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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB375
Library AH
(Link to library)
Clone ID AHB375
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID AHB375P
(Link to Original site)
Representative DNA sequence 
>AHB375 (AHB375Q) /CSM/AH/AHB3-D/AHB375Q.Seq.d/
AGCAGAGATGGAAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAACAACAGCAACA
ACAACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAA
ACCATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATT
AGAGACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAACCATACTTTTC
TCATGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTTTTTACTTTGC
ATATCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTTATTCAATCCT
TTTCATCATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTAC
CAATCCATGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAA
GAAGCATCCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATC
ACGTACTTTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGXXXXXXXXX
XATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGT
CGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAA
GAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTG
GAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGG
TTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCAT
GTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAAC
TAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACA
ATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCC
AAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAA
TTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTT
ATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATA
TGCTTCTTCATACCATGCTCACAATATTGTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
AEMEEKMRQHKVYQEQQQQQQQQQQQQKQKDKELSSQKKKPSSMQLSKKKHVAKEDSETL
ETIIGEEKKEVVFEVKPYFSHAILQATMAVFLIWNIFYFAYRAGWTMNRTDYITFSYSIL
FIIVEFISFLGSALHLNNFTNPCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVS
RTFRTAISMDYPSENL---

---IMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEAT
DLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVF
RQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVL
RFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIV
Translated Amino Acid sequence (All Frames) 
Frame A:
srdgrenastqgiprattattttatttkakr*rvvitkeetiinaik*ketcrqrrf*ni
rdnhw*reeggci*s*tilfscnsssnhggifnleyfllciscrldne*nrlyhillfnp
fhhcrvylifgfsiafe*lyqsmyfcfggnigtnpcqekkeasnrydvrlylqrttihci
tyf*ncnlyglsk*kpl---

---IMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEAT
DLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVF
RQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVL
RFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIV

Frame B:
AEMEEKMRQHKVYQEQQQQQQQQQQQQKQKDKELSSQKKKPSSMQLSKKKHVAKEDSETL
ETIIGEEKKEVVFEVKPYFSHAILQATMAVFLIWNIFYFAYRAGWTMNRTDYITFSYSIL
FIIVEFISFLGSALHLNNFTNPCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVS
RTFRTAISMDYPSENL---

---l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*kll
ifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fvkfs
vklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**vlyl
dlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilf

Frame C:
qrwkrkcvntrytksnnsnnnnsnnnkskkikschhkrrnhhqcn*vkrnmspkkilkh*
rqslvkrrrrlylklnhtflmqffkqpwryf*fgifftlhivpvgq*iepiishsliqsf
ssl*slshfwvqhci*itlpihvllfww*hwnkslpreersiqpl*ctfvltknhhplyh
vllelqslwiiqvktf---

---yeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy*
sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sfp
sn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct*
i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqyc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL378 (SHL378Q) /CSM/SH/SHL3-D/SHL378Q.Seq.d/                       1370   0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/                       1370   0.0
SHK186 (SHK186Q) /CSM/SH/SHK1-D/SHK186Q.Seq.d/                       1370   0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/                       1370   0.0
SHG486 (SHG486Q) /CSM/SH/SHG4-D/SHG486Q.Seq.d/                       1370   0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/                       1370   0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/                       1370   0.0
SHD873 (SHD873Q) /CSM/SH/SHD8-D/SHD873Q.Seq.d/                       1370   0.0
SHD789 (SHD789Q) /CSM/SH/SHD7-D/SHD789Q.Seq.d/                       1370   0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/                       1370   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1370   0.0    2
AC094356|AC094356.6 Rattus norvegicus clone CH230-3C13, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   0.034  8
AC119602|AC119602.4 Rattus norvegicus clone CH230-363O5, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   0.15   7
AC125309|AC125309.4 Mus musculus BAC clone RP24-488N15 from chromosome 17, complete sequence.    34   0.20   8
AC133907|AC133907.6 Mus musculus chromosome 1 clone RP24-239K20 map 1, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    34   0.26   11
AC125529|AC125529.4 Mus musculus BAC clone RP23-366O3 from chromosome 17, complete sequence.    36   0.67   9
AC094533|AC094533.5 Rattus norvegicus clone CH230-4L19, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   1.0    8
AC055861|AC055861.2 Homo sapiens chromosome 15 clone RP11-95F11 map 15, WORKING DRAFT SEQUENCE, 29 unordered pieces.    38   1.2    9
AC019066|AC019066.6 Homo sapiens BAC clone RP11-164L4 from 7, complete sequence.    46   1.3    1
AC108257|AC108257.5 Rattus norvegicus clone CH230-190H18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   1.3    8
dna update 2004. 2.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   469   e-131
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    49   3e-04
CP000494_3389(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    45   0.005
CP001186_1574(CP001186|pid:none) Bacillus cereus G9842, complete...    42   0.045
CP001029_1254(CP001029|pid:none) Methylobacterium populi BJ001, ...    42   0.059
CP000320_131(CP000320|pid:none) Nitrobacter hamburgensis X14 pla...    41   0.10
AE001437_1541(AE001437|pid:none) Clostridium acetobutylicum ATCC...    40   0.13
CP000813_3350(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    40   0.17
CP000828_4747(CP000828|pid:none) Acaryochloris marina MBIC11017,...    40   0.17
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.17
protein update 2009. 4.27
PSORT 

 psg: 0.48  gvh: 0.04  alm: 0.23  top: 0.57  tms: 0.33  mit: 0.14  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 52.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for AHB375 is pla
5' end seq. ID AHB375F
5' end seq. 
>AHB375F.Seq
AGCAGAGATGGAAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAACAACAGCAACA
ACAACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAA
ACCATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATT
AGAGACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAACCATACTTTTC
TCATGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTTTTTACTTTGC
ATATCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTTATTCAATCCT
TTTCATCATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTAC
CAATCCATGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAA
GAAGCATCCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATC
ACGTACTTTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGNNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID AHB375Z
3' end seq. 
>AHB375Z.Seq
NNNNNNNNNNATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTT
CATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCT
TAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTAC
TGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATG
GAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAA
GTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTT
CCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAA
GGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACT
TTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACT
TAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTT
CTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACA
ATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTT
Length of 3' end seq. 701
Connected seq. ID AHB375P
Connected seq. 
>AHB375P.Seq
AGCAGAGATGGAAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAACAACAGCAACA
ACAACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAA
ACCATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATT
AGAGACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAACCATACTTTTC
TCATGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTTTTTACTTTGC
ATATCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTTATTCAATCCT
TTTCATCATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTAC
CAATCCATGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAA
GAAGCATCCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATC
ACGTACTTTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTG---------
-ATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGT
CGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAA
GAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTG
GAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGG
TTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCAT
GTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAAC
TAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACA
ATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCC
AAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAA
TTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTT
ATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATA
TGCTTCTTCATACCATGCTCACAATATTGTTT
Length of connected seq. 1282
Full length Seq ID -
Full length Seq. -
Length of full length seq. -