AFC108 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFC108
Library	AF (Link to library)
Clone ID	AFC108 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16540-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFC1-A/AFC108Q.Seq.d/
Representative seq. ID	AFC108P (Link to Original site)
Representative DNA sequence	>AFC108 (AFC108Q) /CSM/AF/AFC1-A/AFC108Q.Seq.d/ ATCAACTAAATTAAATAAATAATAAAATAAAAAAATAAAAAAAATGAGGATAAATAATTT ATTAGTATGTTTGGTTTTAGTTTTCTCAACATTATCAATTAGTAATGCAAATCCGGAACA TGATAAATGGTGGAAACCTCCTCCTAGAAATTGTGATAGTTTGTCAGAGGACCAATGTAA AGCACCAAATTCTGGTTGTAAGTATTTACCTTTTGTTTCATGTTGTGGTACAAAGAAATT CTTTTGTGTAGAAGATAATGGAAATGGTTGTGGAAATGCTCCATTAAGTTGTATGAAAGA TTCAAAAACCGATGCAATTTATGAGATTTGGAGTTCATGTAGACCAAATTCACCATTTTT ATATGATTATCAAGTTAGAAATGAAACTTGTGATCAAAAGCTATGTGAAGCAAGTGGAGG AGTTTGTGAATGGGTTGACCCAGTACCATGTATGGGTACATCATGTTGTCCACGTTATCC AGTTTGTAAGGGTGGTGGTGGCGGTGGTGGACCAGTCTCACCATGTAAGAATGTAATTTG TCCXXXXXXXXXXAAGGATTCAATTGTGTCGAATTTGGTGGAACCGCCAATTGTGTAGAA TGTGAAGAAAAGGAATGCGAGCATCACCATTGTCCACCAGGATATGATTGCGTGGTCGAC TCTCACCATCGTCCACATTGCCAAAGACCAAATCCAGGCTCATTATGTCGTAATGTAACT TGTCCATATGGCTATGTTTGCAAGGCAATTAATAATCTTCCAACATGTATTCGTAATCCA TTACCACCAAACTACCCATGTAGAGATTTACATTGCCCATCTGGATACTCTTGCGAAATC ATCAATGATCTCCCATCATGCGTAAGAGAAACCCATCCAGGTCATTGTAAAACTTGTCAT GATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCCTAATAAATGTCCAAGAGGTTCT CGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACCATCAAATTCTAATGATGATTAT GATAATGATCCTAATGGATATGATGATAATGAAAATGAGGGTGATGGATTATCAATTCCA TGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTGTTTATTAGAACAATCACGTTGT GCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTGTTGCTGATACAACT GGAATTCCAGTTTGTTTACCAAANGAATAACTCCATATTAAATTTAAATAAAAAAAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	stklnk*NKKIKKMRINNLLVCLVLVFSTLSISNANPEHDKWWKPPPRNCDSLSEDQCK APNSGCKYLPFVSCCGTKKFFCVEDNGNGCGNAPLSCMKDSKTDAIYEIWSSCRPNSPFL YDYQVRNETCDQKLCEASGGVCEWVDPVPCMGTSCCPRYPVCKGGGGGGGPVSPCKNVIC --- ---GFNCVEFGGTANCVECEEKECEHHHCPPGYDCVVDSHHRPHCQRPNPGSLCRNVTCP YGYVCKAINNLPTCIRNPLPPNYPCRDLHCPSGYSCEIINDLPSCVRETHPGHCKTCHDV NCGSLDCAMVPNKCPRGSRDCCIQIPSCRLPSNSNDDYDNDPNGYDDNENEGDGLSIPCG PIITCKLNEICLLEQSRCAPLCEFVKCSPGTKCVADTTGIPVCLPXElhikfk*kk
Translated Amino Acid sequence (All Frames)	Frame A: inikiikknkknedkfismfgfsflniincksgtmvetssklfvrgpm stkfwlvftfcfmlwykeillcrrwkwlwkcsiklyerfknrcnldlefmtkftif ilssknlskamskwrslmgpstmygyimlstlsslgwwwrwwtsltmecnl s--- ---kdsivsnlveppivnvkkrnasitivhqdmiawstltivhiakdqiqahyvvmlv hmamfarqliifqhvfvihyhqtthveiyiahldtlakssmishhaekpiqvivklvmm livvhwiaqwflinvqevlvtavfkfhrvvyhqilmmimimilmdmmimkmrvmdyqfhv aqlslvnmkfvynnhvvphyvnlnvhqelnvlliqlefqfvyqxnnsilnlnkk Frame B: stklnkNKKIKKMRINNLLVCLVLVFSTLSISNANPEHDKWWKPPPRNCDSLSEDQCK APNSGCKYLPFVSCCGTKKFFCVEDNGNGCGNAPLSCMKDSKTDAIYEIWSSCRPNSPFL YDYQVRNETCDQKLCEASGGVCEWVDPVPCMGTSCCPRYPVCKGGGGGGGPVSPCKNVIC --- ---riqlcriwwnrqlcrmrkgmrasplstrilrgrlspsstlpktksrlimscnls iwlclqgn*ssnmyssittklpmrftlpiwillrnhqspimrkrnpsrslnlsc lwfiglrngsmskrfsllysnsivsftikf*lswi***kgwiinsmw pnyhliknlfirtitlcpimickmftrnmccynwnsslftkxitpyiikk Frame