NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB229
Library AH
(Link to library)
Clone ID AHB229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16372-1
Original site URL
Representative seq. ID AHB229P
(Link to Original site)
Representative DNA sequence 
>AHB229 (AHB229Q) /CSM/AH/AHB2-B/AHB229Q.Seq.d/
ATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACTCAA
GATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACGATG
ATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTACAAC
CGTACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACAAAATTTGCTA
CTGGAAGGTATTTATTTTTTATTTATTAATTTATTAGTTTTCTTTTTTTATTTTAATTAT
CATTTATTTTTTAGATGTTTGACAACAAAGAGAACAGTTCCCATATACAATTTTTTGGCT
CTCACGTACTTTGGCAAACCTGTGAAAGTATGGCACTGCGATAATGGACGTGAATTTAAA
AACAAAGTCCAAAAAGAATTCCTAAAACTTTTTCCAGGCTCCAAGTCAGCACATGGAGCT
CCTCGTACACCAACAACTCAAGGTATGGTAGAAAGATTGAATCGAACTATCAAGGAGAGG
ATCTCAAAATTAAAACAACAAGAGTATGATATTGTGAACAATATAAATTATCGATATGTT
TATTAATTXXXXXXXXXXTTAACAATCCATCAAATATTCCACTTATCATTAAGGATAATC
CATTTCAACACNAANTCAATAATGAAATGGAACAAGAAGAAATACTCCCATTTTTAAATA
ATAATCCAGNAGCGCNNAATTTAATGAATTGTTTGAGAAAGGATATGAATTTAAAAGAAA
TAGTACCACCAATACCTCAAGTGCAAATAATACCATCGTATACTATACCACAATCTTGGT
AGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCCTCATAAGATACCAATTGTT
AATAAACCTCCTTTAAAATCACATTATAAACCATCCAAATCACCTNTCAAATCACCATCC
ATTTCACCTTCCAATTCACCATTTAAATCACCATTTAAATCACCTTCCAAATCACCATTT
AAATCACCTTCCAAATCACCATCCATTTCACCTTACAATTCNCCATTTAAATCACCTTNC
AATTCACCTTTTAAATCACCATTTNNATCACCTTCCAAATCACGGNCAATAGGAAAAATC
GTTAATGTGATACCTTCGAAAAAAAGTTGCAAAAAACAAAAGTTAACAAGGACA
sequence update 2002.10.25
Translated Amino Acid sequence 
rikgitkdfapivdteeysrlvydltsikgehkekvtydddnekiltklddliqydsvqp
ydtdvvyiilcidsftkfatgrylffiy*fisflflf*lsfif*mfdnkensshiqffgs
hvlwqtcesmalr*wt*i*kqspkripktfsrlqvstwsssytnnsrygrkiesnyqged
lkikttrv*YCEQYKLSICLLI---

---NNPSNIPLIIKDNPFQHXXNNEMEQEEILPFLNNNPXAXNLMNCLRKDMNLKEIVPP
IPQVQIIPSYTIPQSW*wysnnc*txqrpss*dtnc**tsfkitl*tiqitxqitihftf
qfti*iti*itfqiti*itfqitihftlqfxi*itxqftf*itixitfqitxnrknr*cd
tfekklqktkvnkd
Translated Amino Acid sequence (All Frames) 
Frame A:
ie*kv*qrillql*iprntqdwfmi*hqlkvnikkklhtmmimkry*ln*milsnmtlyn
rttpmlftlfya*illqnlllegiyflfinllvfffyfnyhlffrclttkrtvpiynfla
ltyfgkpvkvwhcdngrefknkvqkeflklfpgsksahgaprtpttqgmverlnrtiker
isklkqqeydivnninyryvy*---

---ltihqifhlslriihfntxsimkwnkkkyshf*iiiqxrxi**iv*eri*i*kk*yh
qylkck*yhrilyhnlgsgivttvkrxrgrphkipivnkpplkshykpskspxkspsisp
snspfkspfkspskspfkspskspsispynspfkspxnspfkspfxspsksrxigkivnv
ipskksckkqkltrt

Frame B:
*nkrynkgfcsncryrgilkigl*fnin*r*t*rksyir****kdtn*tr*sypi*lctt
vrhrcclhysmhrffykicywkvfifylliy*fsffiliiiyfldv*qqreqfpytifwl
srtlanl*kygtaimdvnlktkskkns*nffqapsqhmellvhqqlkvw*kd*ielsrrg
sqn*nnksmil*ti*iidmfin---

---*qsikystyh*g*sistxxq**ngtrrntpifk**sxsaxfnelfekgyefkrnstt
ntssanntivyyttilvvv**qllnvseavliryqllinll*nhiinhpnhlsnhhpfhl
pihhlnhhlnhlpnhhlnhlpnhhpfhltixhlnhlxihllnhhxxhlpnhgq*ekslm*
ylrkkvaknks*qg

Frame C:
rikgitkdfapivdteeysrlvydltsikgehkekvtydddnekiltklddliqydsvqp
ydtdvvyiilcidsftkfatgrylffiy*fisflflf*lsfif*mfdnkensshiqffgs
hvlwqtcesmalr*wt*i*kqspkripktfsrlqvstwsssytnnsrygrkiesnyqged
lkikttrv*YCEQYKLSICLLI---

---NNPSNIPLIIKDNPFQHXXNNEMEQEEILPFLNNNPXAXNLMNCLRKDMNLKEIVPP
IPQVQIIPSYTIPQSW*wysnnc*txqrpss*dtnc**tsfkitl*tiqitxqitihftf
qfti*iti*itfqiti*itfqitihftlqfxi*itxqftf*itixitfqitxnrknr*cd
tfekklqktkvnkd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB229 (AHB229Q) /CSM/AH/AHB2-B/AHB229Q.Seq.d/                       1544   0.0
VHQ196 (VHQ196Q) /CSM/VH/VHQ1-D/VHQ196Q.Seq.d/                        926   0.0
VHP322 (VHP322Q) /CSM/VH/VHP3-A/VHP322Q.Seq.d/                        926   0.0
VHA379 (VHA379Q) /CSM/VH/VHA3-D/VHA379Q.Seq.d/                        926   0.0
AHQ522 (AHQ522Q) /CSM/AH/AHQ5-A/AHQ522Q.Seq.d/                        926   0.0
AHQ286 (AHQ286Q) /CSM/AH/AHQ2-D/AHQ286Q.Seq.d/                        926   0.0
AHJ566 (AHJ566Q) /CSM/AH/AHJ5-C/AHJ566Q.Seq.d/                        926   0.0
AHH245 (AHH245Q) /CSM/AH/AHH2-B/AHH245Q.Seq.d/                        926   0.0
AHG491 (AHG491Q) /CSM/AH/AHG4-D/AHG491Q.Seq.d/                        926   0.0
AHR206 (AHR206Q) /CSM/AH/AHR2-A/AHR206Q.Seq.d/                        922   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U57081|U57081.1 Dictyostelium discoideum Tdd-4 transposable element encodes putative transposition inhibitor and putative transposase, complete cds.   585   0.0    6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   585   0.0    13
AF298206|AF298206.2 Dictyostelium discoideum transposon Tdd-5, complete sequence.    66   3e-27  7
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    58   3e-04  2
AP003193|AP003193.2 Clostridium perfringens str. 13 DNA, complete genome, section 9/10.    36   0.002  13
BU464410|BU464410.1 603369110F1 CSEQRBN19 Gallus gallus cDNA clone ChEST273c3 5', mRNA sequence.    40   0.004  2
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    38   0.007  13
AL682152|AL682152.2 Xenopus tropicalis EST, clone TGas060h18 5'.    32   0.007  4
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.009  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.010  14
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   177   1e-86
U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   177   1e-86
AY634221_2(AY634221|pid:none) Oikopleura dioica transposon LTR r...    52   3e-05
EU839608_2(EU839608|pid:none) HIV-1 isolate 01TT.CRC50069 from T...    48   7e-04
EU908751_1(EU908751|pid:none) HIV-1 isolate pt6w20 from Italy in...    47   0.001
DQ354122_2(DQ354122|pid:none) HIV-1 isolate MU2003 subtype CRF01...    46   0.002
EU031915_2(EU031915|pid:none) HIV-1 isolate 07MYKLD49 from Malay...    46   0.002
EU908759_1(EU908759|pid:none) HIV-1 isolate pt4bl from Italy int...    46   0.002
DQ054367_1(DQ054367|pid:none) HIV-1 isolate 04KBH8 from South Ko...    46   0.002
AB254148_2(AB254148|pid:none) Human immunodeficiency virus 1 pro...    46   0.003
protein update 2009. 4.27
PSORT 

 psg: 0.88  gvh: 0.34  alm: 0.37  top: 0.37  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AHB229 is cyt
5' end seq. ID AHB229F
5' end seq. 
>AHB229F.Seq
ATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACTCAA
GATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACGATG
ATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTACAAC
CGTACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACAAAATTTGCTA
CTGGAAGGTATTTATTTTTTATTTATTAATTTATTAGTTTTCTTTTTTTATTTTAATTAT
CATTTATTTTTTAGATGTTTGACAACAAAGAGAACAGTTCCCATATACAATTTTTTGGCT
CTCACGTACTTTGGCAAACCTGTGAAAGTATGGCACTGCGATAATGGACGTGAATTTAAA
AACAAAGTCCAAAAAGAATTCCTAAAACTTTTTCCAGGCTCCAAGTCAGCACATGGAGCT
CCTCGTACACCAACAACTCAAGGTATGGTAGAAAGATTGAATCGAACTATCAAGGAGAGG
ATCTCAAAATTAAAACAACAAGAGTATGATATTGTGAACAATATAAATTATCGATATGTT
TATTAATTNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID AHB229Z
3' end seq. 
>AHB229Z.Seq
NNNNNNNNNNTTAACAATCCATCAAATATTCCACTTATCATTAAGGATAATCCATTTCAA
CACNAANTCAATAATGAAATGGAACAAGAAGAAATACTCCCATTTTTAAATAATAATCCA
GNAGCGCNNAATTTAATGAATTGTTTGAGAAAGGATATGAATTTAAAAGAAATAGTACCA
CCAATACCTCAAGTGCAAATAATACCATCGTATACTATACCACAATCTTGGTAGTGGTAT
AGTAACAACTGTTAAACGTNTCAGAGGCCGTCCTCATAAGATACCAATTGTTAATAAACC
TCCTTTAAAATCACATTATAAACCATCCAAATCACCTNTCAAATCACCATCCATTTCACC
TTCCAATTCACCATTTAAATCACCATTTAAATCACCTTCCAAATCACCATTTAAATCACC
TTCCAAATCACCATCCATTTCACCTTACAATTCNCCATTTAAATCACCTTNCAATTCACC
TTTTAAATCACCATTTNNATCACCTTCCAAATCACGGNCAATAGGAAAAATCGTTAATGT
GATACCTTCGAAAAAAAGTTGCAAAAAACAAAAGTTAACAAGGACA
Length of 3' end seq. 586
Connected seq. ID AHB229P
Connected seq. 
>AHB229P.Seq
ATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACTCAA
GATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACGATG
ATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTACAAC
CGTACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACAAAATTTGCTA
CTGGAAGGTATTTATTTTTTATTTATTAATTTATTAGTTTTCTTTTTTTATTTTAATTAT
CATTTATTTTTTAGATGTTTGACAACAAAGAGAACAGTTCCCATATACAATTTTTTGGCT
CTCACGTACTTTGGCAAACCTGTGAAAGTATGGCACTGCGATAATGGACGTGAATTTAAA
AACAAAGTCCAAAAAGAATTCCTAAAACTTTTTCCAGGCTCCAAGTCAGCACATGGAGCT
CCTCGTACACCAACAACTCAAGGTATGGTAGAAAGATTGAATCGAACTATCAAGGAGAGG
ATCTCAAAATTAAAACAACAAGAGTATGATATTGTGAACAATATAAATTATCGATATGTT
TATTAATT----------TTAACAATCCATCAAATATTCCACTTATCATTAAGGATAATC
CATTTCAACACNAANTCAATAATGAAATGGAACAAGAAGAAATACTCCCATTTTTAAATA
ATAATCCAGNAGCGCNNAATTTAATGAATTGTTTGAGAAAGGATATGAATTTAAAAGAAA
TAGTACCACCAATACCTCAAGTGCAAATAATACCATCGTATACTATACCACAATCTTGGT
AGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCCTCATAAGATACCAATTGTT
AATAAACCTCCTTTAAAATCACATTATAAACCATCCAAATCACCTNTCAAATCACCATCC
ATTTCACCTTCCAATTCACCATTTAAATCACCATTTAAATCACCTTCCAAATCACCATTT
AAATCACCTTCCAAATCACCATCCATTTCACCTTACAATTCNCCATTTAAATCACCTTNC
AATTCACCTTTTAAATCACCATTTNNATCACCTTCCAAATCACGGNCAATAGGAAAAATC
GTTAATGTGATACCTTCGAAAAAAAGTTGCAAAAAACAAAAGTTAACAAGGACA
Length of connected seq. 1184
Full length Seq ID -
Full length Seq. -
Length of full length seq. -