AHB310 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHB310
Library	AH (Link to library)
Clone ID	AHB310 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11129-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB3-A/AHB310Q.Seq.d/
Representative seq. ID	AHB310P (Link to Original site)
Representative DNA sequence	>AHB310 (AHB310Q) /CSM/AH/AHB3-A/AHB310Q.Seq.d/ GTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCA AAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGT ATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTA AAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGT TGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAA TCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGT ATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTAT GTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGT CGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATAT CAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAA AGATGGXXXXXXXXXXCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAA AACCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGT TGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACT TGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACT CTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAAT TGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGA TTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTAT GTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGA AGAGGCACCACATCCATTCCATAGTACAAAAGCTCTAGGTATGGCTGCTCCTCACAAAGA TGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAA GACTGGTCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGT CAGAATCAAATACATCTTAAGAGTTTACAANGAAAATAAAATAAAATAAAATTTTTTAAA ATTATCCTTAAATTTTT
sequence update	2002.10.25
Translated Amino Acid sequence	VNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHL KCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDS IADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEY QCKGWISGFTKCDWKGDSIERW--- ---LEGNMIENQYITLKNQTHST*rcslnlgrlccqsrtinqylcsrysfter ektfhslgkreitlmawvnfridclagikncsticsknwlqiwrylfcly* iiqllfhiklsnctyvimsftwheietylygrgttsipykssrygcssqrws ssffwfsstirnfkdwslnfmysqihclntsqnqihlkslqxk*nkikffkiil kf
Translated Amino Acid sequence (All Frames)	Frame A: VNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHL KCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDS IADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEY QCKGWISGFTKCDWKGDSIERW--- ---hsrvtlkinilhsktkltpldkdsvvyktlvdyvansqdkqfrtnicvqdilsler eneserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgiyfadci sksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaaphkdgn hplsdsdglvvplgkisktglstscthnefivykieqvrikyilrvyxenkiknflkls lnf Frame B: liakekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgii* nvnvhkyhhlqiftgntfvgktnyqlkqlifhlksmiqnqhqrykernirhygklkiv lpitrdqqlktsfniikvmliryhqfiyfilsligckvvqvdvqlvrisiyfsmvsni nvkvgfqvsqnvigkviqlkd--- ---trghdksiyytqkpnslhlikivfikpwimlpivkinnlepisvfkiffhlre rmkvnvsllgqkiridysygmvvglisyrlsrrdellhhllqklvtdlvkvfillivl vnhsaivshqvivqlhlcyyvkfhlvtmnnmipiwkrhhihsivqklvwllltkmvi ilflilmvyhvkfqrlvsqlhvltmnslsiklnksesntseftxkiknkifnyp if Frame C: *qkkngnkkyisldickeinmfnlskryrsssywlnkiktlwngcimasfk mmststiiyrfnslgipslgrpiinnnlffikvskisirgtkreifkgimgsry crlegtsnkhhsirlcgitssftsyslldvkrssrmsnlefrytfqwyris mrldfrfhkmlerfnkm--- ---LEGNMIENQYITLKNQTHST*rcslnlgrlccqsrtinqylcsrysfter ektfhslgkreitlmawvnfridclagikncsticsknwlqiwrylfcly* iiqllfhiklsnctyvimsftwheietylygrgttsipykssrygcssqrws ssffwfsstirnfkdwslnfmysqihclntsqnqihlkslqxk*nkikffkiil kf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AHB310 (AHB310Q) /CSM/AH/AHB3-A/AHB310Q.Seq.d/ 2498 0.0 SHF852 (SHF852Q) /CSM/SH/SHF8-C/SHF852Q.Seq.d/ 1322 0.0 AHO201 (AHO201Q) /CSM/AH/AHO2-A/AHO201Q.Seq.d/ 1320 0.0 CHP243 (CHP243Q) /CSM/CH/CHP2-B/CHP243Q.Seq.d/ 1314 0.0 VHD227 (VHD227Q) /CSM/VH/VHD2-B/VHD227Q.Seq.d/ 1312 0.0 VHC836 (VHC836Q) /CSM/VH/VHC8-B/VHC836Q.Seq.d/ 1312 0.0 VHB869 (VHB869Q) /CSM/VH/VHB8-C/VHB869Q.Seq.d/ 1312 0.0 SHK889 (SHK889Q) /CSM/SH/SHK8-D/SHK889Q.Seq.d/ 1312 0.0 SHJ664 (SHJ664Q) /CSM/SH/SHJ6-C/SHJ664Q.Seq.d/ 1312 0.0 CHG489 (CHG489Q) /CSM/CH/CHG4-D/CHG489Q.Seq.d/ 1312 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AJ534948\|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1237 0.0 2 AJ520099\|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 62 2e-14 3 AE016967\|AE016967.1 Mycoplasma gallisepticum strain R section 1 of 4 of the complete genome. 36 0.035 13 AC139644\|AC139644.1 Rattus norvegicus clone CH230-401P15, * SEQUENCING IN PROGRESS , 30 unordered pieces. 40 0.059 5 AC142355\|AC142355.1 Pan troglodytes BAC clone RP43-22I16 from 7, complete sequence. 32 0.066 10 AC106674\|AC106674.4 Rattus norvegicus clone CH230-108D18, SEQUENCING IN PROGRESS , 4 unordered pieces. 38 0.071 11 BX927159\|BX927159.5 Zebrafish DNA sequence SEQUENCING IN PROGRESS * from clone. 38 0.079 9 AC107307\|AC107307.3 Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 50 0.083 1 AC025807\|AC025807.2 Homo sapiens clone RP11-657G2, WORKING DRAFT SEQUENCE, 15 unordered pieces. 50 0.083 1 AL139078\|AL139078.2 Campylobacter jejuni NCTC11168 complete genome; segment 5/6. 34 0.24 12