C: qlninnkikkkkgiiyyvwffsqhyqlvmqirnminggnllleivivcqrtnvk hqilvvsiyllfhvvvqrnsfvkimemvvemlhvvkiqkpmqfmrfgvhvdqihhfy miiklemklviksyvkqveefvngltqyhvwvhhvvhviqfvrvvvavvdqshhvrmfv --- ---GFNCVEFGGTANCVECEEKECEHHHCPPGYDCVVDSHHRPHCQRPNPGSLCRNVTCP YGYVCKAINNLPTCIRNPLPPNYPCRDLHCPSGYSCEIINDLPSCVRETHPGHCKTCHDV NCGSLDCAMVPNKCPRGSRDCCIQIPSCRLPSNSNDDYDNDPNGYDDNENEGDGLSIPCG PIITCKLNEICLLEQSRCAPLCEFVKCSPGTKCVADTTGIPVCLPXElhikfkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/ 989 0.0 SFL363 (SFL363Q) /CSM/SF/SFL3-C/SFL363Q.Seq.d/ 989 0.0 SFK851 (SFK851Q) /CSM/SF/SFK8-C/SFK851Q.Seq.d/ 989 0.0 SFE669 (SFE669Q) /CSM/SF/SFE6-C/SFE669Q.Seq.d/ 989 0.0 CHC584 (CHC584Q) /CSM/CH/CHC5-D/CHC584Q.Seq.d/ 989 0.0 CFG712 (CFG712Q) /CSM/CF/CFG7-A/CFG712Q.Seq.d/ 989 0.0 CFF677 (CFF677Q) /CSM/CF/CFF6-D/CFF677Q.Seq.d/ 989 0.0 CFF190 (CFF190Q) /CSM/CF/CFF1-D/CFF190Q.Seq.d/ 989 0.0 CFE212 (CFE212Q) /CSM/CF/CFE2-A/CFE212Q.Seq.d/ 989 0.0 CFB770 (CFB770Q) /CSM/CF/CFB7-C/CFB770Q.Seq.d/ 989 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CC262402\|CC262402.1 CH261-72I18_Sp6.1 CH261 Gallus gallus genomic clone CH261-72I18, DNA sequence. 48 0.27 1 AC099425\|AC099425.7 Rattus norvegicus clone CH230-74D15, WORKING DRAFT SEQUENCE, 4 unordered pieces. 42 0.29 3 AL160371\|AL160371.4 Leishmania major Friedlin assembled chromosome 15 shotgun reads, with very preliminary annotation. 46 1.0 1 AL133316\|AL133316.5 Human chromosome 14 DNA sequence Partial sequence from BAC C-2577N12 of library CalTech-D from chromosome 14 of Homo sapiens (Human). 46 1.0 1 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 40 1.2 8 CD843519\|CD843519.1 RFO2.132I02F011016 RFO2 Brassica napus cDNA clone RFO2132I02, mRNA sequence. 36 1.9 2 AE003659\|AE003659.2 Drosophila melanogaster chromosome 2L, section 68 of 83 of the complete sequence. 42 1.9 2 AL227224\|AL227224.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone 211P17 of library G from Tetraodon nigroviridis. 38 2.4 2 AC106657\|AC106657.4 Rattus norvegicus clone CH230-71P24, * SEQUENCING IN PROGRESS *, 1 ordered piece. 40 2.4 4 AC012223\|AC012223.3 Homo sapiens chromosome 3 clone RP11-126J3 map 3, LOW-PASS SEQUENCE SAMPLING. 44 2.9 2
dna update	2003. 7.24
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 419 e-115 (Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 124 4e-47 D13973_1(D13973\|pid:none) Dictyostelium discoideum gene for Dp87... 121 4e-46 (P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 99 4e-19 (P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 92 5e-17 S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 90 2e-16 AF245486_1(AF245486\|pid:none) Polysphondylium pallidum spore coa... 64 8e-09 T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 59 3e-07 (Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 54 8e-06 AC117267_7(AC117267\|pid:none) Dictyostelium discoideum chromosom... 54 1e-05
protein update	2009. 3.27
PSORT	psg: 0.98 gvh: 0.81 alm: 0.40 top: 0.17 tms: 0.00 mit: 0.37 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: extracellular, including cell wall 12.0 %: vacuolar 12.0 %: endoplasmic reticulum 8.0 %: cytoplasmic 4.0 %: mitochondrial >> prediction for AFC108 is exc
