AFB894
Library AF
(Link to library)
Clone ID AFB894
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15536-1
Original site URL
Representative seq. ID AFB894P
(Link to Original site)
Representative DNA sequence
>AFB894 (AFB894Q) /CSM/AF/AFB8-D/AFB894Q.Seq.d/
TTTTTATTTTTTATTTAATNATTTATAAATAAATATAAAATAAAAATATATTAAAAAATG
TCAGAACCAGTAGTTGACAATGTTACAAATAAAGTTGAAAAGATGGAAGTAAAAGAAAAA
ACTTCAGCACCACCAAAAGAGAAAAAAGAAAAGAAATCAAATAAAGTTCAATTAAAAACA
CCAAAAGGTACTCAAGATTATAATCCAAGACAAATGACAATTCGTGAACAAGTCTTTGAT
GGTATTAAACAAGTTTTTAAAAGACATGGTGCTGTTACAATTGAAACACCAGTATTTGAA
TTAAAGGAAACATTAACAGGTAAATATGGTGAAGATTCAAAATTAATTTATGATTTACAA
GATCAAGGTGGTGAAATTTGTTCATTAAGATATGATTTAACAGTACCATTCGCACGTTAT
GTTGCAATGAATGGTGTATTGAATATAAAGAGATATCATATTGCACGTGTTTATCGTCGT
GATAATCCAATTATGACCAAAGGTAGATTTAGAGAATTTTATCAATGTGATTTCGATATT
GCAGGTACCTATGATTTAATGGTACCAGATGCAGAATGTTTGGTAATGATTTXXXXXXXX
XXTCGTTTCATTAAAAGATGAACCAATCAAGTTATTACAACACTTACGTGCCACCGGTAT
GTGTGATGGCAACAAAGACGCCACTGAAGCACTCTCACAATTGGAGACACTCTTTGGTTA
TTTAGAATGTTTTGGTGTCACTCAACATATCCTCTTTGATCTTTCATTGGCAAGAGGTTT
GGATTACTACACTGGTATCATCTATGAAGCAGTTTTAACAGGTCAAGATCGTGTTGGTTC
CATCGCTGCTGGTGGTCGTTACGATGGTTTGGTCGGTATGTATGGTAAAAAAGATGTACC
AGCAGTTGGTTTCTCAATTGGTATCGAACGTATCTTTACCATCTTGGAGGACGAATACAA
AAAAGAGAATAAGAAAATCAGAGAGAATGCAACTCAAGTTTTCGTTGTTCAAATGGAGAA
AGATTTAATTAAAGAACGTCTTGCCATCGTCTCTGAACTTTGGAAAGCTGGTATCAACGC
TGAATTCTCTTACAAAGTTAATCCAAAACTTCCTGCTCAATTAAATACTGCCGATGAATC
AAATATTCCACTCATCATCATCATTGGTAAATCTGAAGTTGAAACTAATAGTCTCTCTGT
TAAAACTATGCACGATCGTAAACAAGTTTCAATGAACGTTCAAATTTCACTGTAAAATTA
AAGAAATTTATCAACAATTCCAAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
flffi*xfinkykikiy*KMSEPVVDNVTNKVEKMEVKEKTSAPPKEKKEKKSNKVQLKT
PKGTQDYNPRQMTIREQVFDGIKQVFKRHGAVTIETPVFELKETLTGKYGEDSKLIYDLQ
DQGGEICSLRYDLTVPFARYVAMNGVLNIKRYHIARVYRRDNPIMTKGRFREFYQCDFDI
AGTYDLMVPDAECLVMI---

---VSLKDEPIKLLQHLRATGMCDGNKDATEALSQLETLFGYLECFGVTQHILFDLSLAR
GLDYYTGIIYEAVLTGQDRVGSIAAGGRYDGLVGMYGKKDVPAVGFSIGIERIFTILEDE
YKKENKKIRENATQVFVVQMEKDLIKERLAIVSELWKAGINAEFSYKVNPKLPAQLNTAD
ESNIPLIIIIGKSEVETNSLSVKTMHDRKQVSMNVQISL*n*rnlstipk