dna update	2004. 2.26
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value X65497_1(X65497\|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 189 2e-46 (P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 189 2e-46 PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 189 2e-46 (P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 189 2e-46 AK303340_1(AK303340\|pid:none) Homo sapiens cDNA FLJ53442 complet... 187 5e-46 (Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 187 7e-46 AK312339_1(AK312339\|pid:none) Homo sapiens cDNA, FLJ92658, highl... 187 9e-46 J03473_1(J03473\|pid:none) Human poly(ADP-ribose) synthetase mRNA... 187 9e-46 AB384394_1(AB384394\|pid:none) Synthetic construct DNA, clone: pF... 187 9e-46 M17081_1(M17081\|pid:none) Human placental poly(ADP-ribose) polym... 187 9e-46
protein update	2009. 4.27
PSORT	psg: 0.58 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: mitochondrial 32.0 %: nuclear 20.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: extracellular, including cell wall >> prediction for AHB310 is mit
5' end seq. ID	AHB310F
5' end seq.	>AHB310F.Seq GTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCA AAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGT ATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTA AAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGT TGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAA TCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGT ATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTAT GTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGT CGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATAT CAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAA AGATGGNNNNNNNNNN
Length of 5' end seq.	616
3' end seq. ID	AHB310Z
3' end seq.	>AHB310Z.Seq NNNNNNNNNNCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAAACCAA ACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAA TAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAG AGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATG GCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCC ACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTAT TAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATT ATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGC ACCACATCCATTCCATAGTACAAAAGCTCTAGGTATGGCTGCTCCTCACAAAGATGGTAA TCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGG TCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCAGAAT CAAATACATCTTAAGAGTTTACAANGAAAATAAAATAAAATAAAATTTTTTAAAATTATC CTTAAATTTTT
Length of 3' end seq.	731
Connected seq. ID	AHB310P
Connected seq.	>AHB310P.Seq GTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCA AAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGT ATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTA AAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGT TGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAA TCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGT ATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTAT GTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGT CGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATAT CAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAA AGATGG----------CACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAA AACCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGT TGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACT TGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACT CTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAAT TGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGA TTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTAT GTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGA AGAGGCACCACATCCATTCCATAGTACAAAAGCTCTAGGTATGGCTGCTCCTCACAAAGA TGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAA GACTGGTCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGT CAGAATCAAATACATCTTAAGAGTTTACAANGAAAATAAAATAAAATAAAATTTTTTAAA ATTATCCTTAAATTTTT
Length of connected seq.	1327
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas