AHB236
Library AH
(Link to library)
Clone ID AHB236
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15711-1
Original site URL
Representative seq. ID AHB236P
(Link to Original site)
Representative DNA sequence
>AHB236 (AHB236Q) /CSM/AH/AHB2-B/AHB236Q.Seq.d/
CACTGTTGGCCTACTGGAATGGTGGTTTAAATATTAGGGCAACACTTAAAATATTGAATA
TTTTAGTTTGTTCAGGTAATAAATTGGTTGAAACATTTGAAAGATGTCTAAATGAATTAA
CTTCAACTCGTCCTTTCACAATTATTATACCACAATTATTTGCAAGATTAAGTCATCCCG
ATACATTTGTTCAAAAATATGTTGTTGAAATTTTAAATAGAATTGGTAGAGATAATCCAA
ATAAAATAGTTTATCAAACTATTGTTGGTTCTTTAAATTTTACAAATACAAATAATAATA
ATAATAGTTCTTGTGCTGCTGCCACTACTGATGATGGTTTAGATATTGAATTATTACAAA
AACAATATCCAAATTATTTACAAATTTTAAATATTAAAGAGAATCTATTAAAACATTCAG
AATTATTAGTAAAAGAGACAGAGACACTCATTTATCAATTAGGTAAACTTACAACATTGT
GGGATGATAATTGGCAATATTTCATTGAACAAATTCAAGGTTGGGTCTATATTAATACTA
AACAATGGAATGATGACTATCAACAATTGAAAGCCACAATAAAGAATCCAACCATACTAA
AACATACTCTAAAGAAAAXXXXXXXXXXCCATNATCAATTTNTTCNAATAATACCAANTC
CTNTAATAATAATAATAATAATAATNATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAAAGATCAAGATAGTGATTCAAGTCAAAGTCAAGAAGATGAAGATAATAT
NGTTGTNGAAGGTGAAGGAGGTGAAGNAGGTGAAGGTGATATTGATGNATTGANTTTAGT
TCAAGATTCNTCAAATGGAAAGNANGCATTTAAGAGTATCCAAGGTTTAACTGTTGTCAA
CCAAGTGAGCCTANAATTAGAAGGTACAGNCCAGCCANCTATCAANNCCNGATCCCATNG
GTCTTATCATAAGAGATATCCATGAATGTTGAAAATCTATCC
sequence update 2002.10.25
Translated Amino Acid sequence
LLAYWNGGLNIRATLKILNILVCSGNKLVETFERCLNELTSTRPFTIIIPQLFARLSHPD
TFVQKYVVEILNRIGRDNPNKIVYQTIVGSLNFTNTNNNNNSSCAAATTDDGLDIELLQK
QYPNYLQILNIKENLLKHSELLVKETETLIYQLGKLTTLWDDNWQYFIEQIQGWVYINTK
QWNDDYQQLKATIKNPTILKHTLKK---

---PXSIXSNNTXSXNNNNNNNXNNNNNNNNNNNNNNKDQDSDSSQSQEDEDNXVVEGEG
GEXGEGDIDXLXLVQDSSNGKXAFKSIQGLTVVNQVSLXLEGTXQPXIXXXSHXSYHKRY
P*mlkiy


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgmvv*ilgqhlky*if*fvqvinwlkhlkdv*mn*lqlvlsqllyhnylqd*vip
ihlfknmllkf*ielveiiqik*fiklllvl*ilqiqiiiiivlvllpllmmv*ilnyyk
nniqiiykf*ilkriy*niqny**krqrhsfin*vnlqhcgmiignislnkfkvgsilil
nngmmtinn*kpq*riqpy*nil*rk---

---PXSIXSNNTXSXNNNNNNNXNNNNNNNNNNNNNNKDQDSDSSQSQEDEDNXVVEGEG
GEXGEGDIDXLXLVQDSSNGKXAFKSIQGLTVVNQVSLXLEGTXQPXIXXXSHXSYHKRY
P*mlkiy

Frame B:
tvgllewwfky*gnt*nieyfslfr**ig*ni*kmsk*infnssfhnyyttiickikssr
yicskicc*nfk*nw*r*sk*nslsnycwffkfykyk*****flccchy**wfry*iitk
tisklftnfky*resiktfriiskrdrdthlsir*tynivg**laifh*tnsrlgly*y*
tme**lstieshnkesnhtktyske---

---hxqfxxiipxpxiiiiiixiiiiiiiiiiiiiiikikiviqvkvkkmkiixlxkvke
vkxvkvilmx*x*fkixqmexxhlrvskv*llstk*axn*kvqxsxlsxpdpxgliirdi
hec*ksi

Frame C:
LLAYWNGGLNIRATLKILNILVCSGNKLVETFERCLNELTSTRPFTIIIPQLFARLSHPD
TFVQKYVVEILNRIGRDNPNKIVYQTIVGSLNFTNTNNNNNSSCAAATTDDGLDIELLQK
QYPNYLQILNIKENLLKHSELLVKETETLIYQLGKLTTLWDDNWQYFIEQIQGWVYINTK
QWNDDYQQLKATIKNPTILKHTLKK---

---xinxfx*yqxl*******x***************rsr**fksksrr*r*yxcxr*rr
*xr*r*y*xixfssrfxkwkxxi*eyprfnccqpsepxirryxpaxyqxxipxvls*eis
mnvenls

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AHB236 (AHB236Q) /CSM/AH/AHB2-B/AHB236Q.Seq.d/ 1229 0.0
SLD526 (SLD526Q) /CSM/SL/SLD5-B/SLD526Q.Seq.d/ 52 2e-05
VHA162 (VHA162Q) /CSM/VH/VHA1-C/VHA162Q.Seq.d/ 46 0.001
FC-BH04 (FC-BH04Q) /CSM/FC/FC-BH/FC-BH04Q.Seq.d/ 46 0.001
VHQ329 (VHQ329Q) /CSM/VH/VHQ3-B/VHQ329Q.Seq.d/ 44 0.004
VHQ168 (VHQ168Q) /CSM/VH/VHQ1-C/VHQ168Q.Seq.d/ 44 0.004
VHP261 (VHP261Q) /CSM/VH/VHP2-C/VHP261Q.Seq.d/ 44 0.004
VHO694 (VHO694Q) /CSM/VH/VHO6-D/VHO694Q.Seq.d/ 44 0.004
VHN641 (VHN641Q) /CSM/VH/VHN6-B/VHN641Q.Seq.d/ 44 0.004
VHM469 (VHM469Q) /CSM/VH/VHM4-C/VHM469Q.Seq.d/ 44 0.004

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 1191 0.0 5
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 42 3e-07 5
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 42 9e-07 12
BX538352|BX538352.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4. 32 5e-06 15
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence. 36 9e-06 12
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 44 1e-05 13
AX344552|AX344552.1 Sequence 3 from Patent WO0200932. 46 2e-05 12
AC021454|AC021454.6 Homo sapiens chromosome 11 clone RP11-135C4 map 11, WORKING DRAFT SEQUENCE, 10 unordered pieces. 52 3e-05 3
BX530081|BX530081.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-121B13. 36 3e-05 9
AC100797|AC100797.4 Homo sapiens chromosome 8, clone RP11-43A14, complete sequence. 52 3e-05 4
dna update 2004. 2.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T28923(T28923)hypothetical protein C48B6.6 - Caenorhabditis eleg... 66 2e-09
U97189_3(U97189|pid:none) Caenorhabditis elegans cosmid C48B6, c... 66 2e-09
(O01510) RecName: Full=Serine/threonine-protein kinase smg-1; ... 66 2e-09
AC117988_21(AC117988|pid:none) Oryza sativa chromosome 3 BAC OSJ... 65 3e-09
AP008209_2566(AP008209|pid:none) Oryza sativa (japonica cultivar... 65 3e-09
AF395444_1(AF395444|pid:none) Homo sapiens PI-3-kinase ATX mRNA,... 65 3e-09
AB061371_1(AB061371|pid:none) Homo sapiens smg-1 mRNA for phosph... 65 3e-09
AY014957_1(AY014957|pid:none) Homo sapiens PI-3-kinase-related k... 65 3e-09
AF186377_1(AF186377|pid:none) Homo sapiens LIP isoform of BLIP (... 65 3e-09
(Q8BKX6) RecName: Full=Serine/threonine-protein kinase SMG1; ... 65 3e-09
protein update 2009. 4.27
PSORT

psg: 0.81 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: peroxisomal
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for AHB236 is cyt

5' end seq. ID AHB236F
5' end seq.
>AHB236F.Seq
CACTGTTGGCCTACTGGAATGGTGGTTTAAATATTAGGGCAACACTTAAAATATTGAATA
TTTTAGTTTGTTCAGGTAATAAATTGGTTGAAACATTTGAAAGATGTCTAAATGAATTAA
CTTCAACTCGTCCTTTCACAATTATTATACCACAATTATTTGCAAGATTAAGTCATCCCG
ATACATTTGTTCAAAAATATGTTGTTGAAATTTTAAATAGAATTGGTAGAGATAATCCAA
ATAAAATAGTTTATCAAACTATTGTTGGTTCTTTAAATTTTACAAATACAAATAATAATA
ATAATAGTTCTTGTGCTGCTGCCACTACTGATGATGGTTTAGATATTGAATTATTACAAA
AACAATATCCAAATTATTTACAAATTTTAAATATTAAAGAGAATCTATTAAAACATTCAG
AATTATTAGTAAAAGAGACAGAGACACTCATTTATCAATTAGGTAAACTTACAACATTGT
GGGATGATAATTGGCAATATTTCATTGAACAAATTCAAGGTTGGGTCTATATTAATACTA
AACAATGGAATGATGACTATCAACAATTGAAAGCCACAATAAAGAATCCAACCATACTAA
AACATACTCTAAAGAAAANNNNNNNNNN
Length of 5' end seq. 628
3' end seq. ID AHB236Z
3' end seq.
>AHB236Z.Seq
NNNNNNNNNNCCATNATCAATTTNTTCNAATAATACCAANTCCTNTAATAATAATAATAA
TAATAATNATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAGATCA
AGATAGTGATTCAAGTCAAAGTCAAGAAGATGAAGATAATATNGTTGTNGAAGGTGAAGG
AGGTGAAGNAGGTGAAGGTGATATTGATGNATTGANTTTAGTTCAAGATTCNTCAAATGG
AAAGNANGCATTTAAGAGTATCCAAGGTTTAACTGTTGTCAACCAAGTGAGCCTANAATT
AGAAGGTACAGNCCAGCCANCTATCAANNCCNGATCCCATNGGTCTTATCATAAGAGATA
TCCATGAATGTTGAAAATCTATCC
Length of 3' end seq. 384
Connected seq. ID AHB236P
Connected seq.
>AHB236P.Seq
CACTGTTGGCCTACTGGAATGGTGGTTTAAATATTAGGGCAACACTTAAAATATTGAATA
TTTTAGTTTGTTCAGGTAATAAATTGGTTGAAACATTTGAAAGATGTCTAAATGAATTAA
CTTCAACTCGTCCTTTCACAATTATTATACCACAATTATTTGCAAGATTAAGTCATCCCG
ATACATTTGTTCAAAAATATGTTGTTGAAATTTTAAATAGAATTGGTAGAGATAATCCAA
ATAAAATAGTTTATCAAACTATTGTTGGTTCTTTAAATTTTACAAATACAAATAATAATA
ATAATAGTTCTTGTGCTGCTGCCACTACTGATGATGGTTTAGATATTGAATTATTACAAA
AACAATATCCAAATTATTTACAAATTTTAAATATTAAAGAGAATCTATTAAAACATTCAG
AATTATTAGTAAAAGAGACAGAGACACTCATTTATCAATTAGGTAAACTTACAACATTGT
GGGATGATAATTGGCAATATTTCATTGAACAAATTCAAGGTTGGGTCTATATTAATACTA
AACAATGGAATGATGACTATCAACAATTGAAAGCCACAATAAAGAATCCAACCATACTAA
AACATACTCTAAAGAAAA----------CCATNATCAATTTNTTCNAATAATACCAANTC
CTNTAATAATAATAATAATAATAATNATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAAAGATCAAGATAGTGATTCAAGTCAAAGTCAAGAAGATGAAGATAATAT
NGTTGTNGAAGGTGAAGGAGGTGAAGNAGGTGAAGGTGATATTGATGNATTGANTTTAGT
TCAAGATTCNTCAAATGGAAAGNANGCATTTAAGAGTATCCAAGGTTTAACTGTTGTCAA
CCAAGTGAGCCTANAATTAGAAGGTACAGNCCAGCCANCTATCAANNCCNGATCCCATNG
GTCTTATCATAAGAGATATCCATGAATGTTGAAAATCTATCC
Length of connected seq. 992
Full length Seq ID -
Full length Seq. -
Length of full length seq. -