Translated Amino Acid sequence (All Frames)
Frame A:
flffi*xfinkykikiy*KMSEPVVDNVTNKVEKMEVKEKTSAPPKEKKEKKSNKVQLKT
PKGTQDYNPRQMTIREQVFDGIKQVFKRHGAVTIETPVFELKETLTGKYGEDSKLIYDLQ
DQGGEICSLRYDLTVPFARYVAMNGVLNIKRYHIARVYRRDNPIMTKGRFREFYQCDFDI
AGTYDLMVPDAECLVMI---

---sfh*kmnqssyyntyvppvcvmatktplkhshnwrhslvi*nvlvslnisslifhwq
evwittlvssmkqf*qvkivlvpsllvvvtmvwsvcmvkkmyqqlvsqlvsnvslpswrt
ntkkrirksermqlkfslfkwrki*lknvlpsslnfgklvstlnsltkliqnflln*ilp
mnqifhsssslvnlklklivsllklctivnkfq*tfkfhckikeiyqqfqn

Frame B:
fyflfnxl*inik*kyikkcqnq*ltmlqiklkrwk*kkklqhhqkrkkkrnqikfn*kh
qkvlkiiiqdk*qfvnkslmvlnkflkdmvllqlkhqyln*rkh*qvnmvkiqn*fmiyk
ikvvkfvh*dmi*qyhshvmlq*mvy*i*rdiilhvfivviiql*pkvdlenfinvisil
qvpmi*wyqmqnvw**f---

---rfikr*tnqvittltchryv*wqqrrh*stltigdtlwlfrmfwchstypl*sfigk
rfgllhwyhl*ssfnrsrscwfhrcwwslrwfgryvw*krctsswflnwyrtylyhlggr
iqkre*enqrecnssfrcsngerfn*rtschrl*tleswyqr*illqs*sktscsikycr
*ikysthhhhw*i*s*n**slc*nyars*tsfnersnftvklkkfinnski

Frame C:
fifylxiyk*i*nknilknvrtss*qcyk*s*kdgskrknfsttkrekrkeik*ssiknt
krysrl*sktndns*tsl*wy*tsf*ktwccyn*ntsi*ikgninr*iw*rfkinl*ftr
srw*nlfiki*fnstirtlccnewcieykeisyctclss**snydqr*i*rilsm*fryc
ryl*fngtrcrmfgnd---

