaaaataaaggtccagcaccagcatcagcatcagccaccactgaagaaact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaattcaatgaaaataaaggtccagcaccagcatcagcatcagccaccactgaagaaact 60

                                                                       
Query: 125 aaagttgaagaagcagcagcagttgttgtagcatctgaacaaaccaccaccgaagaaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaagttgaagaagcagcagcagttgttgtagcatctgaacaaaccaccaccgaagaaact 120

                                                                       
Query: 185 accaaaacacatgatattagagcaaatttagaagcagttattaaaggtattcaagataat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accaaaacacatgatattagagcaaatttagaagcagttattaaaggtattcaagataat 180

                                                                       
Query: 245 aagattttagaagtatttgaaaaatactatcatgacgaaattgttatgtttgaaaaaggt 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagattttagaagtntttgaaaaatactatcatgacgaaattgttatgtttgaaaaaggt 240

                                                                       
Query: 305 gattcaaccaatcgtgttggtaaagctgccaaccgtgctgctgaagaagcttttgtcagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattcaaccaatcgtgttggtaaagctgccaaccgtgctgctgaagaagcttttgtcagt 300

                                                                       
Query: 365 aacgcaactattcatgaagctaaagttttaaaaacaattgtcgatggtgaaaattcagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacgcaactattcatgaagctaaagttttaaaaacaattgtcgatggtgaaaattcagca 360

                                                                       
Query: 425 tatgaaatgtttatggatttcacttatggtggtaaccgtgttcaaaaaactcaatgggca 484
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 361 tatgaaatgtttatggatttcacttatggnggtaaccgngttcaaaaaactcantgggca 420

                                                 
Query: 485 ttccaacaatggtcaaatggtttaattattaaagaaga 522
           |||||||| |||| || |||||||||||||||||||||
Sbjct: 421 ttccaacantggtnaantggtttaattattaaagaaga 458


 Score =  161 bits (81), Expect = 2e-39
 Identities = 122/136 (89%)
 Strand = Plus / Plus

                                                                       
Query: 626 catgatattagagcaaatttagattcaattattaaaggtattcaagaaggtagaatttta 685
           |||||||||||||||||||||||  || |||||||||||||||||||   ||  ||||||
Sbjct: 130 catgatattagagcaaatttagaagcagttattaaaggtattcaagataataagatttta 189

                                                                       
Query: 686 gaagtatttgataaatattatcatgatgaaatcgttatgtttgaaaatggtgattcaacc 745
           ||||| ||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 190 gaagtntttgaaaaatactatcatgacgaaattgttatgtttgaaaaaggtgattcaacc 249

                           
Query: 746 aatcgtgttggtaaag 761
           ||||||||||||||||
Sbjct: 250 aatcgtgttggtaaag 265


 Score = 85.7 bits (43), Expect = 9e-17
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 570 ccactgaagaaactaaagttgaagaagcagcagcagttgttgt 612
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ccactgaagaaactaaagttgaagaagcagcagcagttgttgt 89


 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 11  caaaaaactcaatgggcattccaacaatggtcaaatggtttagtaattaaagaaga 66
           ||||||||||| |||||||||||||| |||| || ||||||| | |||||||||||
Sbjct: 403 caaaaaactcantgggcattccaacantggtnaantggtttaattattaaagaaga 458


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 857 tatgaaatgtatatggatttcacttatggtggt 889
           |||||||||| |||||||||||||||||| |||
Sbjct: 361 tatgaaatgtttatggatttcacttatggnggt 393


>Contig-U06766-1 (Contig-U06766-1Q) /CSM_Contig/Contig-U06766-1Q.Seq.d
          Length = 402

 Score =  424 bits (214), Expect = e-119
 Identities = 292/318 (91%)
 Strand = Plus / Plus

                                                                       
Query: 640 aaatttagattcaattattaaaggtattcaagaaggtagaattttagaagtatttgataa 699
           |||||||||  |||| ||||||||||| ||||||  |||||| |||||||||||||||||
Sbjct: 11  aaatttagaagcaatcattaaaggtatccaagaaaatagaatcttagaagtatttgataa 70

                                                                       
Query: 700 atattatcatgatgaaatcgttatgtttgaaaatggtgattcaaccaatcgtgttggtaa 759
           |||||| ||| ||||  | || |||| |||||| |||||||||||||| |||||||||||
Sbjct: 71  atattaccataatgatgttgtaatgtatgaaaaaggtgattcaaccaaccgtgttggtaa 130

                                                                       
Query: 760 agaagccaatagaaaagccgaagaatcatttgttaataatgcaaccattcatgaagcaaa 819
           |||||||||| | ||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct: 131 agaagccaatcgtaaagctgaagaatcattcgtaaacaatgcaaccattcatgaagcaaa 190

                                                                       
Query: 820 attaaccaaaatcttagtcgatggtaataacactgcctatgaaatgtatatggatttcac 879
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 attaaccaaaatcttagtcgatggtaataacactgcctatgaaatgtatatggatttcac 250

                                                                       
Query: 880 ttatggtggtcacaaagttgctaaaactcaatgggctttacaagaatggaaagatggtaa 939
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttatggtggtaataaagttgctaaaactcaatgggctttacaagaatggaaagatggtaa 310

                             
Query: 940 agtcatcaaagaagaatt 957
           | || |||||||||||||
Sbjct: 311 aatcgtcaaagaagaatt 328


