>AHB160 (AHB160Q) /CSM/AH/AHB1-C/AHB160Q.Seq.d/
ATTAATATATATTTTTTATCAATATATATTTAAAATATATAAAAAAATAAAAAAATGCCT
TTACGTTTAGATATTAAGAAAAAATTATCAACAAGATCAGATAGAGTTAAATCTGTTGAT
ATTCACCCAACAGAACCATGGATTTTAGCAAGTTTATATGATGGTAATGTTTATATTTGG
AATTATGAAACTCAAAATATGGTAAAATCATTTGAAGTTTCACCAAATAATCCAGTTAGA
ACAGCAAGATTCATTGCAAAGAAACAATGGATAGTTACAGGTAGTGATGATACATATATT
AGAGTTTATAATTATAATACAATGGAAAAGATAAAATCATTTGAAGCACATGCCGATTAT
ATTAGATGTATTATAGTTCATCCAACATTACCATATATATTATCATCATCGGATGATATG
TTTATAAAGTTATGGGATTATGAAAAGGGATGGAGTAACACTCAAGTCTTTGAAGGACAT
TCACATTACGTCATGTCGATTGCATGGAATCCAAAGGATACCAATCAATTTGCAACCGCA
TCATTGGATAAAACTGTGAAAGTGTGGAGTATAAACTCACCACATCCTCACTTTACATTG
GAGGGACACGAAAAGGGTATCAACAGTGTCGAGTATXXXXXXXXXXGCCTTTATGGCANG
GTACCTATTTACCATCGATGGTACCTGATATGGTTGAGAAATGGAAAGAGAGTTTAAAGA
GTACAAGCTCAAAAGCATCCGATGCACTTTCAAATCCAATCGATTTCCCAAATTTATTCC
CACAATATGATTTATCAATTAAAGCAGAGAAATATTTCGAATCATTAAGATCTCAACCAA
AATCATCTTTTGATTATTTAAAAAATGCTACTGCACAATCATTATCAAAGAAACAAAGAA
ACCTTTTAGAAGAGATTGAATCTGTTTCTCAACAAGATTATGATAAAGTTTTATCACAAT
TACAACATTTTAGTTTACATTCTGGTATTTCTGATATAACAACAACAACAACCAATACAA
ATAATAATACAAATAATACAAATAATAATAATACAGCATCACTTTTAGATGATCTAGATT
TTACTTCAACCACCACCACTACTACAACCACTACAAATACAAATACTACTCAAAAAGTTG
CATCACCACTTTCATCACCATCACCAATTAGAAAGAATGATTCAATTGCTTCTCCACAAA
AACAACAACAACAACAACAAGATATTAATATAACTGCACCACCACTCATTGATCCAAGTC
CAGTTGATCATGATTTAGTTTTAGAACCAACTCCAATTATTAATACTGTATCACCAACTA
AAACTTCTCCAACTGCCGATCTNCTCATTTTTAGATAATANACCAGTCGTATC

iniyflsiyi*ni*KNKKMPLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIW
NYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADY
IRCIIVHPTLPYILSSSDDMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATA
SLDKTVKVWSINSPHPHFTLEGHEKGINSVEY---

---PLWXGTYLPSMVPDMVEKWKESLKSTSSKASDALSNPIDFPNLFPQYDLSIKAEKYF
ESLRSQPKSSFDYLKNATAQSLSKKQRNLLEEIESVSQQDYDKVLSQLQHFSLHSGISDI
TTTTTNTNNNTNNTNNNNTASLLDDLDFTSTTTTTTTTTNTNTTQKVASPLSSPSPIRKN
DSIASPQKQQQQQQDINITAPPLIDPSPVDHDLVLEPTPIINTVSPTKTSPTADLLIFR*
xtsri

Frame A:
iniyflsiyi*ni*KNKKMPLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIW
NYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADY
IRCIIVHPTLPYILSSSDDMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATA
SLDKTVKVWSINSPHPHFTLEGHEKGINSVEY---

---afmaxylftidgt*yg*emerefkeyklksirctfksnrfpkfipti*fin*sreif
riikistkiif*lfkkcyctiiiketkkpfrrd*icfstrl**sfitittf*ftfwyf*y
nnnnnqyk**yk*yk***ysitfr*srfyfnhhhyynhykykyyskscittfititn*ke
*fncfstkttttttry*yncttth*skss*s*fsfrtnsny*ycitn*nfsncrsxhf*i
ixqsy

Frame B:
liyifyqyifkiykkikkclyv*ilrknyqqdqielnlliftqqnhgf*qvymmvmfifg
imklkiw*nhlkfhqiiqleqqdslqrnng*lqvvmihilefiiiiqwkr*nhlkhmpii
ldvl*fiqhyhiyyhhrmicl*sygimkrdgvtlkslkdihitscrlhgiqripinlqph
hwikl*kcgv*thhiltlhwrdtkrvstvss---

---PLWXGTYLPSMVPDMVEKWKESLKSTSSKASDALSNPIDFPNLFPQYDLSIKAEKYF
ESLRSQPKSSFDYLKNATAQSLSKKQRNLLEEIESVSQQDYDKVLSQLQHFSLHSGISDI
TTTTTNTNNNTNNTNNNNTASLLDDLDFTSTTTTTTTTTNTNTTQKVASPLSSPSPIRKN
DSIASPQKQQQQQQDINITAPPLIDPSPVDHDLVLEPTPIINTVSPTKTSPTADLLIFR*
xtsri

Frame C:
*yiffiniylkyikk*knaftfry*ekiinkir*s*ic*yspnrtmdfskfi*w*clyle
l*nskygkii*sftk*ss*nskihcketmdsyr***yiy*sl*l*yngkdkii*stcrly
*myysssnitiyiiiig*yvykvmgl*kgme*hssl*rtftlrhvdcmeskgyqsicnri
ig*ncesveyklttsslyiggtrkgyqqcrv---

---lygxvpiyhrwyliwlrngkrv*rvqaqkhpmhfqiqsisqiyshnmiyqlkqrnis
nh*dlnqnhllii*kmllhnhyqrnketf*krlnlflnkimikfyhnynilvyilvfli*
qqqqpiqiiiqiiqiiiiqhhf*mi*illqpppllqplqiqillkklhhhfhhhhqlerm
iqlllhknnnnnnkili*lhhhsliqvqlimi*f*nqlqllilyhqlkllqlpixsfldn
xpvv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB160 (AHB160Q) /CSM/AH/AHB1-C/AHB160Q.Seq.d/                       1792   0.0
VHA788 (VHA788Q) /CSM/VH/VHA7-D/VHA788Q.Seq.d/                       1152   0.0
SHL384 (SHL384Q) /CSM/SH/SHL3-D/SHL384Q.Seq.d/                       1152   0.0
SHD239 (SHD239Q) /CSM/SH/SHD2-B/SHD239Q.Seq.d/                       1152   0.0
AHQ130 (AHQ130Q) /CSM/AH/AHQ1-B/AHQ130Q.Seq.d/                       1152   0.0
AHG840 (AHG840Q) /CSM/AH/AHG8-B/AHG840Q.Seq.d/                       1152   0.0
AHE547 (AHE547Q) /CSM/AH/AHE5-B/AHE547Q.Seq.d/                       1152   0.0
AHD201 (AHD201Q) /CSM/AH/AHD2-A/AHD201Q.Seq.d/                       1152   0.0
AHB493 (AHB493Q) /CSM/AH/AHB4-D/AHB493Q.Seq.d/                       1152   0.0
AHA122 (AHA122Q) /CSM/AH/AHA1-A/AHA122Q.Seq.d/                       1152   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    84   4e-15  16
AY266451|AY266451.1 Plasmodium falciparum isolate 3D7 COPI protein (Sec27) mRNA, complete cds.    84   6e-13  4
AZ684437|AZ684437.1 ENTLH77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    66   2e-12  2
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            42   4e-11  23
AP003487|AP003487.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.    46   4e-11  3
AK111584|AK111584.1 Oryza sativa (japonica cultivar-group) cDNA clone:J013089O14, full insert sequence.    46   5e-11  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   4e-10  21
BH138380|BH138380.1 ENTOW32TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    66   5e-10  2
BE325928|BE325928.2 NF084H07ST1F1061 Developing stem Medicago truncatula cDNA clone NF084H07ST 5', mRNA sequence.    58   2e-09  3
AW692808|AW692808.2 NF059H03ST1F1031 Developing stem Medicago truncatula cDNA clone NF059H03ST 5', mRNA sequence.    58   2e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YD8) RecName: Full=Coatomer subunit beta'; AltName: Full=Bet...   410   e-113
(Q6H8D5) RecName: Full=Coatomer subunit beta'-2; AltName: Full=B...   313   9e-84
(Q9C827) RecName: Full=Coatomer subunit beta'-2; AltName: Full=B...   313   9e-84
(Q9CAA0) RecName: Full=Coatomer subunit beta'-1; AltName: Full=B...   310   6e-83
BT036985_1(BT036985|pid:none) Zea mays full-length cDNA clone ZM...   306   8e-82
BC096500_1(BC096500|pid:none) Xenopus tropicalis hypothetical pr...   299   2e-79
AK304219_1(AK304219|pid:none) Homo sapiens cDNA FLJ61545 complet...   299   2e-79
(P35606) RecName: Full=Coatomer subunit beta'; AltName: Full=Bet...   299   2e-79
(P35605) RecName: Full=Coatomer subunit beta'; AltName: Full=Bet...   299   2e-79
S35312(S35312;S39811) coatomer complex beta' chain - bovine  &X7...   299   2e-79

 psg: 0.43  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for AHB160 is nuc

>AHB160F.Seq
ATTAATATATATTTTTTATCAATATATATTTAAAATATATAAAAAAATAAAAAAATGCCT
TTACGTTTAGATATTAAGAAAAAATTATCAACAAGATCAGATAGAGTTAAATCTGTTGAT
ATTCACCCAACAGAACCATGGATTTTAGCAAGTTTATATGATGGTAATGTTTATATTTGG
AATTATGAAACTCAAAATATGGTAAAATCATTTGAAGTTTCACCAAATAATCCAGTTAGA
ACAGCAAGATTCATTGCAAAGAAACAATGGATAGTTACAGGTAGTGATGATACATATATT
AGAGTTTATAATTATAATACAATGGAAAAGATAAAATCATTTGAAGCACATGCCGATTAT
ATTAGATGTATTATAGTTCATCCAACATTACCATATATATTATCATCATCGGATGATATG
TTTATAAAGTTATGGGATTATGAAAAGGGATGGAGTAACACTCAAGTCTTTGAAGGACAT
TCACATTACGTCATGTCGATTGCATGGAATCCAAAGGATACCAATCAATTTGCAACCGCA
TCATTGGATAAAACTGTGAAAGTGTGGAGTATAAACTCACCACATCCTCACTTTACATTG
GAGGGACACGAAAAGGGTATCAACAGTGTCGAGTATNNNNNNNNNN

>AHB160Z.Seq
NNNNNNNNNNGCCTTTATGGCANGGTACCTATTTACCATCGATGGTACCTGATATGGTTG
AGAAATGGAAAGAGAGTTTAAAGAGTACAAGCTCAAAAGCATCCGATGCACTTTCAAATC
CAATCGATTTCCCAAATTTATTCCCACAATATGATTTATCAATTAAAGCAGAGAAATATT
TCGAATCATTAAGATCTCAACCAAAATCATCTTTTGATTATTTAAAAAATGCTACTGCAC
AATCATTATCAAAGAAACAAAGAAACCTTTTAGAAGAGATTGAATCTGTTTCTCAACAAG
ATTATGATAAAGTTTTATCACAATTACAACATTTTAGTTTACATTCTGGTATTTCTGATA
TAACAACAACAACAACCAATACAAATAATAATACAAATAATACAAATAATAATAATACAG
CATCACTTTTAGATGATCTAGATTTTACTTCAACCACCACCACTACTACAACCACTACAA
ATACAAATACTACTCAAAAAGTTGCATCACCACTTTCATCACCATCACCAATTAGAAAGA
ATGATTCAATTGCTTCTCCACAAAAACAACAACAACAACAACAAGATATTAATATAACTG
CACCACCACTCATTGATCCAAGTCCAGTTGATCATGATTTAGTTTTAGAACCAACTCCAA
TTATTAATACTGTATCACCAACTAAAACTTCTCCAACTGCCGATCTNCTCATTTTTAGAT
AATANACCAGTCGTATC

>AHB160P.Seq
ATTAATATATATTTTTTATCAATATATATTTAAAATATATAAAAAAATAAAAAAATGCCT
TTACGTTTAGATATTAAGAAAAAATTATCAACAAGATCAGATAGAGTTAAATCTGTTGAT
ATTCACCCAACAGAACCATGGATTTTAGCAAGTTTATATGATGGTAATGTTTATATTTGG
AATTATGAAACTCAAAATATGGTAAAATCATTTGAAGTTTCACCAAATAATCCAGTTAGA
ACAGCAAGATTCATTGCAAAGAAACAATGGATAGTTACAGGTAGTGATGATACATATATT
AGAGTTTATAATTATAATACAATGGAAAAGATAAAATCATTTGAAGCACATGCCGATTAT
ATTAGATGTATTATAGTTCATCCAACATTACCATATATATTATCATCATCGGATGATATG
TTTATAAAGTTATGGGATTATGAAAAGGGATGGAGTAACACTCAAGTCTTTGAAGGACAT
TCACATTACGTCATGTCGATTGCATGGAATCCAAAGGATACCAATCAATTTGCAACCGCA
TCATTGGATAAAACTGTGAAAGTGTGGAGTATAAACTCACCACATCCTCACTTTACATTG
GAGGGACACGAAAAGGGTATCAACAGTGTCGAGTAT----------GCCTTTATGGCANG
GTACCTATTTACCATCGATGGTACCTGATATGGTTGAGAAATGGAAAGAGAGTTTAAAGA
GTACAAGCTCAAAAGCATCCGATGCACTTTCAAATCCAATCGATTTCCCAAATTTATTCC
CACAATATGATTTATCAATTAAAGCAGAGAAATATTTCGAATCATTAAGATCTCAACCAA
AATCATCTTTTGATTATTTAAAAAATGCTACTGCACAATCATTATCAAAGAAACAAAGAA
ACCTTTTAGAAGAGATTGAATCTGTTTCTCAACAAGATTATGATAAAGTTTTATCACAAT
TACAACATTTTAGTTTACATTCTGGTATTTCTGATATAACAACAACAACAACCAATACAA
ATAATAATACAAATAATACAAATAATAATAATACAGCATCACTTTTAGATGATCTAGATT
TTACTTCAACCACCACCACTACTACAACCACTACAAATACAAATACTACTCAAAAAGTTG
CATCACCACTTTCATCACCATCACCAATTAGAAAGAATGATTCAATTGCTTCTCCACAAA
AACAACAACAACAACAACAAGATATTAATATAACTGCACCACCACTCATTGATCCAAGTC
CAGTTGATCATGATTTAGTTTTAGAACCAACTCCAATTATTAATACTGTATCACCAACTA
AAACTTCTCCAACTGCCGATCTNCTCATTTTTAGATAATANACCAGTCGTATC