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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB170
Library AH
(Link to library)
Clone ID AHB170
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11121-1
Original site URL
Representative seq. ID AHB170P
(Link to Original site)
Representative DNA sequence 
>AHB170 (AHB170Q) /CSM/AH/AHB1-C/AHB170Q.Seq.d/
GAGCATTCACATTTTGTAAATTAAAATATATATTTATATATATAATATTATTTTTATTCA
TATAGAATTATAATTAATAATGTCAGATAATTTATATGATGAATTTGGTAATTATATTGG
AGAAAGTTTAGAAGATGAAGAAGTAACATATGATCAACAACAGCAACAACAAGAAGAGGA
GGAGGAAGAGGATAGAAAACCAAACCAACAACAACAACAACAACAATATAATGACGATGA
AGCACATATAGAAGAAACAGGAGATAATGATGGTGGTGATGAAATGAATATAGATAGAGA
TAATATACAAATTTCAACAACATCAGCAATTGTATTACATGAAGATAAACAATATTTTCC
AGATGCATCAGATGTTTATAAAGGTGTTGAAGTTATGGTACAAGATGAAGATTCACAACC
ATTATCAAAACCAATCATTGATCCAAAGAAAAATAAATCATTTACAATCACTGAAAAAGA
TTATCCAGAAACAAGTTATTCTAAACAATTTTTAACCGATTTATCAACATATCCACAATT
CATTAGAAATGTTTCTTTAATCGGTCAATTACATCATGGTAAAACTTCATTCATGGATAT
GTTATTTCAACAAACTCATGAAAAGAAATGGXXXXXXXXXXAATTCGATTTGGGCATTTG
GTCCAGATATCAATGGTCCAAATATCCTATTGAACGATACCCTCCCAACTGAAGTGAACA
GATCCCTTCTATTATCCATCTCTGATTCCGTGGTTAGAGGCTTCCAATGGGCCACTAAAG
AAGGTCCATTGGTTGATGAACCAATTAGAAATGTAAAATTCAAACTATTGGATGCCACCA
TTGCCTCTGAACCAATTCAAAGATCCAGTGGCCATATTGTACCTGCCGCACGTTCTGTAA
CACATTCATCATTTTTAGTATCAACACCACGTTTAATGGAGCCTGTTTATCTAGTTGAAG
TAATCTCACCAATCGATTGTCTCAATGCAATCGAAAATGTTTTAACACGTCGTCGTGGTC
ATATCATTCATGACTTGCCAAAACCTGGTACACCACTTCACATTACAAAAGCTTTAATAC
CCGTATTGGATTCATATGGTTTTGAAACCGATCTTAGAGTTCATACTCAAGGTCAAGCTT
TCTGTCTTTCAACATTTGATCATTGGCAAGTGGTTCCAGGTGATCCTTTAGATAAATCAA
TTAAACTTCGTCCATTAGAACCTTCTCCAAAACTTCATTTGGCTCGTGAACTTTTAATCA
AAACTCGTAAGAGAAAAGGTCTATCGAAGATGTTAATTTTGGTAAACATTTCGAGAACAA
CTTTTATTATCTTTATCTCAAAANAAAATCAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
sihil*ikiyiyiyniifihiel*LIMSDNLYDEFGNYIGESLEDEEVTYDQQQQQQEEE
EEEDRKPNQQQQQQQYNDDEAHIEETGDNDGGDEMNIDRDNIQISTTSAIVLHEDKQYFP
DASDVYKGVEVMVQDEDSQPLSKPIIDPKKNKSFTITEKDYPETSYSKQFLTDLSTYPQF
IRNVSLIGQLHHGKTSFMDMLFQQTHEKKW---

---NSIWAFGPDINGPNILLNDTLPTEVNRSLLLSISDSVVRGFQWATKEGPLVDEPIRN
VKFKLLDATIASEPIQRSSGHIVPAARSVTHSSFLVSTPRLMEPVYLVEVISPIDCLNAI
ENVLTRRRGHIIHDLPKPGTPLHITKALIPVLDSYGFETDLRVHTQGQAFCLSTFDHWQV
VPGDPLDKSIKLRPLEPSPKLHLARELLIKTRKRKGLSKMLILVNISRTTFIIFISKXNQ
Translated Amino Acid sequence (All Frames) 
Frame A:
ehshfvn*niylyi*yyfysyriiinnvr*fi**iw*lywrkfrr*rsni*sttattrrg
ggrg*ktkptttttti**r*styrrnrr**ww**neyr*r*ytnfnnisncit*r*tifs
rcircl*rc*sygtr*rfttiiktnh*skek*iiynh*krlsrnklf*tifnrfinisti
h*kcffnrsitsw*nfihgyvistns*kem---

---NSIWAFGPDINGPNILLNDTLPTEVNRSLLLSISDSVVRGFQWATKEGPLVDEPIRN
VKFKLLDATIASEPIQRSSGHIVPAARSVTHSSFLVSTPRLMEPVYLVEVISPIDCLNAI
ENVLTRRRGHIIHDLPKPGTPLHITKALIPVLDSYGFETDLRVHTQGQAFCLSTFDHWQV
VPGDPLDKSIKLRPLEPSPKLHLARELLIKTRKRKGLSKMLILVNISRTTFIIFISKXNQ

Frame B:
sihil*ikiyiyiyniifihiel*LIMSDNLYDEFGNYIGESLEDEEVTYDQQQQQQEEE
EEEDRKPNQQQQQQQYNDDEAHIEETGDNDGGDEMNIDRDNIQISTTSAIVLHEDKQYFP
DASDVYKGVEVMVQDEDSQPLSKPIIDPKKNKSFTITEKDYPETSYSKQFLTDLSTYPQF
IRNVSLIGQLHHGKTSFMDMLFQQTHEKKW---

---irfghlvqismvqisy*tipsqlk*tdpfyypslipwleasngplkkvhwlmnqlem
*nsnywmpplplnqfkdpvailylphvl*hihhf*yqhhv*wslfi*lk*shqsivsmqs
kmf*hvvvvisfmtcqnlvhhftlqkl*ypywihmvlkpilefilkvklsvfqhliigkw
fqvil*inqlnfvh*nllqnfiwlvnf*sklvrekvyrrc*fw*tfreqlllslsqxkin

Frame C:
aftfcklkyifiyiilflfi*nyn**cqiiymmnlviilekv*kmkk*hminnsnnkkrr
rkrienqtnnnnnnnimtmkhi*kkqeimmvvmk*i*ieiiykfqqhqqlyymkinnifq
mhqmfikvlklwykmkihnhyqnqsliqrkinhlqslkkiiqkqvilnnf*piyqhihns
lemfl*svnyimvklhswicyfnklmkrn---

---fdlgiwsryqwskypieryppn*seqipsiihl*frg*rlpmgh*rrsig**tn*kc
kiqtigchhcl*tnskiqwpyctcrtfcntfiifsinttfngaclss*snltnrlsqcnr
kcfntsswsyhs*laktwyttshyksfntrigfiwf*nrs*ssysrssflsfni*slasg
sr*sfr*in*tssirtfsktsfgs*tfnqns*ekrsiedvnfgkhfennfyylylkxksi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB170 (AHB170Q) /CSM/AH/AHB1-C/AHB170Q.Seq.d/                       2171   0.0
CHM277 (CHM277Q) /CSM/CH/CHM2-D/CHM277Q.Seq.d/                       1407   0.0
CHM739 (CHM739Q) /CSM/CH/CHM7-B/CHM739Q.Seq.d/                       1405   0.0
AHL644 (AHL644Q) /CSM/AH/AHL6-B/AHL644Q.Seq.d/                       1394   0.0
SHC595 (SHC595Q) /CSM/SH/SHC5-D/SHC595Q.Seq.d/                       1392   0.0
AHA520 (AHA520Q) /CSM/AH/AHA5-A/AHA520Q.Seq.d/                       1392   0.0
AHK366 (AHK366Q) /CSM/AH/AHK3-C/AHK366Q.Seq.d/                       1386   0.0
VHA196 (VHA196Q) /CSM/VH/VHA1-D/VHA196Q.Seq.d/                       1384   0.0
VHK512 (VHK512Q) /CSM/VH/VHK5-A/VHK512Q.Seq.d/                       1374   0.0
AHK120 (AHK120Q) /CSM/AH/AHK1-A/AHK120Q.Seq.d/                       1364   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI742991|BI742991.1 kx37e02.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q19070 Q19070 ELONGATION FACTOR 2-LIKE ;, mRNA sequence.    70   5e-09  2
BI743756|BI743756.1 kx52f02.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O08810 O08810 U5-116KD. ;, mRNA sequence.    70   5e-09  2
BI501287|BI501287.1 kx30d02.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O08810 O08810 U5-116KD. ;, mRNA sequence.    70   7e-09  2
BI743844|BI743844.1 kx53f10.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O08810 O08810 U5-116KD. ;, mRNA sequence.    70   8e-09  2
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    46   5e-08  11
BX563928|BX563928.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse69f08_p1c.    66   1e-06  1
AZ670285|AZ670285.1 ENTHL76TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    50   1e-05  3
BH137479|BH137479.1 ENTOX42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    50   1e-04  3
CF036099|CF036099.1 QCG27d10.yg QCG Zea mays cDNA clone QCG27d10, mRNA sequence.    58   3e-04  1
T20371|T20371.1 6c01a10-t7 etiolated seedling Zea mays cDNA clone 6c01a10 5' end, mRNA sequence.    58   3e-04  1
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK221352_1(AK221352|pid:none) Arabidopsis thaliana mRNA for elon...   325   2e-87
AK102908_1(AK102908|pid:none) Oryza sativa Japonica Group cDNA c...   315   3e-84
BC090572_1(BC090572|pid:none) Xenopus tropicalis eftud2 protein,...   312   2e-83
BC044041_1(BC044041|pid:none) Xenopus laevis similar to U5 snRNP...   312   2e-83
BC041724_1(BC041724|pid:none) Xenopus laevis U5 snRNP-specific p...   311   3e-83
(Q15029) RecName: Full=116 kDa U5 small nuclear ribonucleoprotei...   311   3e-83
CR456774_1(CR456774|pid:none) Homo sapiens full open reading fra...   311   3e-83
AK172875_1(AK172875|pid:none) Mus musculus mRNA for mKIAA0031 pr...   311   3e-83
BC002360_1(BC002360|pid:none) Homo sapiens elongation factor Tu ...   311   3e-83
(A4FUD3) RecName: Full=116 kDa U5 small nuclear ribonucleoprotei...   311   3e-83
protein update 2009. 4.27
PSORT 

 psg: 0.75  gvh: -0.00  alm: 0.32  top: 0.40  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: vesicles of secretory system
	 16.0 %: nuclear
	 12.0 %: plasma membrane
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for AHB170 is cyt
5' end seq. ID AHB170F
5' end seq. 
>AHB170F.Seq
GAGCATTCACATTTTGTAAATTAAAATATATATTTATATATATAATATTATTTTTATTCA
TATAGAATTATAATTAATAATGTCAGATAATTTATATGATGAATTTGGTAATTATATTGG
AGAAAGTTTAGAAGATGAAGAAGTAACATATGATCAACAACAGCAACAACAAGAAGAGGA
GGAGGAAGAGGATAGAAAACCAAACCAACAACAACAACAACAACAATATAATGACGATGA
AGCACATATAGAAGAAACAGGAGATAATGATGGTGGTGATGAAATGAATATAGATAGAGA
TAATATACAAATTTCAACAACATCAGCAATTGTATTACATGAAGATAAACAATATTTTCC
AGATGCATCAGATGTTTATAAAGGTGTTGAAGTTATGGTACAAGATGAAGATTCACAACC
ATTATCAAAACCAATCATTGATCCAAAGAAAAATAAATCATTTACAATCACTGAAAAAGA
TTATCCAGAAACAAGTTATTCTAAACAATTTTTAACCGATTTATCAACATATCCACAATT
CATTAGAAATGTTTCTTTAATCGGTCAATTACATCATGGTAAAACTTCATTCATGGATAT
GTTATTTCAACAAACTCATGAAAAGAAATGGNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID AHB170Z
3' end seq. 
>AHB170Z.Seq
NNNNNNNNNNAATTCGATTTGGGCATTTGGTCCAGATATCAATGGTCCAAATATCCTATT
GAACGATACCCTCCCAACTGAAGTGAACAGATCCCTTCTATTATCCATCTCTGATTCCGT
GGTTAGAGGCTTCCAATGGGCCACTAAAGAAGGTCCATTGGTTGATGAACCAATTAGAAA
TGTAAAATTCAAACTATTGGATGCCACCATTGCCTCTGAACCAATTCAAAGATCCAGTGG
CCATATTGTACCTGCCGCACGTTCTGTAACACATTCATCATTTTTAGTATCAACACCACG
TTTAATGGAGCCTGTTTATCTAGTTGAAGTAATCTCACCAATCGATTGTCTCAATGCAAT
CGAAAATGTTTTAACACGTCGTCGTGGTCATATCATTCATGACTTGCCAAAACCTGGTAC
ACCACTTCACATTACAAAAGCTTTAATACCCGTATTGGATTCATATGGTTTTGAAACCGA
TCTTAGAGTTCATACTCAAGGTCAAGCTTTCTGTCTTTCAACATTTGATCATTGGCAAGT
GGTTCCAGGTGATCCTTTAGATAAATCAATTAAACTTCGTCCATTAGAACCTTCTCCAAA
ACTTCATTTGGCTCGTGAACTTTTAATCAAAACTCGTAAGAGAAAAGGTCTATCGAAGAT
GTTAATTTTGGTAAACATTTCGAGAACAACTTTTATTATCTTTATCTCAAAANAAAATCA
ATA
Length of 3' end seq. 723
Connected seq. ID AHB170P
Connected seq. 
>AHB170P.Seq
GAGCATTCACATTTTGTAAATTAAAATATATATTTATATATATAATATTATTTTTATTCA
TATAGAATTATAATTAATAATGTCAGATAATTTATATGATGAATTTGGTAATTATATTGG
AGAAAGTTTAGAAGATGAAGAAGTAACATATGATCAACAACAGCAACAACAAGAAGAGGA
GGAGGAAGAGGATAGAAAACCAAACCAACAACAACAACAACAACAATATAATGACGATGA
AGCACATATAGAAGAAACAGGAGATAATGATGGTGGTGATGAAATGAATATAGATAGAGA
TAATATACAAATTTCAACAACATCAGCAATTGTATTACATGAAGATAAACAATATTTTCC
AGATGCATCAGATGTTTATAAAGGTGTTGAAGTTATGGTACAAGATGAAGATTCACAACC
ATTATCAAAACCAATCATTGATCCAAAGAAAAATAAATCATTTACAATCACTGAAAAAGA
TTATCCAGAAACAAGTTATTCTAAACAATTTTTAACCGATTTATCAACATATCCACAATT
CATTAGAAATGTTTCTTTAATCGGTCAATTACATCATGGTAAAACTTCATTCATGGATAT
GTTATTTCAACAAACTCATGAAAAGAAATGG----------AATTCGATTTGGGCATTTG
GTCCAGATATCAATGGTCCAAATATCCTATTGAACGATACCCTCCCAACTGAAGTGAACA
GATCCCTTCTATTATCCATCTCTGATTCCGTGGTTAGAGGCTTCCAATGGGCCACTAAAG
AAGGTCCATTGGTTGATGAACCAATTAGAAATGTAAAATTCAAACTATTGGATGCCACCA
TTGCCTCTGAACCAATTCAAAGATCCAGTGGCCATATTGTACCTGCCGCACGTTCTGTAA
CACATTCATCATTTTTAGTATCAACACCACGTTTAATGGAGCCTGTTTATCTAGTTGAAG
TAATCTCACCAATCGATTGTCTCAATGCAATCGAAAATGTTTTAACACGTCGTCGTGGTC
ATATCATTCATGACTTGCCAAAACCTGGTACACCACTTCACATTACAAAAGCTTTAATAC
CCGTATTGGATTCATATGGTTTTGAAACCGATCTTAGAGTTCATACTCAAGGTCAAGCTT
TCTGTCTTTCAACATTTGATCATTGGCAAGTGGTTCCAGGTGATCCTTTAGATAAATCAA
TTAAACTTCGTCCATTAGAACCTTCTCCAAAACTTCATTTGGCTCGTGAACTTTTAATCA
AAACTCGTAAGAGAAAAGGTCTATCGAAGATGTTAATTTTGGTAAACATTTCGAGAACAA
CTTTTATTATCTTTATCTCAAAANAAAATCAATA
Length of connected seq. 1344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -