>AHB153 (AHB153Q) /CSM/AH/AHB1-C/AHB153Q.Seq.d/
XXXXXXXXXXATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAANNACNACAGGAT
NAATTAAATCAAGNANA

---KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAA
KLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVI
KEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQ
IKNQLKNIQHEQQIQXXQDXLNQX

Frame A:
---*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc
*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*sy
qrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*p
n*ksikkyst*ttnpxttgxiksxx


Frame B:
---KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAA
KLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVI
KEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQ
IKNQLKNIQHEQQIQXXQDXLNQX


Frame C:
---rl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmll
nykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlkls
knfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltk
lkin*kifnmnnksxxxrxn*ikx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        545   e-154
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        545   e-154
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        545   e-154
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        545   e-154
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        545   e-154
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        545   e-154
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        545   e-154
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        545   e-154
SHL829 (SHL829Q) /CSM/SH/SHL8-B/SHL829Q.Seq.d/                        545   e-154
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        545   e-154

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   545   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   8e-27  13
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   127   2e-25  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   8e-06  16
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   2e-05  11
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36   9e-05  12
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   1e-04  13
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   3e-04  10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38   5e-04  11
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    38   5e-04  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   224   1e-57
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.2
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.1
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   4.7
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   6.1
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   6.1
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   6.1
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   8.0
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   8.0

 psg: 0.44  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for AHB153 is nuc

>AHB153Z.Seq
NNNNNNNNNNATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAANNACNACAGGAT
NAATTAAATCAAGNANA