>AHB355 (AHB355Q) /CSM/AH/AHB3-C/AHB355Q.Seq.d/
XXXXXXXXXXATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTT
AATCATTCTTTNCTTTTTAAAAAACT

---KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAA
KLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVI
KEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQ
IKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxlfkk

Frame A:
---*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc
*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*sy
qrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*p
n*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sffxf*kt


Frame B:
---KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAA
KLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVI
KEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQ
IKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxlfkk


Frame C:
---rl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmll
nykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlkls
knfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltk
lkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilxflkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        545   e-154
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        545   e-154
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        545   e-154
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        545   e-154
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        545   e-154
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        545   e-154
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        545   e-154
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        545   e-154
SHL829 (SHL829Q) /CSM/SH/SHL8-B/SHL829Q.Seq.d/                        545   e-154
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        545   e-154

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   545   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-30  15
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   127   5e-27  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-11  19
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   2e-10  16
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   1e-07  14
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-07  11
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    34   3e-07  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   6e-07  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-06  18

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   221   2e-56
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.5
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.6
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   5.8
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   7.6
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   7.6
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   7.6
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   9.9
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   9.9

 psg: 0.44  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for AHB355 is nuc

>AHB355Z.Seq
NNNNNNNNNNATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTT
AATCATTCTTTNCTTTTTAAAAAACT