 Score =  119 bits (60), Expect = 6e-27
 Identities = 204/252 (80%)
 Strand = Plus / Plus

                                                                       
Query: 208 aaatttagaagcagttattaaaggtattcaagataataagattttagaagtatttgaaaa 267
           ||||||||||||| | ||||||||||| ||||| ||||  || |||||||||||||| ||
Sbjct: 11  aaatttagaagcaatcattaaaggtatccaagaaaatagaatcttagaagtatttgataa 70

                                                                       
Query: 268 atactatcatgacgaaattgttatgtttgaaaaaggtgattcaaccaatcgtgttggtaa 327
           ||| || ||| | ||  |||| |||| ||||||||||||||||||||| |||||||||||
Sbjct: 71  atattaccataatgatgttgtaatgtatgaaaaaggtgattcaaccaaccgtgttggtaa 130

                                                                       
Query: 328 agctgccaaccgtgctgctgaagaagcttttgtcagtaacgcaactattcatgaagctaa 387
           ||  ||||| |||   ||||||||| | || || |  || ||||| ||||||||||| ||
Sbjct: 131 agaagccaatcgtaaagctgaagaatcattcgtaaacaatgcaaccattcatgaagcaaa 190

                                                                       
Query: 388 agttttaaaaacaattgtcgatggtgaaaattcagcatatgaaatgtttatggatttcac 447
           | |    ||||   | ||||||||| | ||  | || |||||||||| ||||||||||||
Sbjct: 191 attaaccaaaatcttagtcgatggtaataacactgcctatgaaatgtatatggatttcac 250

                       
Query: 448 ttatggtggtaa 459
           ||||||||||||
Sbjct: 251 ttatggtggtaa 262


 Score = 30.2 bits (15), Expect = 4.6
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                      
Query: 14  aaaactcaatgggcattccaacaatgg 40
           |||||||||||||| || ||| |||||
Sbjct: 273 aaaactcaatgggctttacaagaatgg 299