5' end seq. ID	AFC108F
5' end seq.	>AFC108F.Seq ATCAACTAAATTAAATAAATAATAAAATAAAAAAATAAAAAAAATGAGGATAAATAATTT ATTAGTATGTTTGGTTTTAGTTTTCTCAACATTATCAATTAGTAATGCAAATCCGGAACA TGATAAATGGTGGAAACCTCCTCCTAGAAATTGTGATAGTTTGTCAGAGGACCAATGTAA AGCACCAAATTCTGGTTGTAAGTATTTACCTTTTGTTTCATGTTGTGGTACAAAGAAATT CTTTTGTGTAGAAGATAATGGAAATGGTTGTGGAAATGCTCCATTAAGTTGTATGAAAGA TTCAAAAACCGATGCAATTTATGAGATTTGGAGTTCATGTAGACCAAATTCACCATTTTT ATATGATTATCAAGTTAGAAATGAAACTTGTGATCAAAAGCTATGTGAAGCAAGTGGAGG AGTTTGTGAATGGGTTGACCCAGTACCATGTATGGGTACATCATGTTGTCCACGTTATCC AGTTTGTAAGGGTGGTGGTGGCGGTGGTGGACCAGTCTCACCATGTAAGAATGTAATTTG TCC----------
Length of 5' end seq.	543
3' end seq. ID	AFC108Z
3' end seq.	>AFC108Z.Seq ----------AAGGATTCAATTGTGTCGAATTTGGTGGAACCGCCAATTGTGTAGAATGT GAAGAAAAGGAATGCGAGCATCACCATTGTCCACCAGGATATGATTGCGTGGTCGACTCT CACCATCGTCCACATTGCCAAAGACCAAATCCAGGCTCATTATGTCGTAATGTAACTTGT CCATATGGCTATGTTTGCAAGGCAATTAATAATCTTCCAACATGTATTCGTAATCCATTA CCACCAAACTACCCATGTAGAGATTTACATTGCCCATCTGGATACTCTTGCGAAATCATC AATGATCTCCCATCATGCGTAAGAGAAACCCATCCAGGTCATTGTAAAACTTGTCATGAT GTTAATTGTGGTTCATTGGATTGCGCAATGGTTCCTAATAAATGTCCAAGAGGTTCTCGT GACTGCTGTATTCAAATTCCATCGTGTCGTTTACCATCAAATTCTAATGATGATTATGAT AATGATCCTAATGGATATGATGATAATGAAAATGAGGGTGATGGATTATCAATTCCATGT GGCCCAATTATCACTTGTAAATTAAATGAAATTTGTTTATTAGAACAATCACGTTGTGCC CCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTGTTGCTGATACAACTGGA ATTCCAGTTTGTTTACCAAANGAATAACTCCATATTAAATTTAAATAAAAAAAA
Length of 3' end seq.	704
Connected seq. ID	AFC108P
Connected seq.	>AFC108P.Seq ATCAACTAAATTAAATAAATAATAAAATAAAAAAATAAAAAAAATGAGGATAAATAATTT ATTAGTATGTTTGGTTTTAGTTTTCTCAACATTATCAATTAGTAATGCAAATCCGGAACA TGATAAATGGTGGAAACCTCCTCCTAGAAATTGTGATAGTTTGTCAGAGGACCAATGTAA AGCACCAAATTCTGGTTGTAAGTATTTACCTTTTGTTTCATGTTGTGGTACAAAGAAATT CTTTTGTGTAGAAGATAATGGAAATGGTTGTGGAAATGCTCCATTAAGTTGTATGAAAGA TTCAAAAACCGATGCAATTTATGAGATTTGGAGTTCATGTAGACCAAATTCACCATTTTT ATATGATTATCAAGTTAGAAATGAAACTTGTGATCAAAAGCTATGTGAAGCAAGTGGAGG AGTTTGTGAATGGGTTGACCCAGTACCATGTATGGGTACATCATGTTGTCCACGTTATCC AGTTTGTAAGGGTGGTGGTGGCGGTGGTGGACCAGTCTCACCATGTAAGAATGTAATTTG TCC----------AAGGATTCAATTGTGTCGAATTTGGTGGAACCGCCAATTGTGTAGAA TGTGAAGAAAAGGAATGCGAGCATCACCATTGTCCACCAGGATATGATTGCGTGGTCGAC TCTCACCATCGTCCACATTGCCAAAGACCAAATCCAGGCTCATTATGTCGTAATGTAACT TGTCCATATGGCTATGTTTGCAAGGCAATTAATAATCTTCCAACATGTATTCGTAATCCA TTACCACCAAACTACCCATGTAGAGATTTACATTGCCCATCTGGATACTCTTGCGAAATC ATCAATGATCTCCCATCATGCGTAAGAGAAACCCATCCAGGTCATTGTAAAACTTGTCAT GATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCCTAATAAATGTCCAAGAGGTTCT CGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACCATCAAATTCTAATGATGATTAT GATAATGATCCTAATGGATATGATGATAATGAAAATGAGGGTGATGGATTATCAATTCCA TGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTGTTTATTAGAACAATCACGTTGT GCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTGTTGCTGATACAACT GGAATTCCAGTTTGTTTACCAAANGAATAACTCCATATTAAATTTAAATAAAAAAAA
Length of connected seq.	1247
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas