>AHB357 (AHB357Q) /CSM/AH/AHB3-C/AHB357Q.Seq.d/
TATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCAC
ATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTT
AATTTTAATAAAAAAAAAAXXXXXXXXXXTGGCTCTCATTTCCATTCCAGTTATGTTGGT
CATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGG
TCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATT
TGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGC
TGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTT
ATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTT
GGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGA

ylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLM

Frame A:
ylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---wlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvksl
fiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlv
lg*vplllyfylw

Frame B:
i*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---gshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slc
ssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwc
lvrclccctftyg

Frame C:
fkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLM

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/                        775   0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        775   0.0
VHN341 (VHN341Q) /CSM/VH/VHN3-B/VHN341Q.Seq.d/                        775   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        775   0.0
VHG103 (VHG103Q) /CSM/VH/VHG1-A/VHG103Q.Seq.d/                        775   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        775   0.0
SHK862 (SHK862Q) /CSM/SH/SHK8-C/SHK862Q.Seq.d/                        775   0.0
SHK785 (SHK785Q) /CSM/SH/SHK7-D/SHK785Q.Seq.d/                        775   0.0
SHK527 (SHK527Q) /CSM/SH/SHK5-B/SHK527Q.Seq.d/                        775   0.0
SHJ856 (SHJ856Q) /CSM/SH/SHJ8-C/SHJ856Q.Seq.d/                        775   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   775   0.0    2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   7e-12  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   4e-11  1
BQ408812|BQ408812.1 GA__Ed0012A07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0012A07r, mRNA sequence.    72   9e-09  1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   9e-09  1
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   9e-09  1
AL031744|AL031744.8 Plasmodium falciparum DNA from MAL1P1.         38   7e-08  10
AJ438978|AJ438978.1 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase  subunit 100 kDa subunit (vpha-a gene).    46   6e-07  2
BM301463|BM301463.1 MCR046C02_25968 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR046C02 5, mRNA sequence.    46   6e-07  2
CA835808|CA835808.1 MCS004C09_161124 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, Crassulacean acid metabolism, phase I (2 AM). Mesembryanthemum crystallinum cDNA clone MCS004C09 5, mRNA sequence.    46   6e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   262   4e-69
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   262   4e-69
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   131   1e-29
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   129   4e-29
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   129   4e-29
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   129   4e-29
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   128   8e-29
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   126   3e-28
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   125   6e-28
AY123133_1(AY123133|pid:none) Griffithsia japonica vacuolar prot...   121   1e-26

 psg: 0.85  gvh: 0.36  alm: 0.27  top: 0.53  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for AHB357 is cyt

>AHB357F.Seq
TATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCAC
ATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTT
AATTTTAATAAAAAAAAAANNNNNNNNNN

>AHB357Z.Seq
NNNNNNNNNNTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATG
AAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACAT
GATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTT
GTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCT
TATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAA
CGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGT
GCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGA

>AHB357P.Seq
TATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCAC
ATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTT
AATTTTAATAAAAAAAAAA----------TGGCTCTCATTTCCATTCCAGTTATGTTGGT
CATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGG
TCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATT
TGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGC
TGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTT
ATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTT
GGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGA