>AHB245 (AHB245Q) /CSM/AH/AHB2-B/AHB245Q.Seq.d/
XXXXXXXXXXTCATTGAAAAGGATTTAAAATCTGCCGAAGAATATACAAAGAGTGTCATT
AGTGATCTCTTACAGAATCGTTTAGATCCTTCAATGTTGGTAATTACAAAAGCTCTCTCA
AAAACTCAATACAAAGGAAAGGTAATCCATAATGAATTGGCTAGAAAAATGAGAGCTAGA
GATCCGGCAACAGCTCCAAATTTAGGTGATCGTGTGCCTTATGTGGTCATTCAAGGCTCA
AAGGGTGCACCAATCTATGAGAAAGCTGAAGATCCACTTTATGCTTTGGAACATAATATC
CTTTTGGATTGTCAATACTATTTGGATAAACAATTGAAAGCACCATTGATTCGTATTTTC
AAACCAATTATGTCAAATCCTGATTTAATTTTCCATGGTGAACATACTAGAACCATTGCT
CAATCAACACTCAGTGATAATAACAAAGGTTTCTTTGGTACTTTGAAAAAGAAAAAAGTC
TGTATGAATTGTCCAAAGGAATTAACTGATACAGAATCTACAACTTGTATAAATTGTCAA
CATAAAGAAGCCTCTCTCTATCAAACCTCTTTGGAAAAAGTTACAAGTTTAGAAACTAAA
TTCTCTGAAGCTTGGACTCAAT

---IEKDLKSAEEYTKSVISDLLQNRLDPSMLVITKALSKTQYKGKVIHNELARKMRARD
PATAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIFK
PIMSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQH
KEASLYQTSLEKVTSLETKFSEAWTQ

Frame A:
---h*kgfkicrriykech**sltesfrsfnvgnyksslknsiqrkgnp**ig*knes*r
sgnsskfr*scalcghsrlkgctnl*es*rstlcfgt*ypfglsilfg*tiestidsyfq
tnyvks*fnfpw*ty*nhcsintq***qrflwyfekekslyelskgin*yriynlyklst
*rslslsnlfgksykfrn*il*slds


Frame B:
---IEKDLKSAEEYTKSVISDLLQNRLDPSMLVITKALSKTQYKGKVIHNELARKMRARD
PATAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIFK
PIMSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQH
KEASLYQTSLEKVTSLETKFSEAWTQ


Frame C:
---lkri*nlpkniqrvslvisyriv*ilqcw*lqklsqklntker*simnwlek*elei
rqqlqi*vivclmwsfkaqrvhqsmrklkihfmlwniisfwivntiwinn*khh*fvfsn
qlcqili*fsmvnilepllnqhsviitkvslvl*krkksv*ivqrn*liqnlqlv*ivni
kkplsikplwkklqv*klnslklgln

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB245 (AHB245Q) /CSM/AH/AHB2-B/AHB245Q.Seq.d/                       1142   0.0
VHI436 (VHI436Q) /CSM/VH/VHI4-B/VHI436Q.Seq.d/                       1134   0.0
VHI193 (VHI193Q) /CSM/VH/VHI1-D/VHI193Q.Seq.d/                       1134   0.0
SHL759 (SHL759Q) /CSM/SH/SHL7-C/SHL759Q.Seq.d/                       1134   0.0
SHK857 (SHK857Q) /CSM/SH/SHK8-C/SHK857Q.Seq.d/                       1134   0.0
SHJ780 (SHJ780Q) /CSM/SH/SHJ7-D/SHJ780Q.Seq.d/                       1134   0.0
SHD876 (SHD876Q) /CSM/SH/SHD8-D/SHD876Q.Seq.d/                       1134   0.0
SHD311 (SHD311Q) /CSM/SH/SHD3-A/SHD311Q.Seq.d/                       1134   0.0
SHB296 (SHB296Q) /CSM/SH/SHB2-D/SHB296Q.Seq.d/                       1134   0.0
CHM589 (CHM589Q) /CSM/CH/CHM5-D/CHM589Q.Seq.d/                       1134   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AI615569|AI615569.1 vl18f04.y1 Stratagene mouse Tcell 937311 Mus musculus cDNA clone IMAGE:972607 5' similar to TR:Q14436 Q14436 256 KD GOLGIN. ;, mRNA sequence.    48   0.14   1
AC099142|AC099142.5 Rattus norvegicus clone CH230-51G12, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.56   1
AC107007|AC107007.4 Rattus norvegicus clone CH230-202D17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.56   1
AC104386|AC104386.1 Homo sapiens chromosome 15 clone CTD-2545N7 map 15, LOW-PASS SEQUENCE SAMPLING.    36   1.1    3
BS000059|BS000059.1 Pan troglodytes chromosome 22 clone:RP43-022N17, map 22, complete sequences.    40   1.2    3
AC098994|AC098994.6 Rattus norvegicus clone CH230-152K3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    32   1.5    7
AL929131|AL929131.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-286O17.    40   1.6    3
AP003133|AP003133.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 5/10.    34   1.7    8
AC138119|AC138119.2 Mus musculus chromosome UNK clone RP23-307D8, WORKING DRAFT SEQUENCE, 14 unordered pieces.    32   2.1    8
AL669891|AL669891.12 Mouse DNA sequence from clone RP23-271F3 on chromosome X.    44   2.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54N97) RecName: Full=DNA polymerase delta catalytic subunit;  ...   406   e-112
AB240141_1(AB240141|pid:none) Chlorella pyrenoidosa polD mRNA fo...   201   1e-50
(Q9LRE6) RecName: Full=DNA polymerase delta catalytic subunit;  ...   194   1e-48
AE017351_51(AE017351|pid:none) Cryptococcus neoformans var. neof...   194   2e-48
L07734_1(L07734|pid:none) Schizosaccharomyces pombe DNA polymera...   192   8e-48
(P30316) RecName: Full=DNA polymerase delta catalytic subunit;  ...   192   8e-48
S19661(S19661) DNA-directed DNA polymerase (EC 2.7.7.7) III larg...   189   5e-47
DQ160246_1(DQ160246|pid:none) Arabidopsis thaliana DNA-directed ...   188   9e-47
AP007162_156(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   188   1e-46
BC081093_1(BC081093|pid:none) Xenopus laevis polymerase (DNA dir...   185   8e-46

 psg: 0.75  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for AHB245 is cyt

>AHB245Z.Seq
NNNNNNNNNNTCATTGAAAAGGATTTAAAATCTGCCGAAGAATATACAAAGAGTGTCATT
AGTGATCTCTTACAGAATCGTTTAGATCCTTCAATGTTGGTAATTACAAAAGCTCTCTCA
AAAACTCAATACAAAGGAAAGGTAATCCATAATGAATTGGCTAGAAAAATGAGAGCTAGA
GATCCGGCAACAGCTCCAAATTTAGGTGATCGTGTGCCTTATGTGGTCATTCAAGGCTCA
AAGGGTGCACCAATCTATGAGAAAGCTGAAGATCCACTTTATGCTTTGGAACATAATATC
CTTTTGGATTGTCAATACTATTTGGATAAACAATTGAAAGCACCATTGATTCGTATTTTC
AAACCAATTATGTCAAATCCTGATTTAATTTTCCATGGTGAACATACTAGAACCATTGCT
CAATCAACACTCAGTGATAATAACAAAGGTTTCTTTGGTACTTTGAAAAAGAAAAAAGTC
TGTATGAATTGTCCAAAGGAATTAACTGATACAGAATCTACAACTTGTATAAATTGTCAA
CATAAAGAAGCCTCTCTCTATCAAACCTCTTTGGAAAAAGTTACAAGTTTAGAAACTAAA
TTCTCTGAAGCTTGGACTCAAT