AFA247
Library AF
(Link to library)
Clone ID AFA247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16254-1
Original site URL
Representative seq. ID AFA247P
(Link to Original site)
Representative DNA sequence
>AFA247 (AFA247Q) /CSM/AF/AFA2-B/AFA247Q.Seq.d/
ACTGTTGGCCTACTGGTTTAAAGGATGCCAGTATCAGNAAGATTCATTAGGTCGTATTTT
CAATGGTTCAGGTAAACCAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGA
TATTCAAGGTCAACCAATCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAAC
TGGTATCTCTGCTATTGATACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTT
CTCTGCTGCAGGTTTACCACACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTT
AGTTAAAAAATCAGGTAAAGGTGTTATTGATGATCATGAAGATAATTTTGCTATTGTATT
CGCAGCTATGGGTGTTAATATGGAAACTGCATCATTTTTCAAACGTGATTXXXXXXXXXX
CTGGTTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAATCAATAACAGACAAATCT
ACCCACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAAATCCGCCATTGGTGACG
ACATGACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTATGCCAACTATGCCATCG
GTAAAGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGCACTTTCTTCTGAAGATA
AACTCTACTTAGAATTTTTAGAACGTTTCGAATCCTAGCTTTGTCGGTCAAAACCATTAT
GAAAATCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTTATTAAGAACTTTCCCA
AGCAATCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATACTATTCACGTTCATCA
AAGGGTACTGTAGNATNCAACTAACTAANTTTAAAAANAAAAAAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
LLAYWFKGCQYQXDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQT
GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSGKGVIDDHEDNFAIVF
AAMGVNMETASFFKRD---

---GYITEGQIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANY
AIGKDVQAMKAVVGEEALSSEDKLYLEFLERFES*lcrskpl*ks*yl*figswlvfikn
fpkqspqtyh*kny*tilftfikgycxxqltxfkxkk


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllv*rmpvsxrfirsyfqwfr*ts**rskcfs*rilrysrstnqsis*slptrndsn
wylcy*yyefncswskdsnflccrfttq*ncrsnlssswfs*kir*rcy**s*r*fcyci
rsygc*ygnciifqt*---

---lvtllkvkfslivksitdksthqsmyyhhflvl*npplvtt*pvaitlksqikcmpt
mpsvkmskl*klslvrkhfllkinst*nf*nvsnpsfvgqnhyenrdifnsldlgwsllr
tfpsnllkritektikqyysrsskgtvxxn*lxlkxkk

Frame B:
LLAYWFKGCQYQXDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQT
GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSGKGVIDDHEDNFAIVF
AAMGVNMETASFFKRD---

---wlhy*rsnfh*ssnq*qtnlptnqcititfssyeirhw*rhdpwrsl*slksnvcql
chr*rcpsyescrw*gstff*r*tllrifrtfrilalsvktimkivislihwilvgly*e
lsqaissnvslkkllnntihvhqrvl*xxtn*x*kxk

Frame C:
cwptglkdasixkih*vvfsmvqvnqlikvqmf*lknt*ifkvnqsihqlefthkk*fkl
vslllil*iqllvvkrfqfsllqvyhtmklplkfvvklv*lknqvkvllmimkiilllys
qlwvliwklhhfsnvi---

---GYITEGQIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANY
AIGKDVQAMKAVVGEEALSSEDKLYLEFLERFES*lcrskpl*ks*yl*figswlvfikn
fpkqspqtyh*kny*tilftfikgycxxqltxfkxkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFA247 (AFA247Q) /CSM/AF/AFA2-B/AFA247Q.Seq.d/ 1645 0.0
VFM269 (VFM269Q) /CSM/VF/VFM2-C/VFM269Q.Seq.d/ 854 0.0
VFF339 (VFF339Q) /CSM/VF/VFF3-B/VFF339Q.Seq.d/ 852 0.0
VFD313 (VFD313Q) /CSM/VF/VFD3-A/VFD313Q.Seq.d/ 852 0.0
SLH888 (SLH888Q) /CSM/SL/SLH8-D/SLH888Q.Seq.d/ 852 0.0
SLF335 (SLF335Q) /CSM/SL/SLF3-B/SLF335Q.Seq.d/ 852 0.0
SLD112 (SLD112Q) /CSM/SL/SLD1-A/SLD112Q.Seq.d/ 852 0.0
SLC323 (SLC323Q) /CSM/SL/SLC3-A/SLC323Q.Seq.d/ 852 0.0
SLB692 (SLB692Q) /CSM/SL/SLB6-D/SLB692Q.Seq.d/ 852 0.0
SLB190 (SLB190Q) /CSM/SL/SLB1-D/SLB190Q.Seq.d/ 852 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***. 543 0.0 5
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 543 0.0 5
U63317|U63317.1 Dictyostelium discoideum vacuolar H+ ATPase B subunit (dvacB) mRNA, partial cds. 504 0.0 3
X54875|X54875.1 C. tropicalis gene for vacuolar ATPase subunit b. 155 4e-59 5
AY125532|AY125532.1 Arabidopsis thaliana At1g76030/T4O12_24 mRNA, complete cds. 98 1e-42 4
AY094424|AY094424.1 Arabidopsis thaliana At1g76030/T4O12_24 mRNA, complete cds. 98 3e-42 4
J04185|J04185.1 Arabidopsis thaliana nucleotide-binding subunit of vacuolar ATPase mRNA, complete cds. 98 3e-42 4
AC007396|AC007396.6 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I, complete sequence. 98 2e-37 4
BI509187|BI509187.1 BB170005B20H04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170005B20H04 5', mRNA sequence. 155 3e-37 2
X69638|X69638.1 S.pombe gene for vacuolar H+-ATPase, subunit B. 88 1e-36 6
dna update 2003. 7.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q76NU1) RecName: Full=V-type proton ATPase subunit B; ... 247 7e-71
U63317_1(U63317|pid:none) Dictyostelium discoideum vacuolar H+ A... 178 8e-69
AY641405_1(AY641405|pid:none) Entamoeba histolytica vacuolar ATP... 220 4e-56
DQ507282_1(DQ507282|pid:none) Belgica antarctica clone Ba-U06 va... 220 5e-56
AY197611_1(AY197611|pid:none) Artemia franciscana vacuolar proto... 218 2e-55
EU727173_1(EU727173|pid:none) Bombyx mori strain NB vacuolar ATP... 218 2e-55
AY169409_1(AY169409|pid:none) Spodoptera littoralis H(+)-ATPase ... 218 2e-55
AF037468_1(AF037468|pid:none) Culex pipiens quinquefasciatus B s... 218 2e-55
(P31410) RecName: Full=V-type proton ATPase subunit B; ... 218 2e-55
DQ988716_1(DQ988716|pid:none) Strigamia maritima isolate SJB51 v... 214 3e-54
protein update 2009. 3.26
PSORT

psg: 0.60 gvh: 0.38 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFA247 is cyt

5' end seq. ID AFA247F
5' end seq.
>AFA247F.Seq
ACTGTTGGCCTACTGGTTTAAAGGATGCCAGTATCAGNAAGATTCATTAGGTCGTATTTT
CAATGGTTCAGGTAAACCAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGA
TATTCAAGGTCAACCAATCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAAC
TGGTATCTCTGCTATTGATACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTT
CTCTGCTGCAGGTTTACCACACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTT
AGTTAAAAAATCAGGTAAAGGTGTTATTGATGATCATGAAGATAATTTTGCTATTGTATT
CGCAGCTATGGGTGTTAATATGGAAACTGCATCATTTTTCAAACGTGATT----------
Length of 5' end seq. 410
3' end seq. ID AFA247Z
3' end seq.
>AFA247Z.Seq
----------CTGGTTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAATCAATAAC
AGACAAATCTACCCACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAAATCCGCC
ATTGGTGACGACATGACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTATGCCAAC
TATGCCATCGGTAAAGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGCACTTTCT
TCTGAAGATAAACTCTACTTAGAATTTTTAGAACGTTTCGAATCCTAGCTTTGTCGGTCA
AAACCATTATGAAAATCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTTATTAAG
AACTTTCCCAAGCAATCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATACTATTC
ACGTTCATCAAAGGGTACTGTAGNATNCAACTAACTAANTTTAAAAANAAAAAAA
Length of 3' end seq. 465
Connected seq. ID AFA247P
Connected seq.
>AFA247P.Seq
ACTGTTGGCCTACTGGTTTAAAGGATGCCAGTATCAGNAAGATTCATTAGGTCGTATTTT
CAATGGTTCAGGTAAACCAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGA
TATTCAAGGTCAACCAATCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAAC
TGGTATCTCTGCTATTGATACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTT
CTCTGCTGCAGGTTTACCACACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTT
AGTTAAAAAATCAGGTAAAGGTGTTATTGATGATCATGAAGATAATTTTGCTATTGTATT
CGCAGCTATGGGTGTTAATATGGAAACTGCATCATTTTTCAAACGTGATT----------
CTGGTTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAATCAATAACAGACAAATCT
ACCCACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAAATCCGCCATTGGTGACG
ACATGACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTATGCCAACTATGCCATCG
GTAAAGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGCACTTTCTTCTGAAGATA
AACTCTACTTAGAATTTTTAGAACGTTTCGAATCCTAGCTTTGTCGGTCAAAACCATTAT
GAAAATCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTTATTAAGAACTTTCCCA
AGCAATCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATACTATTCACGTTCATCA
AAGGGTACTGTAGNATNCAACTAACTAANTTTAAAAANAAAAAAA
Length of connected seq. 875
Full length Seq ID -
Full length Seq. -
Length of full length seq. -