NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB309
Library AH
(Link to library)
Clone ID AHB309
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID AHB309P
(Link to Original site)
Representative DNA sequence 
>AHB309 (AHB309Q) /CSM/AH/AHB3-A/AHB309Q.Seq.d/
GTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGA
TGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGA
TGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACA
GTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAAAG
ATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCA
ACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAGCA
AAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAA
GAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAA
GGAGGTTGTATTTGAAGTTAAACCATACTTTTCTCATGCAATTCTTCAAGCAACCATGGC
GGTATTTTTAATTTGGAATATTTTTTACTTTGCATATCGTGCCGGTTGGGCAATGAATXX
XXXXXXXXTTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATAT
GATTCTTAGAGCCAAGAGACNTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGA
AGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTC
ATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCG
TCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGA
AGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAA
ACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTC
AAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGC
TGCACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTT
CTCTTTCTTTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGA
AAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGGTACT
TGGTTTCTGGTATTACTCTTTGTGATGTCAAAGTTTGATTCCTAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
LKSSGVLKKKNTVMDFGEDDGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQ
FPKEMNSPSSEYGTTSGGQRFDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQ
KDKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKPYFSHAILQATMA
VFLIWNIFYFAYRAGWAMN---

---LVGMIPVMVLPRVIQYMILRAKRXYEAGKSGPSLWVEATDLWRAEQTFFGFAGTYIS
SWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNENDNAQESSGK
HKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAALRFNCFQNDMWLLVVVAGF
SFFTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLVLGFWYYSL*cqslipr
Translated Amino Acid sequence (All Frames) 
Frame A:
vke*wcfkekeycdglw*r*ww*w*rw*ynrrftn**ryg*ftiifklswrqr***tket
vpkgnefsiigiwhnkwrski*yig*s*y*fsrdgrenastqgiprattattttatttka
kr*rvvitkeetiinaik*ketcrqrrf*nirdnhw*reeggci*s*tilfscnsssnhg
gifnleyfllciscrlgne---

---fssv*fl*wcyqesfni*fleprdxmkpvrvvhhfg*kllifgelnklslvllvlif
hhgekvplqslnflklerlvvis*pcgigreis*rnq*fvkfsvklnwsmkmimlknqvv
nirlnnlsvlqtknliplkiqdfsfqilssllliswl**vlhldlivskmicgfwls*lv
slslpygiyglsfqwlfvkvknnghmllhtmltilfyswylvsgitlcdvkv*fl

Frame B:
LKSSGVLKKKNTVMDFGEDDGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQ
FPKEMNSPSSEYGTTSGGQRFDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQ
KDKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKPYFSHAILQATMA
VFLIWNIFYFAYRAGWAMN---

---srrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy*sles*tnflwfcwylyf
imerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sfpsn*igq*k**csrikw*
t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct*i*lfpk*yvafgcrswf
lflylmafmvfhsngsssk*ktmaicffipcsqycfilgtwflvllfvmskfds*

Frame C:
*rvvvf*rkril*wtlvkmmvvvvtmvi*pkvyqlvkvwmiyhhlqtlvaaavmmnkrns
sqrk*ilhhrnmaqqvavkdlihwlililv*qrwkrkcvntrytksnnsnnnnsnnnksk
kikschhkrrnhhqcn*vkrnmspkkilkh*rqslvkrrrrlylklnhtflmqffkqpwr
yf*fgifftlhivpvgq*---

---LVGMIPVMVLPRVIQYMILRAKRXYEAGKSGPSLWVEATDLWRAEQTFFGFAGTYIS
SWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNENDNAQESSGK
HKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAALRFNCFQNDMWLLVVVAGF
SFFTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLVLGFWYYSL*cqslipr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB309 (AHB309Q) /CSM/AH/AHB3-A/AHB309Q.Seq.d/                       1820   0.0
SHD704 (SHD704Q) /CSM/SH/SHD7-A/SHD704Q.Seq.d/                       1362   0.0
SHK464 (SHK464Q) /CSM/SH/SHK4-C/SHK464Q.Seq.d/                       1348   0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/                       1348   0.0
CHG541 (CHG541Q) /CSM/CH/CHG5-B/CHG541Q.Seq.d/                       1348   0.0
AHQ442 (AHQ442Q) /CSM/AH/AHQ4-B/AHQ442Q.Seq.d/                       1348   0.0
SHK186 (SHK186Q) /CSM/SH/SHK1-D/SHK186Q.Seq.d/                       1346   0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/                       1346   0.0
SHA836 (SHA836Q) /CSM/SH/SHA8-B/SHA836Q.Seq.d/                       1346   0.0
SHA730 (SHA730Q) /CSM/SH/SHA7-B/SHA730Q.Seq.d/                       1346   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1287   0.0    3
AC093323|AC093323.3 Homo sapiens BAC clone RP11-539L10 from 4, complete sequence.    54   0.005  1
AC006097|AC006097.1 Homo sapiens chromosome 10 clone CIT987SK-1031G15 map 10q25, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    54   0.005  1
AC004480|AC004480.7 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 7 unordered pieces.    54   0.005  1
AL390197|AL390197.19 Human DNA sequence from clone RP11-190F19 on chromosome 10.    54   0.005  1
AC122466|AC122466.2 Mus musculus BAC clone RP24-304N8 from chromosome 5, complete sequence.    38   0.012  8
AC120004|AC120004.11 Mus musculus chromosome 5 clone RP24-150N15 map 5, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    38   0.017  8
AC094533|AC094533.5 Rattus norvegicus clone CH230-4L19, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   0.13   8
AC112525|AC112525.4 Rattus norvegicus clone CH230-233J14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   0.18   10
AC122089|AC122089.4 Rattus norvegicus clone CH230-270L9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   0.32   1
dna update 2004. 2.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   440   e-122
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.17
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    36   3.3
AM285309_45(AM285309|pid:none) Spiroplasma citri GII3-3X chromos...    35   7.3
protein update 2009. 4.27
PSORT 

 psg: 0.65  gvh: 0.40  alm: 0.24  top: 0.57  tms: 0.27  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 16.0 %: vacuolar
	 16.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for AHB309 is pla
5' end seq. ID AHB309F
5' end seq. 
>AHB309F.Seq
GTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGA
TGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGA
TGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACA
GTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAAAG
ATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCA
ACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAGCA
AAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAA
GAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAA
GGAGGTTGTATTTGAAGTTAAACCATACTTTTCTCATGCAATTCTTCAAGCAACCATGGC
GGTATTTTTAATTTGGAATATTTTTTACTTTGCATATCGTGCCGGTTGGGCAATGAATNN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID AHB309Z
3' end seq. 
>AHB309Z.Seq
NNNNNNNNNNTTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATAT
ATGATTCTTAGAGCCAAGAGACNTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTA
GAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATT
TCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGT
CGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGT
GAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGT
AAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAAT
TCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGT
GCTGCACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGT
TTCTCTTTCTTTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGT
GAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGGTA
CTTGGTTTCTGGTATTACTCTTTGTGATGTCAAAGTTTGATTCCTAGA
Length of 3' end seq. 708
Connected seq. ID AHB309P
Connected seq. 
>AHB309P.Seq
GTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGA
TGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGA
TGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACA
GTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAAAG
ATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCA
ACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAGCA
AAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAA
GAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAA
GGAGGTTGTATTTGAAGTTAAACCATACTTTTCTCATGCAATTCTTCAAGCAACCATGGC
GGTATTTTTAATTTGGAATATTTTTTACTTTGCATATCGTGCCGGTTGGGCAATGAAT--
--------TTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATAT
GATTCTTAGAGCCAAGAGACNTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGA
AGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTC
ATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCG
TCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGA
AGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAA
ACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTC
AAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGC
TGCACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTT
CTCTTTCTTTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGA
AAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGGTACT
TGGTTTCTGGTATTACTCTTTGTGATGTCAAAGTTTGATTCCTAGA
Length of connected seq. 1296
Full length Seq ID -
Full length Seq. -
Length of full length seq. -