>AHB169 (AHB169Q) /CSM/AH/AHB1-C/AHB169Q.Seq.d/
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXGGTCAAGGTGCTGTTCAAA
CCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGT
TCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGG
AACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAG
TCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTG
CCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTT
GGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTT
TTGGTGCTTGGTTGAGGTGCCTCTGTTGCTGTNCTTTTACTTATGGNATCCCTTTNNGCT
TTCTTGCACGCTNTTANACTTCATTGGGTAGAATTCCAAAATAANTTCTATATTGGTGAT
GGTGTTAGATTCATTCCATACAGT

isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLRCLCCCXFTYGIPXXFLARXXTSLGRIPK*xlyw*wc*ihsiq

Frame A:
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLRCLCCCXFTYGIPXXFLARXXTSLGRIPK*xlyw*wc*ihsiq

Frame B:
fqkti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---vkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvi
tvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnv
vihswlslvlvlg*gasvavlllmxslxaflhaxxlhwvefqnxfyigdgvrfipys

Frame C:
fkklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---srccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwss
r*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw
*silgfrwfwclvevplllxfylwxpfxlsctllxfig*nskixsilvmvldsfht

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB169 (AHB169Q) /CSM/AH/AHB1-C/AHB169Q.Seq.d/                        995   0.0
AHB249 (AHB249Q) /CSM/AH/AHB2-C/AHB249Q.Seq.d/                        987   0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        979   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        979   0.0
VHG103 (VHG103Q) /CSM/VH/VHG1-A/VHG103Q.Seq.d/                        979   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        979   0.0
SHK785 (SHK785Q) /CSM/SH/SHK7-D/SHK785Q.Seq.d/                        979   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                        979   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                        979   0.0
SHG617 (SHG617Q) /CSM/SH/SHG6-A/SHG617Q.Seq.d/                        979   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   777   0.0    3
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   4e-12  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   1e-11  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   5e-11  1
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   1e-08  1
BQ408812|BQ408812.1 GA__Ed0012A07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0012A07r, mRNA sequence.    72   1e-08  1
BM301463|BM301463.1 MCR046C02_25968 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR046C02 5, mRNA sequence.    46   2e-08  3
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   4e-08  6
AL031744|AL031744.8 Plasmodium falciparum DNA from MAL1P1.         38   9e-08  11
AJ438978|AJ438978.1 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase  subunit 100 kDa subunit (vpha-a gene).    46   2e-07  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   267   2e-81
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   267   2e-81
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   133   1e-38
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   130   2e-37
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   130   2e-37
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   130   2e-37
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   130   4e-37
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   128   5e-37
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   128   8e-35
AP005666_3(AP005666|pid:none) Lotus japonicus genomic DNA, chrom...   120   1e-34

 psg: 0.85  gvh: 0.62  alm: 0.18  top: 0.50  tms: 0.20  mit: 0.32  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AHB169 is mit

>AHB169F.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN

>AHB169Z.Seq
NNNNNNNNNNGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCAT
TCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGA
AAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCA
TCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGA
GTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATT
GGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACG
TGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTGAGGTGCCTCTGTTGCTG
TNCTTTTACTTATGGNATCCCTTTNNGCTTTCTTGCACGCTNTTANACTTCATTGGGTAG
AATTCCAAAATAANTTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGT

>AHB169P.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAA----------GGTCAAGGTGCTGTTCAAA
CCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGT
TCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGG
AACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAG
TCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTG
CCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTT
GGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTT
TTGGTGCTTGGTTGAGGTGCCTCTGTTGCTGTNCTTTTACTTATGGNATCCCTTTNNGCT
TTCTTGCACGCTNTTANACTTCATTGGGTAGAATTCCAAAATAANTTCTATATTGGTGAT
GGTGTTAGATTCATTCCATACAGT