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,137
Number of Sequences: 6905
Number of extensions: 12137
Number of successful extensions: 1381
Number of sequences better than 10.0: 138
length of query: 1059
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1043
effective length of database: 5,564,391
effective search space: 5803659813
effective search space used: 5803659813
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 8
Homology vs DNA 
Query= Contig-U03890-1 (Contig-U03890-1Q) /CSM_Contig/Contig-U03890-1Q.Seq.d
         (1059 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060885) Dictyostelium discoideum slug cDNA, clone SLB884.      787   0.0    2
(AU034073) Dictyostelium discoideum slug cDNA, clone SLB884.     1039   0.0    1
(AU267852) Dictyostelium discoideum vegetative cDNA clone:VS...   866   0.0    1
(C92920) Dictyostelium discoideum slug cDNA, clone SSF762.        466   e-127  1
(AU265985) Dictyostelium discoideum vegetative cDNA clone:VS...   458   e-124  1
(AU265986) Dictyostelium discoideum vegetative cDNA clone:VS...   335   2e-87  1
(AU268459) Dictyostelium discoideum vegetative cDNA clone:VS...   230   2e-79  2
(AU268460) Dictyostelium discoideum vegetative cDNA clone:VS...   200   4e-76  3
(AU073036) Dictyostelium discoideum slug cDNA, clone SSF762.      222   2e-53  1
(AU284474) Dictyostelium discoideum gamete cDNA clone:FC-AY1...    42   2e-04  2
(AU284296) Dictyostelium discoideum gamete cDNA clone:FC-AJ0...    42   2e-04  2
(AU061806) Dictyostelium discoideum slug cDNA, clone SLG160.       42   2e-04  2
(AU285040) Dictyostelium discoideum gamete cDNA clone:FCL-AB...    42   2e-04  2
(AU039674) Dictyostelium discoideum slug cDNA, clone SLG160.       42   2e-04  2
(AU284434) Dictyostelium discoideum gamete cDNA clone:FC-AV0...    42   2e-04  2
(BJ358114) Dictyostelium discoideum cDNA clone:dda65e21, 3' ...    42   2e-04  2
(BJ446622) Dictyostelium discoideum cDNA clone:ddv63f08, 3' ...    42   2e-04  2
(CX712409) RTPQ1_2_H02.b2_A032 Roots treated with paraquat P...    40   0.003  2
(FE267652) CAZO6255.fwd CAZO Naegleria gruberi Flagellate St...    36   0.005  3
(FE267626) CAZO6239.fwd CAZO Naegleria gruberi Flagellate St...    36   0.006  3
(FE262567) CAZO2699.fwd CAZO Naegleria gruberi Flagellate St...    36   0.006  3
(FE257686) CAPH6753.rev CAPH Naegleria gruberi amoeba stage ...    36   0.007  3
(FE257096) CAPH6447.fwd CAPH Naegleria gruberi amoeba stage ...    36   0.007  3
(FE257687) CAPH6753.fwd CAPH Naegleria gruberi amoeba stage ...    36   0.007  3
(DR438063) ACAC-aac10a22.g1 Hydra EST UCI 7 Hydra magnipapil...    40   0.010  2
(AC210617) Zea mays chromosome 4 clone CH201-206O3; ZMMBBc02...    38   0.11   2
(AC209408) Zea mays chromosome 4 clone ZMMBBb-627P9; ZMMBBb0...    38   0.11   2
(CU201099) Equus caballus GSS, BAC clone CH241-368B6, T7 end...    36   0.18   3
(BZ230641) CH230-426H5.TV CHORI-230 Segment 2 Rattus norvegi...    40   0.19   2
(AC233438) Solanum tuberosum chromosome 5 clone RH082J06, **...    46   0.19   6
(DT436143) JGI_CABJ11627.rev NIH_XGC_tropSki1 Xenopus (Silur...    34   0.32   3
(DT420885) JGI_CABJ2941.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   0.43   3
(EJ818015) 1093017525135 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.53   2
(DV434876) NADCY17TR Aedes aegypti infected with Dengue viru...    34   0.55   3
(EC825338) SME00001708 esmbsro2 Sawyeria marylandensis cDNA,...    36   0.57   2
(EY321098) CAWX7720.rev CAWX Helobdella robusta Primary Earl...    44   0.59   2
(DV434875) NADCY17TF Aedes aegypti infected with Dengue viru...    34   0.59   3
(EJ966721) 1093022048615 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.62   2
(EJ423967) 1093012250664 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.68   2
(CT010467) Mouse DNA sequence from clone RP23-81C12 on chrom...    48   0.70   1
(AC123740) Mus musculus chromosome 17, clone RP24-94I20, com...    48   0.70   1
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    48   0.70   1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    48   0.70   1
(AC008361) Drosophila melanogaster, chromosome 3R, region 90...    48   0.70   1
(AC097652) Homo sapiens BAC clone RP11-138B4 from 4, complet...    48   0.70   1
(AC005036) Homo sapiens BAC clone RP11-364H22 from 2, comple...    48   0.70   1
(AC079012) Homo sapiens chromosome 4 clone RP11-264F11 map 4...    48   0.70   1
(AC018090) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    48   0.70   1
(CR256739) Reverse strand read from insert in 5'HPRT inserti...    48   0.70   1
(CI199083) Oryza sativa Japonica Group cDNA, clone: 037-M003...    48   0.70   1
(EV144459) 0210393 Brassica napus Very early anther Brassica...    48   0.70   1
(EV144066) 0210000 Brassica napus Very early anther Brassica...    48   0.70   1
(EV029317) BNSCS2CT_UP_185_H09_02MAY2007_065 Brassica napus ...    48   0.70   1
(CU695240) Ralstonia solanacearum strain MolK2 Genome Draft.       48   0.70   1
(EJ955975) 1093018972898 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.70   2
(EJ496852) 1095403580145 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.72   2
(CT860814) Oryza sativa Indica Group EST sequence:OSIGCEA015...    34   0.74   3
(AC216704) Solanum lycopersicum chromosome 2 clone C02HBa023...    38   0.80   4
(CJ505173) Triticum aestivum cDNA clone whfl7l08 5', Y.Ogiha...    38   0.91   2
(AC098037) Rattus norvegicus clone CH230-90F19, *** SEQUENCI...    42   0.99   3
(CJ500796) Triticum aestivum cDNA clone whfl39i11 5', Y.Ogih...    38   1.2    2
(CJ495013) Triticum aestivum cDNA clone whfl16c08 5', Y.Ogih...    38   1.3    2
(AC226249) Zea mays chromosome 7 clone CH201-111P6; ZMMBBc01...    42   1.3    4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.4    2
(AC103083) Rattus norvegicus clone CH230-227E10, WORKING DRA...    40   1.4    5
(CJ500572) Triticum aestivum cDNA clone whfl38j11 5', Y.Ogih...    38   1.4    2
(AC210829) Zea mays chromosome 10 clone CH201-464C15; ZMMBBc...    34   1.4    2
(AC204412) Zea mays chromosome 10 clone CH201-288B8; ZMMBBc0...    34   1.4    2
(CV649554) EST928307 Field isolate cDNA library Plasmodium v...    36   1.4    3
(CJ499713) Triticum aestivum cDNA clone whfl34l06 5', Y.Ogih...    38   1.4    2
(CJ499641) Triticum aestivum cDNA clone whfl34g03 5', Y.Ogih...    38   1.5    2
(FG130302) a673 Periplaneta americana Whole Organism cDNA Li...    44   1.5    2
(CJ505296) Triticum aestivum cDNA clone whfl8d19 5', Y.Ogiha...    38   1.6    2
(CJ502951) Triticum aestivum cDNA clone whfl48i17 5', Y.Ogih...    38   1.6    2
(CJ500564) Triticum aestivum cDNA clone whfl38i24 5', Y.Ogih...    38   1.6    2
(CJ504622) Triticum aestivum cDNA clone whfl5a18 5', Y.Ogiha...    38   1.6    2
(CJ504621) Triticum aestivum cDNA clone whfl5a16 5', Y.Ogiha...    38   1.6    2
(FG985655) CF_WO0_83G01_SP6 Copepod Whole Organism, Normaliz...    38   1.7    2
(FG130664) a1081 Periplaneta americana Whole Organism cDNA L...    44   1.8    2
(AM053348) Epidinium ecaudatum EST, clone Eec02_A02.               42   1.8    2
(AM435707) Vitis vinifera contig VV78X072720.2, whole genome...    38   1.9    3
(BX005196) Zebrafish DNA sequence from clone CH211-142M16 in...    40   1.9    5
(CJ494503) Triticum aestivum cDNA clone whfl13p12 5', Y.Ogih...    38   1.9    2
(AZ637237) 1M0496F02R Mouse 10kb plasmid UUGC1M library Mus ...    42   1.9    2
(CJ499454) Triticum aestivum cDNA clone whfl33j15 5', Y.Ogih...    38   1.9    2
(AG283937) Mus musculus molossinus DNA, clone:MSMg01-056I20....    40   2.2    2
(AC111402) Rattus norvegicus clone CH230-119P6, *** SEQUENCI...    36   2.2    8
(AC130103) Rattus norvegicus  BAC CH230-41L20 (Children's Ho...    34   2.2    7
(AC102821) Mus musculus chromosome 3, clone RP24-179A5, comp...    38   2.4    6
(AC219493) Bos taurus clone CH240-332I21, WORKING DRAFT SEQU...    40   2.7    3
(BC156131) Synthetic construct Homo sapiens clone IMAGE:1000...    46   2.8    1
(AC188608) Mus musculus BAC clone RP23-212C22 from chromosom...    46   2.8    1
(AC163208) Mus musculus chromosome 18, clone RP24-340O19, co...    46   2.8    1
(AC159978) Mus musculus chromosome 15, clone RP24-173F4, com...    46   2.8    1
(AC149221) Mus musculus BAC clone RP23-402P22 from chromosom...    46   2.8    1
(AC134603) Mus musculus BAC clone RP23-246L24 from chromosom...    46   2.8    1
(AC116729) Mus musculus chromosome 3, clone RP23-346I1, comp...    46   2.8    1
(AC115878) Mus musculus chromosome 15, clone RP24-358G9, com...    46   2.8    1
(AC111010) Mus musculus BAC clone RP23-419L21 from chromosom...    46   2.8    1
(AC103351) Mus musculus chromosome 18, clone RP23-406A11, co...    46   2.8    1
(AP006494) Cyanidioschyzon merolae DNA, chromosome 12, compl...    46   2.8    1
(CS118339) Sequence 386 from Patent WO2005054508.                  46   2.8    1
(AY587895) Plasmodium falciparum merozoite surface protein 2...    46   2.8    1
(AL358815) Human DNA sequence from clone RP11-526J3 on chrom...    46   2.8    1
(AF153416) Homo sapiens FERM-containing protein (CG1) mRNA, ...    46   2.8    1
(AB209187) Homo sapiens mRNA for erythrocyte membrane protei...    46   2.8    1
(AC141095) Rattus norvegicus clone CH230-415G9, WORKING DRAF...    46   2.8    1
(AC125931) Rattus norvegicus clone CH230-50C3, WORKING DRAFT...    46   2.8    1
(AC107254) Rattus norvegicus clone CH230-74B18, *** SEQUENCI...    46   2.8    1
(AC105558) Rattus norvegicus clone CH230-226A13, *** SEQUENC...    46   2.8    1
(AC097151) Rattus norvegicus clone CH230-215M16, *** SEQUENC...    46   2.8    1
(AC096906) Rattus norvegicus clone CH230-113I9, *** SEQUENCI...    46   2.8    1
(AC233413) Solanum tuberosum chromosome 5 clone RH061J07, **...    46   2.8    1
(AC217423) Zea mays chromosome 1 clone ZMMBBb-625A16; ZMMBBb...    46   2.8    1
(AC215677) Zea mays chromosome 4 clone CH201-15P5; ZMMBBc001...    46   2.8    1
(AC212228) Zea mays chromosome 7 clone CH201-67K13; ZMMBBc00...    46   2.8    1
(AC209798) Zea mays chromosome 4 clone CH201-240O3; ZMMBBc02...    46   2.8    1
(AC208722) Zea mays chromosome 8 clone CH201-355H16; ZMMBBc0...    46   2.8    1
(AC202855) Zea mays chromosome 4 clone CH201-395I20; ZMMBBc0...    46   2.8    1
(AC198779) Zea mays chromosome 7 clone CH201-289I8; ZMMBBc02...    46   2.8    1
(AC197360) Zea mays chromosome 10 clone CH201-285N11; ZMMBBc...    46   2.8    1
(AC195208) Zea mays chromosome 10 clone CH201-482D9; ZMMBBc0...    46   2.8    1
(AC191795) Zea mays chromosome 4 clone ZMMBBb-211J23; ZMMBBb...    46   2.8    1
(AC190630) Zea mays chromosome 10 clone CH201-160K19; ZMMBBc...    46   2.8    1
(AC186630) Zea mays chromosome 1 clone CH201-210O17; ZMMBBc0...    46   2.8    1
(AC167182) Mus musculus chromosome 7 clone RP23-32J4 map 7, ...    46   2.8    1
(BH058028) RPCI-24-354N4.TV RPCI-24 Mus musculus genomic clo...    46   2.8    1
(AZ284221) RPCI-23-128F14.TJ RPCI-23 Mus musculus genomic cl...    46   2.8    1
(AZ252429) RPCI-23-466P11.TJB RPCI-23 Mus musculus genomic c...    46   2.8    1
(AZ246464) RPCI-23-57P13.TJ RPCI-23 Mus musculus genomic clo...    46   2.8    1
(AZ112993) RPCI-23-13D13.TJ RPCI-23 Mus musculus genomic clo...    46   2.8    1
(ER759573) SB_BBc32-K02.F SB_BBc Sorghum bicolor genomic 5',...    46   2.8    1
(ER717457) SB_BBc128-K08.F SB_BBc Sorghum bicolor genomic 5'...    46   2.8    1
(ER685893) SB_BBc283-I15.R SB_BBc Sorghum bicolor genomic 3'...    46   2.8    1
(ER674945) SB_BBc213-I04.R SB_BBc Sorghum bicolor genomic 3'...    46   2.8    1
(EK203429) 1095460065426 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.8    1
(EI956215) SB_BBc72-P17.R SB_BBc Sorghum bicolor genomic 3',...    46   2.8    1
(DX786742) 2655006 VV07 Ustilago maydis genomic clone 116066...    46   2.8    1
(DX785867) 2623338 VV07 Ustilago maydis genomic clone 116538...    46   2.8    1
(DX771593) 2610312 VV07 Ustilago maydis genomic clone 111392...    46   2.8    1
(DX769455) 2661459 VV07 Ustilago maydis genomic clone 116064...    46   2.8    1
(DX741266) 2189253 VV03 Ustilago maydis genomic clone 892428...    46   2.8    1
(DX721967) 2308468 VV03 Ustilago maydis genomic clone 100252...    46   2.8    1
(DX719370) 2189379 VV03 Ustilago maydis genomic clone 892475...    46   2.8    1
(DX667465) 1951995 VV02 Ustilago maydis genomic clone 800854...    46   2.8    1
(DX665563) 2299793 VV02 Ustilago maydis genomic clone 943764...    46   2.8    1
(DX649619) 1913343 VV02 Ustilago maydis genomic clone 784165...    46   2.8    1
(DX642800) 1952236 VV02 Ustilago maydis genomic clone 800580...    46   2.8    1
(DU188255) 1098574169724 CHORI-243 Ovis aries genomic clone ...    46   2.8    1
(CZ699743) OC__Ba0014L11.f OC__Ba Oryza coarctata genomic cl...    46   2.8    1
(CW043079) 104_277_10507588_114_30253 Sorghum methylation fi...    46   2.8    1
(CW036349) 104_267_10503709_114_30374 Sorghum methylation fi...    46   2.8    1
(CW036347) 104_267_10503708_114_30374 Sorghum methylation fi...    46   2.8    1
(AG914217) Drosophila auraria DNA, clone: DAB1-010H15.F.fa, ...    46   2.8    1
(AG910971) Drosophila auraria DNA, clone: DAB1-004M07.F.fa, ...    46   2.8    1
(CG837609) ZMMBBc0217I12f ZMMBBc (EcoRI) Zea mays subsp. may...    46   2.8    1
(CG702877) ZMMBBc0114J15r ZMMBBc (EcoRI) Zea mays subsp. may...    46   2.8    1
(CC656540) OGWEY73TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    46   2.8    1
(DW710040) EST033521 Trichophyton rubrum cDNA library 8 Tric...    46   2.8    1
(DW703138) EST026619 Trichophyton rubrum cDNA library 7 Tric...    46   2.8    1
(DW697470) EST020951 Trichophyton rubrum cDNA library 6 Tric...    46   2.8    1
(DW697281) EST020762 Trichophyton rubrum cDNA library 6 Tric...    46   2.8    1
(DW691333) EST014814 Trichophyton rubrum cDNA library 2 Tric...    46   2.8    1
(DW689155) EST012636 Trichophyton rubrum cDNA library 2 Tric...    46   2.8    1
(DW688950) EST012431 Trichophyton rubrum cDNA library 2 Tric...    46   2.8    1
(DW688911) EST012392 Trichophyton rubrum cDNA library 2 Tric...    46   2.8    1
(DW688682) EST012163 Trichophyton rubrum cDNA library 2 Tric...    46   2.8    1
(DW687853) EST011334 Trichophyton rubrum cDNA library 2 Tric...    46   2.8    1
(DW687223) EST010704 Trichophyton rubrum cDNA library 1 Tric...    46   2.8    1
(DW483048) GH_RMIRS_039_G02_004_F Cotton Normalized Library ...    46   2.8    1
(DV631946) EST1100542 Melon subtraction library 8 Cucumis me...    46   2.8    1
(DN698234) CLJ16-D07.y1d-s SHGC-CLJ Gasterosteus aculeatus c...    46   2.8    1
(DK282135) Drosophila auraria mRNA, adult full-length cDNA c...    46   2.8    1
(AM725674) Cucumis melo subsp. melo EST, clone HS_08-C01-M13R.     46   2.8    1
(AM725601) Cucumis melo subsp. melo EST, clone HS_37-F08-M13R.     46   2.8    1
(DA220023) Homo sapiens cDNA clone BRAWH3011666, 5' end, mRN...    46   2.8    1
(AL599957) Homo sapiens mRNA; EST DKFZp313J0331_r1  (from cl...    46   2.8    1
(AJ883802) Trichophyton rubrum EST, clone TrMZD04ACJ.              46   2.8    1
(AJ882441) Trichophyton rubrum EST, clone TrMZH02AAX.              46   2.8    1
(AJ881350) Trichophyton rubrum EST, clone TrMZA09AAG.              46   2.8    1
(CF888957) amastc-994 TcAM Trypanosoma cruzi cDNA clone 6G7 ...    46   2.8    1
(CF873249) tric005xa12.b11 T.reesei mycelial culture, Versio...    46   2.8    1
(CF873163) tric004xk16.b11 T.reesei mycelial culture, Versio...    46   2.8    1
(CF870125) tric021xj17.b1 T.reesei mycelial culture, Version...    46   2.8    1
(CF867180) tric010xc10.b1 T.reesei mycelial culture, Version...    46   2.8    1
(CF866096) tric005xa12.b1 T.reesei mycelial culture, Version...    46   2.8    1
(CF866032) tric004xk16.b1 T.reesei mycelial culture, Version...    46   2.8    1
(CB900291) tric021xj17 T.reesei mycelial culture, Version 3 ...    46   2.8    1
(CB897197) tric010xc10 T.reesei mycelial culture, Version 3 ...    46   2.8    1
(CB896055) tric005xa12 T.reesei mycelial culture, Version 3 ...    46   2.8    1
(CB895984) tric004xk16 T.reesei mycelial culture, Version 3 ...    46   2.8    1
(BE036584) MP01F11 MP Mesembryanthemum crystallinum cDNA 5' ...    46   2.8    1
(CP000547) Burkholderia mallei NCTC 10247 chromosome II, com...    46   2.8    1
(CP000545) Burkholderia mallei NCTC 10229 chromosome II, com...    46   2.8    1
(CP000011) Burkholderia mallei ATCC 23344 chromosome 2, comp...    46   2.8    1
(BX571966) Burkholderia pseudomallei strain K96243, chromoso...    46   2.8    1
(AC115674) Rattus norvegicus clone CH230-71M10, *** SEQUENCI...    42   2.8    4
(ER581056) 1093015839756 Global-Ocean-Sampling_GS-36-01-01-2...    36   3.1    2
(AC160775) Bos taurus clone CH240-95P11, WORKING DRAFT SEQUE...    40   3.5    6
(AC126075) Rattus norvegicus clone CH230-476O5, *** SEQUENCI...    34   3.7    6
(DT423265) JGI_CABJ4240.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   4.2    3
(AC008194) Drosophila melanogaster clone BACR49A05, complete...    36   4.2    6
(AC097546) Rattus norvegicus clone CH230-76O1, *** SEQUENCIN...    36   4.3    5
(AC172322) Strongylocentrotus purpuratus clone R3-14G24, WOR...    38   4.6    5
(AC167937) Sorex araneus clone SA_Ba-189H2, WORKING DRAFT SE...    34   5.2    2
(BX927333) Zebrafish DNA sequence from clone CH211-69C15 in ...    34   5.2    2
(AC168967) Sorex araneus clone SA_Ba-38O3, WORKING DRAFT SEQ...    34   5.3    2
(AC186776) Trichinella spiralis chromosome UNK clone TS195-3...    32   5.4    2
(DT606942) ACAG-aaa50g07.g1 Hydra_EST_UCI-9 Hydra magnipapil...    38   5.6    2
(AC190871) Zea mays chromosome 2 clone ZMMBBb-108G24; ZMMBBb...    44   5.7    4
(AL929230) Mouse DNA sequence from clone RP23-306G16 on chro...    34   6.8    7
(CZ272639) ZMMBF0053A07f ZMMBF Zea mays genomic clone ZMMBF0...    34   6.9    2
(EE727923) MPB034.C21_M06 MPB03 Grosmannia clavigera cDNA cl...    32   6.9    2
(DE852245) Macropus eugenii DNA, BAC clone: MEB1-015N12_R, 3...    34   6.9    2
(DV422488) NADYE38TR Aedes aegypti infected with Dengue viru...    32   7.0    3
(BX629072) Anopheles gambiae EST, clone ANGNP1424B03T7.            38   7.7    2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    40   7.9    13
(EC825949) SME00007684 esmbsro2 Sawyeria marylandensis cDNA,...    34   8.2    2
(DR879247) JGI_CABJ623.fwd NIH_XGC_tropSki1 Xenopus (Siluran...    34   8.2    2
(AC218175) Zea mays chromosome 5 clone CH201-5D17; ZMMBBc000...    34   8.4    5
(DR880828) JGI_CABJ1486.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   8.4    2
(DT435461) JGI_CABJ11254.rev NIH_XGC_tropSki1 Xenopus (Silur...    34   8.7    2
(ER380033) 1094338642705 Global-Ocean-Sampling_GS-34-01-01-1...    34   8.7    2
(DT425864) JGI_CABJ6035.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   8.8    2
(DV417966) NADZA63TR Aedes aegypti infected with Dengue viru...    32   8.8    3
(DT419959) JGI_CABJ2440.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   8.9    2
(DR879246) JGI_CABJ623.rev NIH_XGC_tropSki1 Xenopus (Siluran...    34   8.9    2
(DT430040) JGI_CABJ8326.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   9.0    2
(CQ574698) Sequence 2456 from Patent WO0171042.                    32   9.1    3
(DT427648) JGI_CABJ7028.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   9.2    2
(DT432028) JGI_CABJ9402.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.2    2
(DT435641) JGI_CABJ11351.rev NIH_XGC_tropSki1 Xenopus (Silur...    34   9.2    2
(DT428842) JGI_CABJ7674.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.2    2
(AC121580) Mus musculus BAC clone RP23-255J21 from 9, comple...    40   9.3    3
(DR880829) JGI_CABJ1486.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.3    2
(DT420230) JGI_CABJ2586.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.3    2
(DT421694) JGI_CABJ3373.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.3    2
(DT431659) JGI_CABJ9202.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   9.4    2
(DT422605) JGI_CABJ3879.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   9.4    2
(DT420884) JGI_CABJ2941.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   9.5    2
(DT436224) JGI_CABJ11670.rev NIH_XGC_tropSki1 Xenopus (Silur...    34   9.5    2
(BB036024) Mus musculus 13 days embryo forelimb cDNA, RIKEN ...    40   9.5    2
(DT427649) JGI_CABJ7028.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.5    2
(DT423266) JGI_CABJ4240.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.6    2
(DT428841) JGI_CABJ7674.rev NIH_XGC_tropSki1 Xenopus (Silura...    34   9.6    2
(AC110323) Rattus norvegicus clone CH230-254A20, WORKING DRA...    40   9.7    3
(DT422606) JGI_CABJ3879.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.7    2
(DT431660) JGI_CABJ9202.fwd NIH_XGC_tropSki1 Xenopus (Silura...    34   9.7    2

>(AU060885) Dictyostelium discoideum slug cDNA, clone SLB884.
          Length = 636

 Score =  787 bits (397), Expect(2) = 0.0
 Identities = 448/465 (96%)
 Strand = Plus / Plus


Query: 347 gaagaagcttttgtcagtaacgcaactattcatgaagctaaagttttaaaaacaattgtc 406
           |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 172 gaagaagcctttgttagtaatgcaactattcatgaagctaaagttttaaaaactatcgtt 231


Query: 407 gatggtgaaaattcagcatatgaaatgtttatggatttcacttatggtggtaaccgtgtt 466
           |||||||| ||| | || ||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 232 gatggtgataataccgcttatgaaatgtttatggatttcacttatggtggtcatcgtgtt 291


Query: 467 caaaaaactcaatgggcattccaacaatggtcaaatggtttaattattaaagaagaattc 526
           |||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 292 caaaaaactcaatggtgtttccaacaatggtctaatggtttaattattaaagaagaattc 351


Query: 527 aacgaaaataaaggtccagctccagctgcaactccaacaccagccactgaagaaactaaa 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aacgaaaataaaggtccagctccagctgcaactccaacaccagccactgaagaaactaaa 411


Query: 587 gttgaagaagcagcagcagttgttgttccaccagttactcatgatattagagcaaattta 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gttgaagaagcagcagcagttgttgttccaccagttactcatgatattagagcaaattta 471


Query: 647 gattcaattattaaaggtattcaagaaggtagaattttagaagtatttgataaatattat 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gattcaattattaaaggtattcaagaaggtagaattttagaagtatttgataaatattat 531


Query: 707 catgatgaaatcgttatgtttgaaaatggtgattcaaccaatcgtgttggtaaagaagcc 766
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 catgatgaaatcgttatgtttgaaaatggtgattcaaccaatcgtgttggtaaagaagcc 591


Query: 767 aatagaaaagccgaagaatcatttgttaataatgcaaccattcat 811
           |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 592 aatagaaaagccgaagaatcatttgttaataatgcaactattcat 636

 Score =  289 bits (146), Expect(2) = 0.0
 Identities = 152/154 (98%)
 Strand = Plus / Plus


Query: 176 gaagaaactaccaaaacacatgatattagagcaaatttagaagcagttattaaaggtatt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaagaaactaccaaaacacatgatattagagcaaatttagaagcagttattaaaggtatt 60


Query: 236 caagataataagattttagaagtatttgaaaaatactatcatgacgaaattgttatgttt 295
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61  caagataataagattttagaagtatttgaaaaatactatcatgatgaaattgttatgttt 120


Query: 296 gaaaaaggtgattcaaccaatcgtgttggtaaag 329
           ||||| ||||||||||||||||||||||||||||
Sbjct: 121 gaaaatggtgattcaaccaatcgtgttggtaaag 154

 Score =  123 bits (62), Expect(4) = 5e-88
 Identities = 77/82 (93%)
 Strand = Plus / Plus


Query: 248 attttagaagtatttgaaaaatactatcatgacgaaattgttatgtttgaaaaaggtgat 307
           ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct: 505 attttagaagtatttgataaatattatcatgatgaaatcgttatgtttgaaaatggtgat 564


Query: 308 tcaaccaatcgtgttggtaaag 329
           ||||||||||||||||||||||
Sbjct: 565 tcaaccaatcgtgttggtaaag 586

 Score =  117 bits (59), Expect(4) = 5e-88
 Identities = 86/95 (90%)
 Strand = Plus / Plus


Query: 2   catcgtgtccaaaaaactcaatgggcattccaacaatggtcaaatggtttagtaattaaa 61
           |||||||| |||||||||||||||   |||||||||||||| ||||||||| | ||||||
Sbjct: 283 catcgtgttcaaaaaactcaatggtgtttccaacaatggtctaatggtttaattattaaa 342


Query: 62  gaagaattcaatgaaaataaaggtccagcaccagc 96
           ||||||||||| ||||||||||||||||| |||||
Sbjct: 343 gaagaattcaacgaaaataaaggtccagctccagc 377

 Score = 85.7 bits (43), Expect(4) = 5e-88
 Identities = 43/43 (100%)
 Strand = Plus / Plus


Query: 111 ccactgaagaaactaaagttgaagaagcagcagcagttgttgt 153
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccactgaagaaactaaagttgaagaagcagcagcagttgttgt 437

 Score = 69.9 bits (35), Expect(4) = 5e-88
 Identities = 44/47 (93%)
 Strand = Plus / Plus


Query: 194 catgatattagagcaaatttagaagcagttattaaaggtattcaaga 240
           |||||||||||||||||||||||  || |||||||||||||||||||
Sbjct: 451 catgatattagagcaaatttagattcaattattaaaggtattcaaga 497

 Score =  208 bits (105), Expect(3) = 5e-78
 Identities = 129/137 (94%)
 Strand = Plus / Plus


Query: 680 attttagaagtatttgataaatattatcatgatgaaatcgttatgtttgaaaatggtgat 739
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 73  attttagaagtatttgaaaaatactatcatgatgaaattgttatgtttgaaaatggtgat 132


Query: 740 tcaaccaatcgtgttggtaaagaagccaatagaaaagccgaagaatcatttgttaataat 799
           ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||
Sbjct: 133 tcaaccaatcgtgttggtaaagaggccaatagaaaagccgaagaagcctttgttagtaat 192


Query: 800 gcaaccattcatgaagc 816
           ||||| |||||||||||
Sbjct: 193 gcaactattcatgaagc 209

 Score = 69.9 bits (35), Expect(3) = 5e-78
 Identities = 44/47 (93%)
 Strand = Plus / Plus


Query: 626 catgatattagagcaaatttagattcaattattaaaggtattcaaga 672
           |||||||||||||||||||||||  || |||||||||||||||||||
Sbjct: 19  catgatattagagcaaatttagaagcagttattaaaggtattcaaga 65

 Score = 65.9 bits (33), Expect(3) = 5e-78
 Identities = 48/53 (90%)
 Strand = Plus / Plus


Query: 839 gatggtaataacactgcctatgaaatgtatatggatttcacttatggtggtca 891
           |||||| |||| || || |||||||||| ||||||||||||||||||||||||
Sbjct: 232 gatggtgataataccgcttatgaaatgtttatggatttcacttatggtggtca 284

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,343,764,767
Number of extensions: 85497712
Number of successful extensions: 7112571
Number of sequences better than 10.0: 249
Length of query: 1059
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1035
Effective length of database: 99,340,224,878
Effective search space: 102817132748730
Effective search space used: 102817132748730
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03890-1 (Contig-U03890-1Q) /CSM_Contig/Contig-U03890-1Q.Seq.d
         (1059 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001344_2686(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    71   7e-11
CP000348_1151(CP000348|pid:none) Leptospira borgpetersenii serov...    64   9e-09
AE016823_1999(AE016823|pid:none) Leptospira interrogans serovar ...    63   2e-08
AE010300_1738(AE010300|pid:none) Leptospira interrogans serovar ...    61   6e-08
CP000083_2430(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    47   9e-04
CP000927_3161(CP000927|pid:none) Caulobacter sp. K31, complete g...    47   0.001
CP001635_2320(CP001635|pid:none) Variovorax paradoxus S110 chrom...    42   0.037
BA000012_5824(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...    39   0.24
BA000040_2395(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    39   0.31

>CP001344_2686(CP001344|pid:none) Cyanothece sp. PCC 7425, complete
           genome.
          Length = 121

 Score = 70.9 bits (172), Expect = 7e-11
 Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
 Frame = +2

Query: 629 DIRANLDSIIKGIQEGRILEVFDKYYHDEIVMFENGDSTNRVGKEANRKAEESFVNNATI 808
           +++AN + I   I +G+ +E F+KYY +++VM EN ++   +GK ANR+ E  F    T
Sbjct: 7   NLQANFEDIQNLIAQGKAMEAFEKYYGEDVVMQEN-ETPATIGKAANRQRELDFFAKVTE 65

Query: 809 HEAKLTKILVDGNNTAY-EMYMDFTYG-GHKVAKTQWALQEWKDGKVIKEEFY 961
             A   K +  G +    E ++D+T+    +V   Q ++Q WKDGKV+ E FY
Sbjct: 66  FRAADLKAVAYGEDVIISEWFVDYTHAEWGRVIHDQVSVQRWKDGKVVHERFY 118

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
 Frame = +2

Query: 197 DIRANLEAVIKGIQDNKILEVFEKYYHDEIVMFEKGDSTNRVGKAANRAAEEAFVSNATI 376
           +++AN E +   I   K +E FEKYY +++VM ++ ++   +GKAANR  E  F +  T
Sbjct: 7   NLQANFEDIQNLIAQGKAMEAFEKYYGEDVVM-QENETPATIGKAANRQRELDFFAKVTE 65

Query: 377 HEAKVLKTIVDGENSAY-EMFMDFTYG-GNRVQKTQWAFQQWSNGLIIKEEF 526
             A  LK +  GE+    E F+D+T+    RV   Q + Q+W +G ++ E F
Sbjct: 66  FRAADLKAVAYGEDVIISEWFVDYTHAEWGRVIHDQVSVQRWKDGKVVHERF 117

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,182,143,771
Number of extensions: 17794173
Number of successful extensions: 46530
Number of sequences better than 10.0: 9
Number of HSP's gapped: 46509
Number of HSP's successfully gapped: 15
Length of query: 353
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 224
Effective length of database: 639,555,889
Effective search space: 143260519136
Effective search space used: 143260519136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.48  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03890-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0