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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB184
Library AH
(Link to library)
Clone ID AHB184
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15718-1
Original site URL
Representative seq. ID AHB184P
(Link to Original site)
Representative DNA sequence 
>AHB184 (AHB184Q) /CSM/AH/AHB1-D/AHB184Q.Seq.d/
GATATATTATAAATAAATAATGATGAAATATATATATATTTTATTAATATTTTCTTTATT
GTTTTTGAAAATAAATTCACAAAATACAATTTTGTTGAATGCATTAATTTATGATCAAAC
TCCATCAAGAAATAATGATTTTCAAATTCCTTCTCCAGGAGGTATTGCAAAAGGGTTAGT
AAAATCTAATTTAGGTTCTGATAATACACCAGTTTTAGTGGCTGAGCGATCATCAACAAT
TCATTCACCAGAAACTTTTAATCAATGGTTTCACAATTATCCAGGAGTAAATTTACCAAT
TAATTATCAAATTACTTTAACTCAAAGTACTACAAATCCAAATGTTTATGCATATACAAA
TGATGCCTTTTTTCCAATAGATGGACAAGGATTTGATAATAAGACAAATTATCCATATGA
AGCCGTATATAGAGATGAACGTGGAACACCACATAATTTTCACTTTTGTTTGCAAATTCA
CTCAATGTTTGCATATAAGAAAGGTGATACTTTCTATTTTAATGGTGATGATGATGTTTG
GGTATTTATGAATAAAATATTAGTTGTTGATTTGGGAGGAATTCACGGTAAAGCAACAAC
AAGTATTAATTTGGATXXXXXXXXXXGTTGTTTATACAATTATACTGAATCAACATGTGA
TGACAATGATGCTTGTACTTCAGATGTATGTACAGAATATGGTTGTGAGCATTATACATA
TACTGGTTGTATGAATTGTACTAATGGAGGTTGTTTCACTACTCCAGATACATGTAATCA
TTATGGTTGTAATTTCACTGGTGATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGA
TAATGACCCATGTACTAAAGATCATTGCTTATATTCTGGGGATTGTTATTATGAAAAACT
TACCAATTGTACAACCCCAACCCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAA
TCATTCTATTGGTGTTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGAT
TTTTGGACATGAAAGATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAAC
TATTGGTTGTCCTGGTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCA
CTACACTGAATCAGGTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGG
AATGGAATGTCATGTTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTT
AGATTGTTTAGATCTTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAA
TCAAAATTATAAACCAAATATTAAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCC
AACTTGTAGANATTAATCAAAATTTTTAAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iyyk*IMMKYIYILLIFSLLFLKINSQNTILLNALIYDQTPSRNNDFQIPSPGGIAKGLV
KSNLGSDNTPVLVAERSSTIHSPETFNQWFHNYPGVNLPINYQITLTQSTTNPNVYAYTN
DAFFPIDGQGFDNKTNYPYEAVYRDERGTPHNFHFCLQIHSMFAYKKGDTFYFNGDDDVW
VFMNKILVVDLGGIHGKATTSINLD---

---CLYNYTESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNFT
GDGKCFFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGVN
ECDCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESGT
GNPHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKPN
IKGCKDXSCCKYTPTCRX*skflk*
Translated Amino Acid sequence (All Frames) 
Frame A:
dil*inndeiyiyfiniffivfenkftkynfvecinl*snsikk**fsnsfsrryckrvs
ki*frf**ytsfsg*aiinnsftrnf*smvsqlsrskftn*lsnyfnskyykskclciyk
*clfsnrwtri***dklsi*sri*r*twntt*fsllfanslnvci*er*yflf*w***cl
giye*nisc*fgrnsr*snnky*fg---

---vvytiilnqhvmtmmlvlqmyvqnmvvsiihilvv*ivlmevvsllqihviimvvis
lvmvnassli*nvmimthvlkiiayilgivimknlpivqpqpqlklllqlkllliillvl
mnaivalkvnivy*fldmkdvslqmmvvtvfqrkllvvlv*qlvhqhqqmvvqvttlnqv
qvihiyvidiivgvewnvmllmefqnvyhqntnv*iv*ifivknkvekhvlplkikiinq
ilkdvkxilvvnilqlvxinqnf*nk

Frame B:
iyyk*IMMKYIYILLIFSLLFLKINSQNTILLNALIYDQTPSRNNDFQIPSPGGIAKGLV
KSNLGSDNTPVLVAERSSTIHSPETFNQWFHNYPGVNLPINYQITLTQSTTNPNVYAYTN
DAFFPIDGQGFDNKTNYPYEAVYRDERGTPHNFHFCLQIHSMFAYKKGDTFYFNGDDDVW
VFMNKILVVDLGGIHGKATTSINLD---

---lfiqly*inm**q*clyfrcmyriwl*alyiywlyely*wrlfhysrym*slwl*fh
w*w*mllhsfrm****pmy*rsllifwglll*ktyqlynpnpnsnsssnsnsy*sfywc*
*mrllp*rsilfidfwt*kmfhck*ww*rysrgnywlswcnnwytninrwwyrslh*iry
r*stfm**tsl*ewngmscy*wnsrmftikiqmfrlfrssl*ktrwknmfyh*kskl*tk
y*rm*rxfll*iysnl*xlikifki

Frame C:
yiink***niyify*yflycf*k*ihkiqfc*mh*fmiklhqeimifkfllqevlqkg**
nli*vliihqf*wlsdhqqfihqkllingftiiqe*iyqliikll*lkvlqiqmfmhiqm
mpffq*mdkdliirqiihmkpyiemnvehhiiftfvckftqclhirkvilsilmvmmmfg
yl*iky*lliweeftvkqqqvliw---

---CLYNYTESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNFT
GDGKCFFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGVN
ECDCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESGT
GNPHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKPN
IKGCKDXSCCKYTPTCRX*skflk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB184 (AHB184Q) /CSM/AH/AHB1-D/AHB184Q.Seq.d/                       2615   0.0
AHJ431 (AHJ431Q) /CSM/AH/AHJ4-B/AHJ431Q.Seq.d/                       2607   0.0
AHL540 (AHL540Q) /CSM/AH/AHL5-B/AHL540Q.Seq.d/                       2581   0.0
SHG812 (SHG812Q) /CSM/SH/SHG8-A/SHG812Q.Seq.d/                       1552   0.0
AHQ868 (AHQ868Q) /CSM/AH/AHQ8-C/AHQ868Q.Seq.d/                       1552   0.0
AHO411 (AHO411Q) /CSM/AH/AHO4-A/AHO411Q.Seq.d/                       1544   0.0
AHO161 (AHO161Q) /CSM/AH/AHO1-C/AHO161Q.Seq.d/                       1544   0.0
AHK303 (AHK303Q) /CSM/AH/AHK3-A/AHK303Q.Seq.d/                       1544   0.0
CHF419 (CHF419Q) /CSM/CH/CHF4-A/CHF419Q.Seq.d/                       1536   0.0
AHO377 (AHO377Q) /CSM/AH/AHO3-D/AHO377Q.Seq.d/                       1536   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    68   7e-11  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   9e-10  31
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-07  16
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   4e-05  14
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    58   4e-04  1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    58   4e-04  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    52   5e-04  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.001  20
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    34   0.001  15
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    56   0.001  1
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                502   e-140
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                254   5e-66
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                206   2e-51
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                198   4e-49
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   152   4e-35
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                149   2e-34
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                140   1e-31
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                138   4e-31
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   138   5e-31
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   127   7e-28
protein update 2009. 4.27
PSORT 

 psg: 0.99  gvh: 0.78  alm: 0.40  top: 0.47  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for AHB184 is exc
5' end seq. ID AHB184F
5' end seq. 
>AHB184F.Seq
GATATATTATAAATAAATAATGATGAAATATATATATATTTTATTAATATTTTCTTTATT
GTTTTTGAAAATAAATTCACAAAATACAATTTTGTTGAATGCATTAATTTATGATCAAAC
TCCATCAAGAAATAATGATTTTCAAATTCCTTCTCCAGGAGGTATTGCAAAAGGGTTAGT
AAAATCTAATTTAGGTTCTGATAATACACCAGTTTTAGTGGCTGAGCGATCATCAACAAT
TCATTCACCAGAAACTTTTAATCAATGGTTTCACAATTATCCAGGAGTAAATTTACCAAT
TAATTATCAAATTACTTTAACTCAAAGTACTACAAATCCAAATGTTTATGCATATACAAA
TGATGCCTTTTTTCCAATAGATGGACAAGGATTTGATAATAAGACAAATTATCCATATGA
AGCCGTATATAGAGATGAACGTGGAACACCACATAATTTTCACTTTTGTTTGCAAATTCA
CTCAATGTTTGCATATAAGAAAGGTGATACTTTCTATTTTAATGGTGATGATGATGTTTG
GGTATTTATGAATAAAATATTAGTTGTTGATTTGGGAGGAATTCACGGTAAAGCAACAAC
AAGTATTAATTTGGATNNNNNNNNNN
Length of 5' end seq. 626
3' end seq. ID AHB184Z
3' end seq. 
>AHB184Z.Seq
NNNNNNNNNNGTTGTTTATACAATTATACTGAATCAACATGTGATGACAATGATGCTTGT
ACTTCAGATGTATGTACAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGAAT
TGTACTAATGGAGGTTGTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATTTC
ACTGGTGATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTACT
AAAGATCATTGCTTATATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAACC
CCAACCCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTGTT
AATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAAGA
TGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGT
GTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAGGT
ACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATGTT
ATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATCTT
CATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAACCA
AATATTAAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCCAACTTGTAGANATTAA
TCAAAATTTTTAAAATAAA
Length of 3' end seq. 799
Connected seq. ID AHB184P
Connected seq. 
>AHB184P.Seq
GATATATTATAAATAAATAATGATGAAATATATATATATTTTATTAATATTTTCTTTATT
GTTTTTGAAAATAAATTCACAAAATACAATTTTGTTGAATGCATTAATTTATGATCAAAC
TCCATCAAGAAATAATGATTTTCAAATTCCTTCTCCAGGAGGTATTGCAAAAGGGTTAGT
AAAATCTAATTTAGGTTCTGATAATACACCAGTTTTAGTGGCTGAGCGATCATCAACAAT
TCATTCACCAGAAACTTTTAATCAATGGTTTCACAATTATCCAGGAGTAAATTTACCAAT
TAATTATCAAATTACTTTAACTCAAAGTACTACAAATCCAAATGTTTATGCATATACAAA
TGATGCCTTTTTTCCAATAGATGGACAAGGATTTGATAATAAGACAAATTATCCATATGA
AGCCGTATATAGAGATGAACGTGGAACACCACATAATTTTCACTTTTGTTTGCAAATTCA
CTCAATGTTTGCATATAAGAAAGGTGATACTTTCTATTTTAATGGTGATGATGATGTTTG
GGTATTTATGAATAAAATATTAGTTGTTGATTTGGGAGGAATTCACGGTAAAGCAACAAC
AAGTATTAATTTGGAT----------GTTGTTTATACAATTATACTGAATCAACATGTGA
TGACAATGATGCTTGTACTTCAGATGTATGTACAGAATATGGTTGTGAGCATTATACATA
TACTGGTTGTATGAATTGTACTAATGGAGGTTGTTTCACTACTCCAGATACATGTAATCA
TTATGGTTGTAATTTCACTGGTGATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGA
TAATGACCCATGTACTAAAGATCATTGCTTATATTCTGGGGATTGTTATTATGAAAAACT
TACCAATTGTACAACCCCAACCCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAA
TCATTCTATTGGTGTTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGAT
TTTTGGACATGAAAGATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAAC
TATTGGTTGTCCTGGTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCA
CTACACTGAATCAGGTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGG
AATGGAATGTCATGTTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTT
AGATTGTTTAGATCTTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAA
TCAAAATTATAAACCAAATATTAAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCC
AACTTGTAGANATTAATCAAAATTTTTAAAATAAA
Length of connected seq. 1405
Full length Seq ID -
Full length Seq. -
Length of full length seq. -