NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB313
Library AH
(Link to library)
Clone ID AHB313
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12643-1|Contig-U15705-1
Original site URL
Representative seq. ID AHB313P
(Link to Original site)
Representative DNA sequence 
>AHB313 (AHB313Q) /CSM/AH/AHB3-A/AHB313Q.Seq.d/
AATAATAATGGTGAAAATAACCAAAATAATTCAAATAAAAAGCAACCACATATTGGAGGT
GGTGAAAATTTAGATGAACAAGTTGATATTAAAATTAACAAATGTAATGAAGTAAATGAT
TCATATCAACCAAGTAAACCATCAGTTGCAATTTATTCCTCTAATAATAATAATAATTTA
AAACCAGGGAATATTGCTTATGGAAATAATAGTCAATCATCTGATCCAAGTGAACCTGTT
GTAATTGGAGATCATAGATCAAATTCACCAAGAACTAAATCTCAATTAGATTTAAATCAA
TATCAACCAACACCAAATGTTGGAAAATCAACTCAACCAACTACTACAACCACTACTACA
ACCACCACAAGTACAACAAAAACTTTACCAAATAAAGATAATGACAACCATCTACATGGT
CATGACCATCAAAATGATGATAATAATAATTCATCGTCAGATTCTTCAGATAGTGAAGAC
GATTCTGTACATGATTCATCATCAAGTAGTGAAGATGAATCTGACCATGAAAGAAAACGT
AAAGCTAGAAAAGAAAAGAAAAAACAACAAAAACAATTAAAACATAGACAAGGTCACCAT
ATTCATAATCATGAAGTTGGTGGTGGTGGCGCTGCTGTTGTTATTGATAATXXXXXXXXX
XAAAGACCAAAAGAAAAAGTATACACACAAACAATTACAACCAATTGTTTCATCAGGTAA
AAATTGTAAAAGATGTAAACTTGAAATATTTGGTAATACATTAATAAATCATTTACAAGA
GACCTATCATCCAGAATGTTTCAAATGTTCAAATTGTTTCTCATCAATAGTTGATCCATA
TTTCACTGAACCATCAACAAATAAAATCTTTTGTGCAAAATGTCAAATCGTTTTAAATGA
TTTAGCAAAACCAAAAAGAGATTCATTAGGTTTCTGTTGTTCATGTTATAAATTTTTAAC
TGAAGAAGATGATATTATTGTAATTGATAAAGAGAAATATCATAATAAATGTTTTAAATG
TTCATCTTGTAAGGAAGTTATTAGAGGAAATAATTTTAGTAGAGAACAAATGACATCAAC
TTCAAGTAACTATTGTTGTAATACTTGTTTACACAGTGGTAGAGTTGATAAATGTGCTTA
TTGTCATGGTGTAATTTTGGGTGTATCAATGTTGGCAATGGGTCAAAACTATCATCCAAA
ATGTTTCAAATGTTCAACTTGTCATGTTGTAATTAGACACAACACACCTTTTACAATTAA
TAAAAATCAAACTCCAACCTGTCAAAATTGTATTAACACTTCAAGTGTTGGTGTTGCTTC
AAGATAAATTACTATATATAAAATAAAATAAAATAAAATAATAAATAAAATAAATTAATA
AATAAAATATAAAATAAAAAAANATTAAATAAATAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NNNGENNQNNSNKKQPHIGGGENLDEQVDIKINKCNEVNDSYQPSKPSVAIYSSNNNNNL
KPGNIAYGNNSQSSDPSEPVVIGDHRSNSPRTKSQLDLNQYQPTPNVGKSTQPTTTTTTT
TTTSTTKTLPNKDNDNHLHGHDHQNDDNNNSSSDSSDSEDDSVHDSSSSSEDESDHERKR
KARKEKKKQQKQLKHRQGHHIHNHEVGGGGAAVVIDN---

---KDQKKKYTHKQLQPIVSSGKNCKRCKLEIFGNTLINHLQETYHPECFKCSNCFSSIV
DPYFTEPSTNKIFCAKCQIVLNDLAKPKRDSLGFCCSCYKFLTEEDDIIVIDKEKYHNKC
FKCSSCKEVIRGNNFSREQMTSTSSNYCCNTCLHSGRVDKCAYCHGVILGVSMLAMGQNY
HPKCFKCSTCHVVIRHNTPFTINKNQTPTCQNCINTSSVGVASR*itiykik*nkiinki
n**ikykikkx*ink*
Translated Amino Acid sequence (All Frames) 
Frame A:
NNNGENNQNNSNKKQPHIGGGENLDEQVDIKINKCNEVNDSYQPSKPSVAIYSSNNNNNL
KPGNIAYGNNSQSSDPSEPVVIGDHRSNSPRTKSQLDLNQYQPTPNVGKSTQPTTTTTTT
TTTSTTKTLPNKDNDNHLHGHDHQNDDNNNSSSDSSDSEDDSVHDSSSSSEDESDHERKR
KARKEKKKQQKQLKHRQGHHIHNHEVGGGGAAVVIDN---

---KDQKKKYTHKQLQPIVSSGKNCKRCKLEIFGNTLINHLQETYHPECFKCSNCFSSIV
DPYFTEPSTNKIFCAKCQIVLNDLAKPKRDSLGFCCSCYKFLTEEDDIIVIDKEKYHNKC
FKCSSCKEVIRGNNFSREQMTSTSSNYCCNTCLHSGRVDKCAYCHGVILGVSMLAMGQNY
HPKCFKCSTCHVVIRHNTPFTINKNQTPTCQNCINTSSVGVASR*itiykik*nkiinki
n**ikykikkx*ink*

Frame B:
iimvkitkiiqiksnhilevvki*mnklilkltnvmk*mihinqvnhqlqfipliiiii*
nqgillmeiivnhliqvnll*leiidqihqelnln*i*ininqhqmlenqlnqllqpllq
ppqvqqklyqikimttiymvmtikmmiiiihrqilqivktilymihhqvvkmnltmkenv
klekkrknnknn*nidkvtifiimklvvvallllli---

---ktkrksihtnnynqlfhqvkivkdvnlkylvih**iiykrpiiqnvsnvqivshq*l
ihislnhqqiksfvqnvksf*mi*qnqkeih*vsvvhvinf*lkkmill*likrniiinv
lnvhlvrklleeiilvenk*hqlqvtivvilvytvvelinvlivmv*fwvyqcwqwvkti
iqnvsnvqlvml*ldtthllqlikiklqpvkivltlqvlvllqdkllyik*nkik**ik*
ink*nik*kxik*ink

Frame C:
**w*k*pk*fk*kattywrw*kfr*ts*y*n*qm**sk*fistk*tiscnlfl*****fk
treyclwk**sii*sk*tccnwrs*ikftkn*isirfksistntkcwkinstnyynhyyn
hhkynknftk*r**qpstws*psk*****fivrffr**rrfct*fiik**r*i*p*kkt*
s*krkekttktikt*trspys*s*swwwwrcccy**---

---rpkekvytqtittncfir*kl*km*t*niw*yinksftrdlssrmfqmfklflins*
sifh*tink*nllckmsnrfk*fsktkkrfirfllfml*ifn*rr*yycn**reis**mf
*mfil*gsy*rk*f**rtndinfk*lll*ylftqw*s**mcllswcnfgcinvgngskls
skmfqmfnlsccn*tqhtfyn**ksnsnlskly*hfkcwccfkinyyi*nkik*nnk*nk
linki*nkkxlnk*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB313 (AHB313Q) /CSM/AH/AHB3-A/AHB313Q.Seq.d/                       1429   0.0
SHK309 (SHK309Q) /CSM/SH/SHK3-A/SHK309Q.Seq.d/                       1211   0.0
SSM849 (SSM849Q) /CSM/SS/SSM8-C/SSM849Q.Seq.d/                        991   0.0
SSF366 (SSF366Q) /CSM/SS/SSF3-C/SSF366Q.Seq.d/                        846   0.0
CFI217 (CFI217Q) /CSM/CF/CFI2-A/CFI217Q.Seq.d/                        375   e-102
AHQ583 (AHQ583Q) /CSM/AH/AHQ5-D/AHQ583Q.Seq.d/                         48   4e-04
AFD430 (AFD430Q) /CSM/AF/AFD4-B/AFD430Q.Seq.d/                         48   4e-04
VSK139 (VSK139Q) /CSM/VS/VSK1-B/VSK139Q.Seq.d/                         44   0.006
VHP854 (VHP854Q) /CSM/VH/VHP8-C/VHP854Q.Seq.d/                         44   0.006
SSJ802 (SSJ802Q) /CSM/SS/SSJ8-A/SSJ802Q.Seq.d/                         44   0.006
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83086|U83086.1 Dictyostelium discoideum LimA (limA) mRNA, partial cds.  1253   0.0    3
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    38   5e-11  16
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    44   6e-11  6
AY160091|AY160091.1 Dictyostelium discoideum nucleotide exchange factor RasGEF B (gefB) gene, complete cds.    50   1e-10  7
AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence.    38   3e-10  9
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   3e-10  14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   4e-10  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   6e-10  6
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  38   2e-09  12
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    38   3e-09  11
dna update 2004. 2.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QR1) RecName: Full=LIM domain-containing protein A;               452   e-128
U83086_1(U83086|pid:none) Dictyostelium discoideum LimA (limA) m...   452   e-128
(Q86I44) RecName: Full=LIM domain-containing protein F;  &AC1163...   219   2e-55
AB122059_1(AB122059|pid:none) Anguilla japonica eFHL5 mRNA for f...    87   1e-15
BC142519_1(BC142519|pid:none) Bos taurus actin binding LIM prote...    86   3e-15
BT056486_1(BT056486|pid:none) Salmo salar clone ssal-rgb2-624-31...    86   3e-15
BT049822_1(BT049822|pid:none) Salmo salar clone ssal-rgb2-509-14...    86   3e-15
BC129372_1(BC129372|pid:none) Danio rerio zgc:158673, mRNA (cDNA...    86   4e-15
AK173040_1(AK173040|pid:none) Mus musculus mRNA for mKIAA0843 pr...    86   4e-15
AM392844_1(AM392844|pid:none) Synthetic construct Mus musculus c...    86   4e-15
protein update 2009. 4.27
PSORT 

 psg: 0.75  gvh: 0.16  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.38  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for AHB313 is nuc
5' end seq. ID AHB313F
5' end seq. 
>AHB313F.Seq
AATAATAATGGTGAAAATAACCAAAATAATTCAAATAAAAAGCAACCACATATTGGAGGT
GGTGAAAATTTAGATGAACAAGTTGATATTAAAATTAACAAATGTAATGAAGTAAATGAT
TCATATCAACCAAGTAAACCATCAGTTGCAATTTATTCCTCTAATAATAATAATAATTTA
AAACCAGGGAATATTGCTTATGGAAATAATAGTCAATCATCTGATCCAAGTGAACCTGTT
GTAATTGGAGATCATAGATCAAATTCACCAAGAACTAAATCTCAATTAGATTTAAATCAA
TATCAACCAACACCAAATGTTGGAAAATCAACTCAACCAACTACTACAACCACTACTACA
ACCACCACAAGTACAACAAAAACTTTACCAAATAAAGATAATGACAACCATCTACATGGT
CATGACCATCAAAATGATGATAATAATAATTCATCGTCAGATTCTTCAGATAGTGAAGAC
GATTCTGTACATGATTCATCATCAAGTAGTGAAGATGAATCTGACCATGAAAGAAAACGT
AAAGCTAGAAAAGAAAAGAAAAAACAACAAAAACAATTAAAACATAGACAAGGTCACCAT
ATTCATAATCATGAAGTTGGTGGTGGTGGCGCTGCTGTTGTTATTGATAATNNNNNNNNN
N
Length of 5' end seq. 661
3' end seq. ID AHB313Z
3' end seq. 
>AHB313Z.Seq
NNNNNNNNNNAAAGACCAAAAGAAAAAGTATACACACAAACAATTACAACCAATTGTTTC
ATCAGGTAAAAATTGTAAAAGATGTAAACTTGAAATATTTGGTAATACATTAATAAATCA
TTTACAAGAGACCTATCATCCAGAATGTTTCAAATGTTCAAATTGTTTCTCATCAATAGT
TGATCCATATTTCACTGAACCATCAACAAATAAAATCTTTTGTGCAAAATGTCAAATCGT
TTTAAATGATTTAGCAAAACCAAAAAGAGATTCATTAGGTTTCTGTTGTTCATGTTATAA
ATTTTTAACTGAAGAAGATGATATTATTGTAATTGATAAAGAGAAATATCATAATAAATG
TTTTAAATGTTCATCTTGTAAGGAAGTTATTAGAGGAAATAATTTTAGTAGAGAACAAAT
GACATCAACTTCAAGTAACTATTGTTGTAATACTTGTTTACACAGTGGTAGAGTTGATAA
ATGTGCTTATTGTCATGGTGTAATTTTGGGTGTATCAATGTTGGCAATGGGTCAAAACTA
TCATCCAAAATGTTTCAAATGTTCAACTTGTCATGTTGTAATTAGACACAACACACCTTT
TACAATTAATAAAAATCAAACTCCAACCTGTCAAAATTGTATTAACACTTCAAGTGTTGG
TGTTGCTTCAAGATAAATTACTATATATAAAATAAAATAAAATAAAATAATAAATAAAAT
AAATTAATAAATAAAATATAAAATAAAAAAANATTAAATAAATAAATAAA
Length of 3' end seq. 770
Connected seq. ID AHB313P
Connected seq. 
>AHB313P.Seq
AATAATAATGGTGAAAATAACCAAAATAATTCAAATAAAAAGCAACCACATATTGGAGGT
GGTGAAAATTTAGATGAACAAGTTGATATTAAAATTAACAAATGTAATGAAGTAAATGAT
TCATATCAACCAAGTAAACCATCAGTTGCAATTTATTCCTCTAATAATAATAATAATTTA
AAACCAGGGAATATTGCTTATGGAAATAATAGTCAATCATCTGATCCAAGTGAACCTGTT
GTAATTGGAGATCATAGATCAAATTCACCAAGAACTAAATCTCAATTAGATTTAAATCAA
TATCAACCAACACCAAATGTTGGAAAATCAACTCAACCAACTACTACAACCACTACTACA
ACCACCACAAGTACAACAAAAACTTTACCAAATAAAGATAATGACAACCATCTACATGGT
CATGACCATCAAAATGATGATAATAATAATTCATCGTCAGATTCTTCAGATAGTGAAGAC
GATTCTGTACATGATTCATCATCAAGTAGTGAAGATGAATCTGACCATGAAAGAAAACGT
AAAGCTAGAAAAGAAAAGAAAAAACAACAAAAACAATTAAAACATAGACAAGGTCACCAT
ATTCATAATCATGAAGTTGGTGGTGGTGGCGCTGCTGTTGTTATTGATAAT---------
-AAAGACCAAAAGAAAAAGTATACACACAAACAATTACAACCAATTGTTTCATCAGGTAA
AAATTGTAAAAGATGTAAACTTGAAATATTTGGTAATACATTAATAAATCATTTACAAGA
GACCTATCATCCAGAATGTTTCAAATGTTCAAATTGTTTCTCATCAATAGTTGATCCATA
TTTCACTGAACCATCAACAAATAAAATCTTTTGTGCAAAATGTCAAATCGTTTTAAATGA
TTTAGCAAAACCAAAAAGAGATTCATTAGGTTTCTGTTGTTCATGTTATAAATTTTTAAC
TGAAGAAGATGATATTATTGTAATTGATAAAGAGAAATATCATAATAAATGTTTTAAATG
TTCATCTTGTAAGGAAGTTATTAGAGGAAATAATTTTAGTAGAGAACAAATGACATCAAC
TTCAAGTAACTATTGTTGTAATACTTGTTTACACAGTGGTAGAGTTGATAAATGTGCTTA
TTGTCATGGTGTAATTTTGGGTGTATCAATGTTGGCAATGGGTCAAAACTATCATCCAAA
ATGTTTCAAATGTTCAACTTGTCATGTTGTAATTAGACACAACACACCTTTTACAATTAA
TAAAAATCAAACTCCAACCTGTCAAAATTGTATTAACACTTCAAGTGTTGGTGTTGCTTC
AAGATAAATTACTATATATAAAATAAAATAAAATAAAATAATAAATAAAATAAATTAATA
AATAAAATATAAAATAAAAAAANATTAAATAAATAAATAAA
Length of connected seq. 1411
Full length Seq ID -
Full length Seq. -
Length of full length seq. -