AHB194 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHB194
Library	AH (Link to library)
Clone ID	AHB194 (Link to dictyBase)
Atlas ID	-
NBRP ID	G22669
dictyBase ID	DDB0187985
Link to Contig	Contig-U11176-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB1-D/AHB194Q.Seq.d/
Representative seq. ID	AHB194P (Link to Original site)
Representative DNA sequence	>AHB194 (AHB194Q) /CSM/AH/AHB1-D/AHB194Q.Seq.d/ AAATGATTTAATAATCAAATAATTTATTTGTTTATATTTTATATTTATAAATTTTATATT TATGTGTAAAACTTGTATATTATTATTATTAAAGAAATTAAAGATATAAAATAAATAAAA ATAAAAAGAAAATGATAATAATAAATAAAGATAATGATAAGAAATCATTGTTTTTATTAT TGGTATCATTGATTTTTGTATTATTTGTATCAAATGTCATAGCAGATACAGATTATGCAA TATCACCTGTATCACTTTTATTACCATATAGTACATCAAAATATAGAAAACCATATAAAT TAGAAGCAAATAAAGGTTGTTTCGAATGGATCAATACAAATCCAGATTTGGTCGAAATCA CACCACTCTATGAATCAGCAGCATCATGTTCACCATCTTCAAATGATAAACAGCAAAATA TTGGAGCACCAGATTTATCACTTTGGGACAATTCACTCAATCAACCAAATAAAAAATGTT CAAAAGCTGTTTTAGTATCTGTTAGATCAGGTACTGTTTCCGAAAGAAATTCAGCTTTCA TTTATGCAGAAGAACAAATTACTGGTAAAAAATTACAATGTGAAGTATTTGTTGATAGAA TTTCATCAATTGTTATTGAAACAACXXXXXXXXXXTTGTTCAACTCGTGAATTTTTAGCT ATAAAAGAAGGTTCAAACGTTATTTCAGTATCATATATGGGTATGAGAGCAAAAATTTTA ATCTTTGCTTATCCACCATTAAAGAGTGATCAAAGTGAAATCTTGTTAACATTGGGTTCA ACATTAAATGTTTTCTTTAGTGGTGGTCCAGAACCATGGCATTTGGAAAGAAAGAGTCAT TTCCAATCAATTGTTTCAAATTTAACCAATGAACAAAATGTACTTTCAATCGTACCAGGT AATGGTAATTCATTCCGTGTCACTTGTCTTACTCATACAAATCCTTCAAAACCAATTGGT ATCGAATTAACCATTGGTAATAAAGTAACCACTACCAATCCATATCCAGCTAGTCCATCA ATTACAATTCCATACTCTTGTCGTCCCCCAGCTTCAATTCAATTACAAGTTGCCAATTTA CCAAAAGATCATCAAATTCAAGATTCTTCACATCATCAACAAATACAACAACAAGAACAA CAACAACAACAACAACAACAGCAATCAACTTGTCAAGAAACAAGAAACCAAATCTGAAGA AAAAGTTAAATCTGAACCTCAAAAACATTTATTACCAAGTCAAAAGAATAAATTGAAAAA GATTAAAGAGAAATAGGTCATCAAGAGAAGAGGAAAGACAGGAAAGAANGAAATTTTAGG TTCAGCGGGTTCTAAAAAAGAA
sequence update	2002.10.25
Translated Amino Acid sequence	mi*snnlfvyilylilylcvklvyyyyrnRYKINKNKKKMIIINKDNDKKSLFLLL VSLIFVLFVSNVIADTDYAISPVSLLLPYSTSKYRKPYKLEANKGCFEWINTNPDLVEIT PLYESAASCSPSSNDKQQNIGAPDLSLWDNSLNQPNKKCSKAVLVSVRSGTVSERNSAFI YAEEQITGKKLQCEVFVDRISSIVIET--- ---CSTREFLAIKEGSNVISVSYMGMRAKILIFAYPPLKSDQSEILLTLGSTLNVFFSGG PEPWHLERKSHFQSIVSNLTNEQNVLSIVPGNGNSFRVTCLTHTNPSKPIGIELTIGNKV TTTNPYPASPSITIPYSCRPPASIQLQVANLPKDHQIQDSSHHQQIQQQEQQQQQQQQQS TCQETRNQIrksitsktfitkskeiekdreighqekrkdrkexnfrfsgfkr
Translated Amino Acid sequence (All Frames)	Frame A: kfnnqiiylfifyiykfyiyvnlyiiiikeikdikikikrk**ikimirnhcfyy wyhflyylyqmsqiqimqyhlyhfyyhivhqnienhinkqikvvsngsiqiqiwsks hhsmnqqhhvhhlqminskilehqiyhfgtihsinqiknvqklfylldqvlfpkeiqls fmqknkllvknynvkylliefhqlllkq--- ---lfnsifsykrrfkryfsiiygyesknfnlclstikesknlvnigfnikcflww srtmafgkkesfpincfkfnqtkctfnrtrwfipchlsysyksfktnwyrinhw*s nhyqsisssinynsillsspsfnsitscqftkrssnsrfftsstntttrttttttttai nlsrnkkpnlkkklnlnlkniyyqvkrinkrlkrnrssreeerqerxkfvqrvlkk Frame B: ndliikficlyfifinfifmcktcillllkklkinkkkendnnkr*eiivfii giidfciicikchsryrlcnitcitfitiyikiktiirskrlfrmdqyksrfgrnh ttlissimftifk*takywstrfitlgqftqstkkmfkscfsicirycfrkkfsfh lcrrtnywkitmsicnfincynn--- ---CSTREFLAIKEGSNVISVSYMGMRAKILIFAYPPLKSDQSEILLTLGSTLNVFFSGG PEPWHLERKSHFQSIVSNLTNEQNVLSIVPGNGNSFRVTCLTHTNPSKPIGIELTIGNKV TTTNPYPASPSITIPYSCRPPASIQLQVANLPKDHQIQDSSHHQQIQQQEQQQQQQQQQS TCQETRNQIrksitsktfitkskeiekdreighqekrkdrkexnfrfsgfkr Frame C: mi*snnlfvyilylilylcvklvyyyyrnRYKINKNKKKMIIINKDNDKKSLFLLL VSLIFVLFVSNVIADTDYAISPVSLLLPYSTSKYRKPYKLEANKGCFEWINTNPDLVEIT PLYESAASCSPSSNDKQQNIGAPDLSLWDNSLNQPNKKCSKAVLVSVRSGTVSERNSAFI YAEEQITGKKLQCEVFVDRISSIVIET--- ---vqlvnflkkvqtlfqyhiwveqkfsllihhrvikvkschwvqhmfslvvv qnhgiwkervisnqlfqipmnkmyfqsyqvmvihsvslvlliqilqnqlvsnplvik plpihiqlvhqlqfhtlvvpqlqfnyklpiyqkiikfkilhiinkynnknnnnnnnnsnq lvkkqetkseekvksepqkhllpsqknklkkikek*vikrrgktgkxeilgsagskke
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AHB194 (AHB194Q) /CSM/AH/AHB1-D/AHB194Q.Seq.d/ 1836 0.0 VHD331 (VHD331Q) /CSM/VH/VHD3-B/VHD331Q.Seq.d/ 954 0.0 AHP651 (AHP651Q) /CSM/AH/AHP6-C/AHP651Q.Seq.d/ 789 0.0 VFJ759 (VFJ759Q) /CSM/VF/VFJ7-C/VFJ759Q.Seq.d/ 278 2e-73 CHG872 (CHG872Q) /CSM/CH/CHG8-C/CHG872Q.Seq.d/ 111 3e-23 CHN551 (CHN551Q) /CSM/CH/CHN5-C/CHN551Q.Seq.d/ 42 0.022 SSE276 (SSE276Q) /CSM/SS/SSE2-D/SSE276Q.Seq.d/ 38 0.34 SSA268 (SSA268Q) /CSM/SS/SSA2-C/SSA268Q.Seq.d/ 38 0.34 SFF218 (SFF218Q) /CSM/SF/SFF2-A/SFF218Q.Seq.d/ 38 0.34 AHF794 (AHF794Q) /CSM/AH/AHF7-D/AHF794Q.Seq.d/ 38 0.34
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 5e-05 19 AP006628\|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 2e-04 22 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 38 0.006 11 AL445565\|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 34 0.007 14 AL929124\|AL929124.13 Zebrafish DNA sequence from clone CH211-128D23. 36 0.010 7 AP003361\|AP003361.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 4/9. 40 0.018 14 AC140395\|AC140395.2 Mus musculus BAC clone RP24-183G4 from chromosome 6, complete sequence. 32 0.021 14 CC211725\|CC211725.1 CH261-74H13_RM1.1 CH261 Gallus gallus genomic clone CH261-74H13, DNA sequence. 52 0.021 1 AC131982\|AC131982.4 Mus musculus clone RP24-173D2, WORKING DRAFT SEQUENCE, 11 unordered pieces. 42 0.023 7 AL929358\|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5. 36 0.065 11
dna update	2004. 2.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q8TEM1) RecName: Full=Nuclear pore membrane glycoprotein 210; ... 81 7e-14 AB384541_1(AB384541\|pid:none) Synthetic construct DNA, clone: pF... 81 7e-14 (P11654) RecName: Full=Nuclear pore membrane glycoprotein 210; ... 72 3e-11 AF113751_1(AF113751\|pid:none) Mus musculus nuclear pore membrane... 72 6e-11 AK173056_1(AK173056\|pid:none) Mus musculus mRNA for mKIAA0906 pr... 72 6e-11 (Q9QY81) RecName: Full=Nuclear pore membrane glycoprotein 210; ... 72 6e-11 AK019752_1(AK019752\|pid:none) Mus musculus adult male testis cDN... 62 3e-08 (Q9D2F7) RecName: Full=Nuclear pore membrane glycoprotein 210-li... 62 3e-08 AK128000_1(AK128000\|pid:none) Homo sapiens cDNA FLJ46118 fis, cl... 61 1e-07 T28969(T28969) hypothetical protein T23H2.1 - Caenorhabditis ele... 59 4e-07
protein update	2009. 4.27
PSORT	psg: 0.60 gvh: 0.75 alm: 0.16 top: 0.13 tms: 0.07 mit: 0.31 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.21 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 24.0 %: cytoplasmic 20.0 %: endoplasmic reticulum 16.0 %: Golgi 16.0 %: nuclear 12.0 %: mitochondrial 4.0 %: extracellular, including cell wall 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for AHB194 is cyt
5' end seq. ID	AHB194F
5' end seq.	>AHB194F.Seq AAATGATTTAATAATCAAATAATTTATTTGTTTATATTTTATATTTATAAATTTTATATT TATGTGTAAAACTTGTATATTATTATTATTAAAGAAATTAAAGATATAAAATAAATAAAA ATAAAAAGAAAATGATAATAATAAATAAAGATAATGATAAGAAATCATTGTTTTTATTAT TGGTATCATTGATTTTTGTATTATTTGTATCAAATGTCATAGCAGATACAGATTATGCAA TATCACCTGTATCACTTTTATTACCATATAGTACATCAAAATATAGAAAACCATATAAAT TAGAAGCAAATAAAGGTTGTTTCGAATGGATCAATACAAATCCAGATTTGGTCGAAATCA CACCACTCTATGAATCAGCAGCATCATGTTCACCATCTTCAAATGATAAACAGCAAAATA TTGGAGCACCAGATTTATCACTTTGGGACAATTCACTCAATCAACCAAATAAAAAATGTT CAAAAGCTGTTTTAGTATCTGTTAGATCAGGTACTGTTTCCGAAAGAAATTCAGCTTTCA TTTATGCAGAAGAACAAATTACTGGTAAAAAATTACAATGTGAAGTATTTGTTGATAGAA TTTCATCAATTGTTATTGAAACAACNNNNNNNNNN
Length of 5' end seq.	635
3' end seq. ID	AHB194Z
3' end seq.	>AHB194Z.Seq NNNNNNNNNNTTGTTCAACTCGTGAATTTTTAGCTATAAAAGAAGGTTCAAACGTTATTT CAGTATCATATATGGGTATGAGAGCAAAAATTTTAATCTTTGCTTATCCACCATTAAAGA GTGATCAAAGTGAAATCTTGTTAACATTGGGTTCAACATTAAATGTTTTCTTTAGTGGTG GTCCAGAACCATGGCATTTGGAAAGAAAGAGTCATTTCCAATCAATTGTTTCAAATTTAA CCAATGAACAAAATGTACTTTCAATCGTACCAGGTAATGGTAATTCATTCCGTGTCACTT GTCTTACTCATACAAATCCTTCAAAACCAATTGGTATCGAATTAACCATTGGTAATAAAG TAACCACTACCAATCCATATCCAGCTAGTCCATCAATTACAATTCCATACTCTTGTCGTC CCCCAGCTTCAATTCAATTACAAGTTGCCAATTTACCAAAAGATCATCAAATTCAAGATT CTTCACATCATCAACAAATACAACAACAAGAACAACAACAACAACAACAACAACAGCAAT CAACTTGTCAAGAAACAAGAAACCAAATCTGAAGAAAAAGTTAAATCTGAACCTCAAAAA CATTTATTACCAAGTCAAAAGAATAAATTGAAAAAGATTAAAGAGAAATAGGTCATCAAG AGAAGAGGAAAGACAGGAAAGAANGAAATTTTAGGTTCAGCGGGTTCTAAAAAAGAA
Length of 3' end seq.	717
Connected seq. ID	AHB194P
Connected seq.	>AHB194P.Seq AAATGATTTAATAATCAAATAATTTATTTGTTTATATTTTATATTTATAAATTTTATATT TATGTGTAAAACTTGTATATTATTATTATTAAAGAAATTAAAGATATAAAATAAATAAAA ATAAAAAGAAAATGATAATAATAAATAAAGATAATGATAAGAAATCATTGTTTTTATTAT TGGTATCATTGATTTTTGTATTATTTGTATCAAATGTCATAGCAGATACAGATTATGCAA TATCACCTGTATCACTTTTATTACCATATAGTACATCAAAATATAGAAAACCATATAAAT TAGAAGCAAATAAAGGTTGTTTCGAATGGATCAATACAAATCCAGATTTGGTCGAAATCA CACCACTCTATGAATCAGCAGCATCATGTTCACCATCTTCAAATGATAAACAGCAAAATA TTGGAGCACCAGATTTATCACTTTGGGACAATTCACTCAATCAACCAAATAAAAAATGTT CAAAAGCTGTTTTAGTATCTGTTAGATCAGGTACTGTTTCCGAAAGAAATTCAGCTTTCA TTTATGCAGAAGAACAAATTACTGGTAAAAAATTACAATGTGAAGTATTTGTTGATAGAA TTTCATCAATTGTTATTGAAACAAC----------TTGTTCAACTCGTGAATTTTTAGCT ATAAAAGAAGGTTCAAACGTTATTTCAGTATCATATATGGGTATGAGAGCAAAAATTTTA ATCTTTGCTTATCCACCATTAAAGAGTGATCAAAGTGAAATCTTGTTAACATTGGGTTCA ACATTAAATGTTTTCTTTAGTGGTGGTCCAGAACCATGGCATTTGGAAAGAAAGAGTCAT TTCCAATCAATTGTTTCAAATTTAACCAATGAACAAAATGTACTTTCAATCGTACCAGGT AATGGTAATTCATTCCGTGTCACTTGTCTTACTCATACAAATCCTTCAAAACCAATTGGT ATCGAATTAACCATTGGTAATAAAGTAACCACTACCAATCCATATCCAGCTAGTCCATCA ATTACAATTCCATACTCTTGTCGTCCCCCAGCTTCAATTCAATTACAAGTTGCCAATTTA CCAAAAGATCATCAAATTCAAGATTCTTCACATCATCAACAAATACAACAACAAGAACAA CAACAACAACAACAACAACAGCAATCAACTTGTCAAGAAACAAGAAACCAAATCTGAAGA AAAAGTTAAATCTGAACCTCAAAAACATTTATTACCAAGTCAAAAGAATAAATTGAAAAA GATTAAAGAGAAATAGGTCATCAAGAGAAGAGGAAAGACAGGAAAGAANGAAATTTTAGG TTCAGCGGGTTCTAAAAAAGAA
Length of connected seq.	1332
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas