AHB163
Library AH
(Link to library)
Clone ID AHB163
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID AHB163P
(Link to Original site)
Representative DNA sequence
>AHB163 (AHB163Q) /CSM/AH/AHB1-C/AHB163Q.Seq.d/
AATATATAATATATAATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAA
AATGTTAATAAATAAAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATAT
TGTTGATGCTGGTTATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAA
TGTAGATTTCAAAATTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTC
AATTACATTCACTTGTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATAT
GGACTTTACAAAATTAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAA
TATAGTAATTGCCTATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGT
TAAATGGGAACCACCAACAATGGCTGGTACAGCTGCTCTTATGACTGGAGATTTCTTATT
ATTTGGTGAAGATGTTACAACTCTTCCTGGTGTTTACAATTCAAAACCAGTGTCATTGGG
TGTTTCATCAAATACTGACGCAACCAAAATAATGGTTAAAAGTCCAGGXXXXXXXXXXTT
GTCAAATCAATTACTCAATCACAAACNTNTGGATCANCTGTGACAATTAAAGGTTCATTC
TTTAATAAAAAGGACACTGGTTTGAAAATTATGGTTGGAAATCATTCATGTGATTCTTTG
ACTATTGTAGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAAT
GCTGTTTCATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGAT
TATAGTCCACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTT
ACTATTTATGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCA
TGTGAAGATGTTTCTGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACA
ATAGATCCTTCATTAACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCT
GCTAATGGTGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCA
ACATTAGCACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCA
ACAACATCTCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTA
ATTTTAATTTTCTCATTATTATTAC
sequence update 2002.10.25
Translated Amino Acid sequence
iyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKGKKLIYTGAN
VDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTLRGANLKTPN
IVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGVYNSKPVSLG
VSSNTDATKIMVKSP---

---VKSITQSQTXGSXVTIKGSFFNKKDTGLKIMVGNHSCDSLTIVDTQTLTCSAPPGSG
IKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYGTNFENTLITVNVG
SKSCEDVSVIDSTKLTCSISKSTIDPSLTNKKLAVNVTVNGQSANGEVFEYDNEALNTET
PKPTLAPTIKPTEKPTEKPTEKPTTSPIDKHIENSSSKISNSLILIFSLLL


Translated Amino Acid sequence (All Frames)
Frame A:
ni*yiiyilllliyifli*knvnk*nfififysitnni*yc*cwlyfic*rkkvniywcq
crfqny*nfvnfpknitrllnyihl*nsicq*pclyeygyglykiswkinskgskfknpk
ysncl*y*sqsnsttitn*g*mgttnngwyscsydwrfliiw*rcynsswclqfktsvig
cfiky*rnqnng*ksr---

---lsnqllnhkxxdxl*qlkvhslikrtlv*klwleiihvil*ll*ipkhllallhqev
vlkmlfhswlkmlnqnyhhhcf*iivhqplchqqv*nklkvvkllfmvpilkil*lq*ml
evnhvkmfl**iqpnllvqfqnqq*ilh*qirnwp*mll*mvnllmvkylnmimkhsilk
llnqh*hql*nqlknqlknqlknqqhlq*intlkivllkflih*f*fshyyy

Frame B:
iyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKGKKLIYTGAN
VDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTLRGANLKTPN
IVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGVYNSKPVSLG
VSSNTDATKIMVKSP---

---cqinysitnxwixcdn*rfil**kghwfenygwksfm*ffdycrypntyllcstrkw
y*kccfihg*rc*ikiittivfrl*stnhyvinkckts*rwssyylwyqf*kyfdyskcw
k*im*rcfcnrfnqtylfnfkinnrsfink*eigrkcyckwsic*w*si*i***stqy*n
s*tnistnyktn*ktn*ktn*ktnnisnr*th*k*ff*nf*finfnfliii

Frame C:
yiiyniyitftniyffnlkkc**ikfyfyflfyh*qylillmlvilyllkeks*yilvpm
*iskllkfc*lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn*len*l*geqi*kpqi
**lpmilkpikfhyhyqlrlngnhqqwlvqlll*leisyylvkmlqlflvftiqnqchwv
fhqiltqpk*wlkvq---

---VKSITQSQTXGSXVTIKGSFFNKKDTGLKIMVGNHSCDSLTIVDTQTLTCSAPPGSG
IKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYGTNFENTLITVNVG
SKSCEDVSVIDSTKLTCSISKSTIDPSLTNKKLAVNVTVNGQSANGEVFEYDNEALNTET
PKPTLAPTIKPTEKPTEKPTEKPTTSPIDKHIENSSSKISNSLILIFSLLL

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/ 1070 0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/ 1070 0.0
SHK674 (SHK674Q) /CSM/SH/SHK6-D/SHK674Q.Seq.d/ 1070 0.0
SHK612 (SHK612Q) /CSM/SH/SHK6-A/SHK612Q.Seq.d/ 1070 0.0
SHK454 (SHK454Q) /CSM/SH/SHK4-C/SHK454Q.Seq.d/ 1070 0.0
SHK336 (SHK336Q) /CSM/SH/SHK3-B/SHK336Q.Seq.d/ 1070 0.0
SHG859 (SHG859Q) /CSM/SH/SHG8-C/SHG859Q.Seq.d/ 1070 0.0
SHG695 (SHG695Q) /CSM/SH/SHG6-D/SHG695Q.Seq.d/ 1070 0.0
SHG451 (SHG451Q) /CSM/SH/SHG4-C/SHG451Q.Seq.d/ 1070 0.0
SHG394 (SHG394Q) /CSM/SH/SHG3-D/SHG394Q.Seq.d/ 1070 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 32 2e-04 25
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 5e-04 21
AC126443|AC126443.1 Mus musculus chromosome UNK clone RP23-464J8, WORKING DRAFT SEQUENCE, 17 unordered pieces. 44 0.001 2
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 36 0.004 11
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 40 0.005 10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 0.013 14
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence. 36 0.016 12
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 32 0.022 16
AC079526|AC079526.1 Mus musculus clone RP23-332K3, WORKING DRAFT SEQUENCE, 21 unordered pieces. 46 0.029 7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 0.056 15
dna update 2004. 2.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso... 86 3e-15
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 70 1e-10
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom... 64 8e-09
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS... 60 2e-07
(Q06885) RecName: Full=Glycoprotein gp100; AltName: Full=P29F8; ... 59 3e-07
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 59 3e-07
FJ374921_1(FJ374921|pid:none) Dictyostelium discoideum strain QS... 58 8e-07
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS... 57 1e-06
FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX... 57 1e-06
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS... 56 3e-06
protein update 2009. 4.27
PSORT

psg: 1.02 gvh: 0.61 alm: 0.23 top: 0.40 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AHB163 is end

5' end seq. ID AHB163F
5' end seq.
>AHB163F.Seq
AATATATAATATATAATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAA
AATGTTAATAAATAAAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATAT
TGTTGATGCTGGTTATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAA
TGTAGATTTCAAAATTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTC
AATTACATTCACTTGTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATAT
GGACTTTACAAAATTAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAA
TATAGTAATTGCCTATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGT
TAAATGGGAACCACCAACAATGGCTGGTACAGCTGCTCTTATGACTGGAGATTTCTTATT
ATTTGGTGAAGATGTTACAACTCTTCCTGGTGTTTACAATTCAAAACCAGTGTCATTGGG
TGTTTCATCAAATACTGACGCAACCAAAATAATGGTTAAAAGTCCAGGNNNNNNNNNN
Length of 5' end seq. 598
3' end seq. ID AHB163Z
3' end seq.
>AHB163Z.Seq
NNNNNNNNNNTTGTCAAATCAATTACTCAATCACAAACNTNTGGATCANCTGTGACAATT
AAAGGTTCATTCTTTAATAAAAAGGACACTGGTTTGAAAATTATGGTTGGAAATCATTCA
TGTGATTCTTTGACTATTGTAGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGT
GGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCA
TTGTTTTTAGATTATAGTCCACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAA
GGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTT
GGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATTCAACCAAACTTACTTGTTCAATT
TCAAAATCAACAATAGATCCTTCATTAACAAATAAGAAATTGGCCGTAAATGTTACTGTA
AATGGTCAATCTGCTAATGGTGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAA
ACTCCTAAACCAACATTAGCACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCA
ACTGAAAAACCAACAACATCTCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATT
TCTAATTCATTAATTTTAATTTTCTCATTATTATTAC
Length of 3' end seq. 697
Connected seq. ID AHB163P
Connected seq.
>AHB163P.Seq
AATATATAATATATAATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAA
AATGTTAATAAATAAAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATAT
TGTTGATGCTGGTTATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAA
TGTAGATTTCAAAATTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTC
AATTACATTCACTTGTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATAT
GGACTTTACAAAATTAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAA
TATAGTAATTGCCTATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGT
TAAATGGGAACCACCAACAATGGCTGGTACAGCTGCTCTTATGACTGGAGATTTCTTATT
ATTTGGTGAAGATGTTACAACTCTTCCTGGTGTTTACAATTCAAAACCAGTGTCATTGGG
TGTTTCATCAAATACTGACGCAACCAAAATAATGGTTAAAAGTCCAGG----------TT
GTCAAATCAATTACTCAATCACAAACNTNTGGATCANCTGTGACAATTAAAGGTTCATTC
TTTAATAAAAAGGACACTGGTTTGAAAATTATGGTTGGAAATCATTCATGTGATTCTTTG
ACTATTGTAGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAAT
GCTGTTTCATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGAT
TATAGTCCACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTT
ACTATTTATGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCA
TGTGAAGATGTTTCTGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACA
ATAGATCCTTCATTAACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCT
GCTAATGGTGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCA
ACATTAGCACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCA
ACAACATCTCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTA
ATTTTAATTTTCTCATTATTATTAC
Length of connected seq. 1275
Full length Seq ID -
Full length Seq. -
Length of full length seq. -