---VSLKDEPIKLLQHLRATGMCDGNKDATEALSQLETLFGYLECFGVTQHILFDLSLAR
GLDYYTGIIYEAVLTGQDRVGSIAAGGRYDGLVGMYGKKDVPAVGFSIGIERIFTILEDE
YKKENKKIRENATQVFVVQMEKDLIKERLAIVSELWKAGINAEFSYKVNPKLPAQLNTAD
ESNIPLIIIIGKSEVETNSLSVKTMHDRKQVSMNVQISL*n*rnlstipk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB894 (AFB894Q) /CSM/AF/AFB8-D/AFB894Q.Seq.d/ 2139 0.0
AFJ590 (AFJ590Q) /CSM/AF/AFJ5-D/AFJ590Q.Seq.d/ 1334 0.0
VFA410 (VFA410Q) /CSM/VF/VFA4-A/VFA410Q.Seq.d/ 1332 0.0
AFE848 (AFE848Q) /CSM/AF/AFE8-B/AFE848Q.Seq.d/ 1316 0.0
AFD186 (AFD186Q) /CSM/AF/AFD1-D/AFD186Q.Seq.d/ 1316 0.0
SFI440 (SFI440Q) /CSM/SF/SFI4-B/SFI440Q.Seq.d/ 1308 0.0
SFI340 (SFI340Q) /CSM/SF/SFI3-B/SFI340Q.Seq.d/ 1308 0.0
AFC220 (AFC220Q) /CSM/AF/AFC2-A/AFC220Q.Seq.d/ 1306 0.0
SSI792 (SSI792Q) /CSM/SS/SSI7-D/SSI792Q.Seq.d/ 1300 0.0
SFK815 (SFK815Q) /CSM/SF/SFK8-A/SFK815Q.Seq.d/ 1265 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 1251 0.0 7
AL423049|AL423049.1 T7 end of clone AZ0AA005G12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 52 6e-22 5
AU004124|AU004124.1 Bombyx mori cDNA, clone ws00954. 88 2e-20 4
BP119758|BP119758.1 Bombyx mori cDNA, clone:ceN-1281. 88 3e-20 4
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 92 2e-15 4
AV383171|AV383171.1 Halocynthia roretzi cDNA clone:005A01_5, 5' end, expressed in fertilized egg. 48 5e-12 3
AL049182|AL049182.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P5. 64 2e-10 3
AU001000|AU001000.1 Bombyx mori cDNA, clone fbf0885f. 60 2e-08 2
AV401511|AV401511.1 Bombyx mori cDNA clone:e96h0818. 42 3e-07 4
AI977135|AI977135.1 EST271729 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAF77 5' end, mRNA sequence. 44 3e-07 3
dna update 2003. 7.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86AS6) RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; ... 413 e-114
BC076748_1(BC076748|pid:none) Xenopus laevis hypothetical protei... 239 1e-61
AK152329_1(AK152329|pid:none) Mus musculus bone marrow macrophag... 237 7e-61
AK146922_1(AK146922|pid:none) Mus musculus 17 days embryo kidney... 236 1e-60
BC020088_1(BC020088|pid:none) Mus musculus histidyl-tRNA synthet... 236 1e-60
AK011685_1(AK011685|pid:none) Mus musculus 10 days embryo whole ... 236 1e-60
AK088824_1(AK088824|pid:none) Mus musculus 2 days neonate thymus... 236 1e-60
BC097969_1(BC097969|pid:none) Rattus norvegicus dead end homolog... 236 1e-60
AJ720198_1(AJ720198|pid:none) Gallus gallus mRNA for hypothetica... 235 3e-60
AK150081_1(AK150081|pid:none) Mus musculus bone marrow macrophag... 234 4e-60
protein update 2009. 3.27
PSORT

psg: 0.75 gvh: 0.12 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for AFB894 is nuc

5' end seq. ID AFB894F
5' end seq.
>AFB894F.Seq
TTTTTATTTTTTATTTAATNATTTATAAATAAATATAAAATAAAAATATATTAAAAAATG
TCAGAACCAGTAGTTGACAATGTTACAAATAAAGTTGAAAAGATGGAAGTAAAAGAAAAA
ACTTCAGCACCACCAAAAGAGAAAAAAGAAAAGAAATCAAATAAAGTTCAATTAAAAACA
CCAAAAGGTACTCAAGATTATAATCCAAGACAAATGACAATTCGTGAACAAGTCTTTGAT
GGTATTAAACAAGTTTTTAAAAGACATGGTGCTGTTACAATTGAAACACCAGTATTTGAA
TTAAAGGAAACATTAACAGGTAAATATGGTGAAGATTCAAAATTAATTTATGATTTACAA
GATCAAGGTGGTGAAATTTGTTCATTAAGATATGATTTAACAGTACCATTCGCACGTTAT
GTTGCAATGAATGGTGTATTGAATATAAAGAGATATCATATTGCACGTGTTTATCGTCGT
GATAATCCAATTATGACCAAAGGTAGATTTAGAGAATTTTATCAATGTGATTTCGATATT
GCAGGTACCTATGATTTAATGGTACCAGATGCAGAATGTTTGGTAATGATTT--------
--
Length of 5' end seq. 592
3' end seq. ID AFB894Z
3' end seq.
>AFB894Z.Seq
----------TCGTTTCATTAAAAGATGAACCAATCAAGTTATTACAACACTTACGTGCC
ACCGGTATGTGTGATGGCAACAAAGACGCCACTGAAGCACTCTCACAATTGGAGACACTC
TTTGGTTATTTAGAATGTTTTGGTGTCACTCAACATATCCTCTTTGATCTTTCATTGGCA
AGAGGTTTGGATTACTACACTGGTATCATCTATGAAGCAGTTTTAACAGGTCAAGATCGT
GTTGGTTCCATCGCTGCTGGTGGTCGTTACGATGGTTTGGTCGGTATGTATGGTAAAAAA
GATGTACCAGCAGTTGGTTTCTCAATTGGTATCGAACGTATCTTTACCATCTTGGAGGAC
GAATACAAAAAAGAGAATAAGAAAATCAGAGAGAATGCAACTCAAGTTTTCGTTGTTCAA
ATGGAGAAAGATTTAATTAAAGAACGTCTTGCCATCGTCTCTGAACTTTGGAAAGCTGGT
ATCAACGCTGAATTCTCTTACAAAGTTAATCCAAAACTTCCTGCTCAATTAAATACTGCC
GATGAATCAAATATTCCACTCATCATCATCATTGGTAAATCTGAAGTTGAAACTAATAGT
CTCTCTGTTAAAACTATGCACGATCGTAAACAAGTTTCAATGAACGTTCAAATTTCACTG
TAAAATTAAAGAAATTTATCAACAATTCCAAAATA
Length of 3' end seq. 685
Connected seq. ID AFB894P
Connected seq.
>AFB894P.Seq
TTTTTATTTTTTATTTAATNATTTATAAATAAATATAAAATAAAAATATATTAAAAAATG
TCAGAACCAGTAGTTGACAATGTTACAAATAAAGTTGAAAAGATGGAAGTAAAAGAAAAA
ACTTCAGCACCACCAAAAGAGAAAAAAGAAAAGAAATCAAATAAAGTTCAATTAAAAACA
CCAAAAGGTACTCAAGATTATAATCCAAGACAAATGACAATTCGTGAACAAGTCTTTGAT
GGTATTAAACAAGTTTTTAAAAGACATGGTGCTGTTACAATTGAAACACCAGTATTTGAA
TTAAAGGAAACATTAACAGGTAAATATGGTGAAGATTCAAAATTAATTTATGATTTACAA
GATCAAGGTGGTGAAATTTGTTCATTAAGATATGATTTAACAGTACCATTCGCACGTTAT
GTTGCAATGAATGGTGTATTGAATATAAAGAGATATCATATTGCACGTGTTTATCGTCGT
GATAATCCAATTATGACCAAAGGTAGATTTAGAGAATTTTATCAATGTGATTTCGATATT
GCAGGTACCTATGATTTAATGGTACCAGATGCAGAATGTTTGGTAATGATTT--------
--TCGTTTCATTAAAAGATGAACCAATCAAGTTATTACAACACTTACGTGCCACCGGTAT
GTGTGATGGCAACAAAGACGCCACTGAAGCACTCTCACAATTGGAGACACTCTTTGGTTA
TTTAGAATGTTTTGGTGTCACTCAACATATCCTCTTTGATCTTTCATTGGCAAGAGGTTT
GGATTACTACACTGGTATCATCTATGAAGCAGTTTTAACAGGTCAAGATCGTGTTGGTTC
CATCGCTGCTGGTGGTCGTTACGATGGTTTGGTCGGTATGTATGGTAAAAAAGATGTACC
AGCAGTTGGTTTCTCAATTGGTATCGAACGTATCTTTACCATCTTGGAGGACGAATACAA
AAAAGAGAATAAGAAAATCAGAGAGAATGCAACTCAAGTTTTCGTTGTTCAAATGGAGAA
AGATTTAATTAAAGAACGTCTTGCCATCGTCTCTGAACTTTGGAAAGCTGGTATCAACGC
TGAATTCTCTTACAAAGTTAATCCAAAACTTCCTGCTCAATTAAATACTGCCGATGAATC
AAATATTCCACTCATCATCATCATTGGTAAATCTGAAGTTGAAACTAATAGTCTCTCTGT
TAAAACTATGCACGATCGTAAACAAGTTTCAATGAACGTTCAAATTTCACTGTAAAATTA
AAGAAATTTATCAACAATTCCAAAATA
Length of connected seq. 1277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -