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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB301
Library AH
(Link to library)
Clone ID AHB301
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15559-1
Original site URL
Representative seq. ID AHB301P
(Link to Original site)
Representative DNA sequence 
>AHB301 (AHB301Q) /CSM/AH/AHB3-A/AHB301Q.Seq.d/
AAGTACAAATTACATTTATAAAAAACACTCTACACTATCAAGTTTTTATTTTTATTTATT
TTTAGTAGTTACACCATTATATATATTTTAATATATGTATAAAAAAAAAAXXXXXXXXXX
TTATGGCAATTTAGAATACTATGAAGATGAAACCNCNTATAGTGGTTTAATATTACGTAA
TCAATTGATTTGTTTACTCCTATTATAGAATNTTTTGTCATGANCAACCATTACCTCAAA
ATCCACGTTTANTTGGAGGCAATTCAAATAGACGTTACAATNAACGTCGTTTTGGTCGTC
CAACNGAATATGGTTACGCTCCTGATGATCCAAGAATGACCTATGAACTAATGACTCAAT
CATTGGCAAGACATTTCCCACCAATCGATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vqitfikntlhyqvfifiyf**LHHYIYFNICIKKK---

---YGNLEYYEDETXYSGLILRNQLICLLLL*nxls*xtitskstfxwrqfk*tlqxtsf
wssnxiwlrs**skndl*tndsiigktfptnr*
Translated Amino Acid sequence (All Frames) 
Frame A:
kyklhl*ktlytikflflfifssytiiyiliyv*kk---

---lwqfril*r*nxx*wfnit*sidlftpiiexfvmxnhylkihvxleaiqidvtxnvv
lvvqxnmvtllmiqe*pmn**lnhwqdishqsi

Frame B:
stnyiykkhstlssfyfylflvvtplyif*ymykkk---

---YGNLEYYEDETXYSGLILRNQLICLLLL*nxls*xtitskstfxwrqfk*tlqxtsf
wssnxiwlrs**skndl*tndsiigktfptnr*

Frame C:
vqitfikntlhyqvfifiyf**LHHYIYFNICIKKK---

---mai*ntmkmkpxivv*yyvin*fvysyyrxfchxqplpqnprlxggnsnrrynxrrf
grpteygyapddprmtyelmtqslarhfppidk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB301 (AHB301Q) /CSM/AH/AHB3-A/AHB301Q.Seq.d/                        498   e-140
SHC312 (SHC312Q) /CSM/SH/SHC3-A/SHC312Q.Seq.d/                        466   e-130
SHA556 (SHA556Q) /CSM/SH/SHA5-C/SHA556Q.Seq.d/                        466   e-130
CHQ556 (CHQ556Q) /CSM/CH/CHQ5-C/CHQ556Q.Seq.d/                        466   e-130
CHK193 (CHK193Q) /CSM/CH/CHK1-D/CHK193Q.Seq.d/                        466   e-130
CHJ882 (CHJ882Q) /CSM/CH/CHJ8-D/CHJ882Q.Seq.d/                        466   e-130
AHP611 (AHP611Q) /CSM/AH/AHP6-A/AHP611Q.Seq.d/                        466   e-130
AHP554 (AHP554Q) /CSM/AH/AHP5-C/AHP554Q.Seq.d/                        466   e-130
AHM710 (AHM710Q) /CSM/AH/AHM7-A/AHM710Q.Seq.d/                        466   e-130
AHM582 (AHM582Q) /CSM/AH/AHM5-D/AHM582Q.Seq.d/                        466   e-130
own update 2002. 9.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF414428|AF414428.1 Dictyostelium discoideum chloride channel protein ClcA (clcA) mRNA, complete cds.   337   e-138  3
AC006986|AC006986.3 Homo sapiens BAC clone RP11-155J5 from Y, complete sequence.    52   3e-04  3
AE003434|AE003434.3 Drosophila melanogaster chromosome X, section 18 of 74 of the complete sequence.    42   0.001  4
BQ734735|BQ734735.1 AGENCOURT_8149155 NICHD XGC Emb4 Xenopus laevis cDNA clone IMAGE:5570407 5', mRNA sequence.    38   0.003  2
AC014401|AC014401.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    42   0.008  2
AC104604|AC104604.7 Drosophila melanogaster X BAC RP98-18K5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    42   0.013  3
AL392110|AL392110.12 Human DNA sequence from clone RP11-29M23 on chromosome 9.    38   0.041  4
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           46   0.048  8
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  40   0.061  5
BX816822|BX816822.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone  GSLTPGH6ZF01 of Hormone Treated Callus of strain col-0 of  Arabidopsis thaliana (thale cress).    48   0.093  1
dna update 2004. 2.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54AX6) RecName: Full=Chloride channel protein A;  &AF414428_1(...    87   8e-21
protein update 2008.11.29
PSORT 

 psg: 0.85  gvh: 0.31  alm: 0.39  top: 0.33  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AHB301 is cyt
5' end seq. ID AHB301F
5' end seq. 
>AHB301F.Seq
AAGTACAAATTACATTTATAAAAAACACTCTACACTATCAAGTTTTTATTTTTATTTATT
TTTAGTAGTTACACCATTATATATATTTTAATATATGTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 120
3' end seq. ID AHB301Z
3' end seq. 
>AHB301Z.Seq
NNNNNNNNNNTTATGGCAATTTAGAATACTATGAAGATGAAACCNCNTATAGTGGTTTAA
TATTACGTAATCAATTGATTTGTTTACTCCTATTATAGAATNTTTTGTCATGANCAACCA
TTACCTCAAAATCCACGTTTANTTGGAGGCAATTCAAATAGACGTTACAATNAACGTCGT
TTTGGTCGTCCAACNGAATATGGTTACGCTCCTGATGATCCAAGAATGACCTATGAACTA
ATGACTCAATCATTGGCAAGACATTTCCCACCAATCGATAAA
Length of 3' end seq. 282
Connected seq. ID AHB301P
Connected seq. 
>AHB301P.Seq
AAGTACAAATTACATTTATAAAAAACACTCTACACTATCAAGTTTTTATTTTTATTTATT
TTTAGTAGTTACACCATTATATATATTTTAATATATGTATAAAAAAAAAA----------
TTATGGCAATTTAGAATACTATGAAGATGAAACCNCNTATAGTGGTTTAATATTACGTAA
TCAATTGATTTGTTTACTCCTATTATAGAATNTTTTGTCATGANCAACCATTACCTCAAA
ATCCACGTTTANTTGGAGGCAATTCAAATAGACGTTACAATNAACGTCGTTTTGGTCGTC
CAACNGAATATGGTTACGCTCCTGATGATCCAAGAATGACCTATGAACTAATGACTCAAT
CATTGGCAAGACATTTCCCACCAATCGATAAA
Length of connected seq. 382
Full length Seq ID -
Full length Seq. -
Length of full length seq. -