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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB262
Library AH
(Link to library)
Clone ID AHB262
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID AHB262P
(Link to Original site)
Representative DNA sequence 
>AHB262 (AHB262Q) /CSM/AH/AHB2-C/AHB262Q.Seq.d/
AAAATTTCTCTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAA
AAAAAATCATTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTT
ATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCA
TTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAAC
GAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGA
GAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGAC
AGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCG
GGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCT
GGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTT
ATTAATTCCATTGATGTAAATAAACCTTTTGTXXXXXXXXXXACAACATTCATTGGAGTT
CGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACC
ATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGAT
ATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAA
TGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACA
AATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGA
GTATTATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATT
AAATTATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCA
TCAAATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGT
GCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTT
TAAAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAAC
TAAAAATAAAATAAATAAATAAATAAATAAATG
sequence update 2002.10.25
Translated Amino Acid sequence 
kislf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPTPIDAIYDDKS
FTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEPFSRLWGSID
SKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYLRLFGGPNFL
INSIDVNKPF---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGALAYYFKIPFR
VKKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m
Translated Amino Acid sequence (All Frames) 
Frame A:
kislf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPTPIDAIYDDKS
FTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEPFSRLWGSID
SKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYLRLFGGPNFL
INSIDVNKPF---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGALAYYFKIPFR
VKKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m

Frame B:
kflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilqhq*mqymminh
lh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqmnhsqdygvv*t
vryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*sllahi*dylvvlisl
liplm*inll---

---qhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmqa*qfhqk
lflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxsyltqhhf
nimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvlllsvllpitlkylfv
*knl*vknfkkknvnlksqityv*n*nltknkink*ink

Frame C:
nfsfliffykny*kakfkikkiidkngkennitdfifvlyirifnessntnrcni***ii
yinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr*tilkimg*yrq
*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywlifkiiwws*fpy
*fh*ck*tfc---

---nihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqcklnsfirn
cssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixpi*lniis
i*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcscyrcsclll*ntfsc
ekiyr*kilkkkm*i*nhkshmckikt*lkik*ink*in
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                       1027   0.0
SHJ589 (SHJ589Q) /CSM/SH/SHJ5-D/SHJ589Q.Seq.d/                       1027   0.0
SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/                       1027   0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/                       1027   0.0
SHC758 (SHC758Q) /CSM/SH/SHC7-C/SHC758Q.Seq.d/                       1027   0.0
SHC478 (SHC478Q) /CSM/SH/SHC4-D/SHC478Q.Seq.d/                       1027   0.0
SHC410 (SHC410Q) /CSM/SH/SHC4-A/SHC410Q.Seq.d/                       1027   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1027   0.0
SHB354 (SHB354Q) /CSM/SH/SHB3-C/SHB354Q.Seq.d/                       1027   0.0
SHA494 (SHA494Q) /CSM/SH/SHA4-D/SHA494Q.Seq.d/                       1027   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1027   0.0    3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1027   0.0    4
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   4e-26  5
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    42   8e-04  14
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   0.001  13
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   0.004  15
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome.     36   0.004  9
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2.    32   0.006  16
AL935175|AL935175.6 Mouse DNA sequence from clone RP23-397E13 on chromosome 2.    38   0.008  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.028  19
dna update 2004. 2.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   315   3e-84
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   300   9e-80
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   300   9e-80
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   300   9e-80
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   300   9e-80
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   300   9e-80
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   298   2e-79
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   286   1e-75
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   286   1e-75
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   286   1e-75
protein update 2009. 4.27
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.33  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for AHB262 is exc
5' end seq. ID AHB262F
5' end seq. 
>AHB262F.Seq
AAAATTTCTCTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAA
AAAAAATCATTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTT
ATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCA
TTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAAC
GAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGA
GAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGAC
AGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCG
GGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCT
GGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTT
ATTAATTCCATTGATGTAAATAAACCTTTTGTNNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID AHB262Z
3' end seq. 
>AHB262Z.Seq
NNNNNNNNNNACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATAT
AAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGC
AATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGA
AACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGA
TAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTC
CGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATT
TCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAAN
AGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGG
TAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCG
TGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAA
TCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAAT
G
Length of 3' end seq. 661
Connected seq. ID AHB262P
Connected seq. 
>AHB262P.Seq
AAAATTTCTCTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAA
AAAAAATCATTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTT
ATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCA
TTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAAC
GAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGA
GAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGAC
AGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCG
GGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCT
GGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTT
ATTAATTCCATTGATGTAAATAAACCTTTTGT----------ACAACATTCATTGGAGTT
CGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACC
ATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGAT
ATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAA
TGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACA
AATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGA
GTATTATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATT
AAATTATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCA
TCAAATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGT
GCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTT
TAAAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAAC
TAAAAATAAAATAAATAAATAAATAAATAAATG
Length of connected seq. 1223
Full length Seq ID -
Full length Seq. -
Length of full length seq. -