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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB151
Library AH
(Link to library)
Clone ID AHB151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16426-1
Original site URL
Representative seq. ID AHB151P
(Link to Original site)
Representative DNA sequence 
>AHB151 (AHB151Q) /CSM/AH/AHB1-C/AHB151Q.Seq.d/
ATAATAATAATAAAATAATAATAACCCATAGTTTAATAATAACATATAGAAAGAAAGAAA
AAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAATTTTTAAATAATAATATAAATTAAAAAA
AAATAAAAAAAAAAATGTCANATTCAAGTTCTGGATCTGGTTCAGGNGAACATCTCAATC
GTTNCAATGCAAATGATAATGCATTTGTTGTAACATTAGTTATCAATTGNGNGGGGATGT
TAATTTTCTTTTTAATATTTTGCATTGTAANAANAAAATTCAAACAATTTTACCAATATA
NATTTGAACAXXXXXXXXXXACTCATTAAATTGAAATGGTTAGCAAAANCAAAGAGACAA
ATCGATGATACCNTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAATCTT
TTAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATTTGGT
GCTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAATACT
CCTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCATTGGT
TTACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTATGGT
ATTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAA
TTCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGATGGT
ACCAATAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACA
AGTTTAAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAATCTCT
sequence update 2002.10.25
Translated Amino Acid sequence 
nnnkiiithsliityrkkekkekrkkkkekflnnnin*KKIKKKMSXSSSGSGSGEHLNR
XNANDNAFVVTLVINXXGMLIFFLIFCIVXXKFKQFYQYXFE---

---LIKLKWLAKXKRQIDDTXHQGPFAYGVNYAKNLLILQLTLAYSTLSPFILIFGAWYF
GLSYLVQKYNIIWVNTPNYQCGGFMSPMHFRRTIIGLLIYHILMIGTFNVYKFYYGILVV
ICLVVTIVFWYFAEYKFKDISKSGIMDQYQKQQTDGTNSGDIEMKASGSSVINDSTSLNP
TVHQEFHDASHSIS
Translated Amino Acid sequence (All Frames) 
Frame A:
iiiik***piv***hierkkkkkkekrkkknf*iii*ikkk*kkkcxiqvldlvqxnisi
vxmqmimhll*h*lsixxgc*fsf*yfal*xxnsnnftnixln---

---th*iemvskxketnr*yxssrsiclwcklckesfnpsidfgllnsitfyfniwclvf
rfklsrskv*hhlgkys*lsmwwfhepnafqtydhwfthlsypydwyfqclqillwyfgs
hlfscyyrilvfc*i*iqgyfkewyngsiskttn*wyq*w*y*neslw*fsyq**ykfks
nctsrip*cfsfnl

Frame B:
****nnnnp*fnnni*kerkkrkkkkekrkifk**yklkknkkknvxfkfwiwfrxtsqs
xqck**ciccnisyqlxgdvnflfnilhcxxkiqtilpixi*t---

---LIKLKWLAKXKRQIDDTXHQGPFAYGVNYAKNLLILQLTLAYSTLSPFILIFGAWYF
GLSYLVQKYNIIWVNTPNYQCGGFMSPMHFRRTIIGLLIYHILMIGTFNVYKFYYGILVV
ICLVVTIVFWYFAEYKFKDISKSGIMDQYQKQQTDGTNSGDIEMKASGSSVINDSTSLNP
TVHQEFHDASHSIS

Frame C:
nnnkiiithsliityrkkekkekrkkkkekflnnnin*KKIKKKMSXSSSGSGSGEHLNR
XNANDNAFVVTLVINXXGMLIFFLIFCIVXXKFKQFYQYXFE---

---sln*ng*qxqrdksmipfikvhllmv*tmqrif*sfn*lwltqlyhllf*ylvlgis
v*visfksitsfg*illiinvvvs*aqcisdvrslvysfiisl*lvlsmftnstmvfw*s
sv*lllsyfgillninsrifqrvv*winiknnklmvpivvilk*kplvvqlsmivqv*iq
lyiknsmmlliqs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB151 (AHB151Q) /CSM/AH/AHB1-C/AHB151Q.Seq.d/                       1386   0.0
SFL440 (SFL440Q) /CSM/SF/SFL4-B/SFL440Q.Seq.d/                       1126   0.0
CHE820 (CHE820Q) /CSM/CH/CHE8-A/CHE820Q.Seq.d/                       1126   0.0
CFC669 (CFC669Q) /CSM/CF/CFC6-C/CFC669Q.Seq.d/                       1126   0.0
AHN848 (AHN848Q) /CSM/AH/AHN8-B/AHN848Q.Seq.d/                       1126   0.0
AHD317 (AHD317Q) /CSM/AH/AHD3-A/AHD317Q.Seq.d/                       1126   0.0
AHA204 (AHA204Q) /CSM/AH/AHA2-A/AHA204Q.Seq.d/                       1126   0.0
AFG823 (AFG823Q) /CSM/AF/AFG8-A/AFG823Q.Seq.d/                       1126   0.0
SFI453 (SFI453Q) /CSM/SF/SFI4-C/SFI453Q.Seq.d/                       1124   0.0
CHI833 (CHI833Q) /CSM/CH/CHI8-B/CHI833Q.Seq.d/                       1122   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF019983|AF019983.1 Dictyostelium discoideum R1062 gene, partial cds.  1076   0.0    1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   2e-04  13
AC009137|AC009137.8 Homo sapiens chromosome 16 clone RP11-521L9, complete sequence.    42   0.009  2
AC009027|AC009027.10 Homo sapiens chromosome 16 clone RP11-123C5, complete sequence.    42   0.009  2
AC099719|AC099719.3 Mus musculus chromosome 7 clone RP23-394F19 map 7, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    50   0.055  1
BB697505|BB697505.1 Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120493A17, 3' end partial sequence.    48   0.22   1
AC102535|AC102535.3 Mus musculus clone RP23-61O11, WORKING DRAFT SEQUENCE, 20 unordered pieces.    34   0.44   2
AC132593|AC132593.1 Mus musculus chromosome UNK clone RP24-218L22, WORKING DRAFT SEQUENCE, 5 unordered pieces.    34   0.66   9
AC026654|AC026654.3 Homo sapiens chromosome 1 clone RP11-240M13, WORKING DRAFT SEQUENCE, 11 unordered pieces.    38   0.67   8
AC020218|AC020218.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    46   0.86   1
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_57(AC116963|pid:none) Dictyostelium discoideum chromoso...   345   1e-93
AF019983_1(AF019983|pid:none) Dictyostelium discoideum R1062 gen...   330   5e-89
AF448811_1(AF448811|pid:none) Davidia involucrata unknown gene.        80   7e-14
AK221977_1(AK221977|pid:none) Arabidopsis thaliana mRNA for ERD4...    72   2e-11
AC025295_7(AC025295|pid:none) Arabidopsis thaliana chromosome 1 ...    72   2e-11
AB039928_1(AB039928|pid:none) Arabidopsis thaliana mRNA for ERD4...    72   2e-11
EU186363_1(EU186363|pid:none) Brassica rapa clone S27 early-resp...    68   4e-10
FM992690_440(FM992690|pid:none) Candida dubliniensis CD36 chromo...    59   2e-07
AE016820_257(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    59   2e-07
FM992688_582(FM992688|pid:none) Candida dubliniensis CD36 chromo...    58   5e-07
protein update 2009. 4.27
PSORT 

 psg: 0.83  gvh: 0.52  alm: 0.15  top: 0.70  tms: 0.27  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 16.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for AHB151 is pla
5' end seq. ID AHB151F
5' end seq. 
>AHB151F.Seq
ATAATAATAATAAAATAATAATAACCCATAGTTTAATAATAACATATAGAAAGAAAGAAA
AAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAATTTTTAAATAATAATATAAATTAAAAAA
AAATAAAAAAAAAAATGTCANATTCAAGTTCTGGATCTGGTTCAGGNGAACATCTCAATC
GTTNCAATGCAAATGATAATGCATTTGTTGTAACATTAGTTATCAATTGNGNGGGGATGT
TAATTTTCTTTTTAATATTTTGCATTGTAANAANAAAATTCAAACAATTTTACCAATATA
NATTTGAACANNNNNNNNNN
Length of 5' end seq. 320
3' end seq. ID AHB151Z
3' end seq. 
>AHB151Z.Seq
NNNNNNNNNNACTCATTAAATTGAAATGGTTAGCAAAANCAAAGAGACAAATCGATGATA
CCNTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAATCTTTTAATCCTTC
AATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATTTGGTGCTTGGTATT
TCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAATACTCCTAATTATC
AATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCATTGGTTTACTCATTT
ATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTATGGTATTTTGGTAG
TCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAATTCAAGGATA
TTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGATGGTACCAATAGTG
GTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACAAGTTTAAATC
CAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAATCTCT
Length of 3' end seq. 584
Connected seq. ID AHB151P
Connected seq. 
>AHB151P.Seq
ATAATAATAATAAAATAATAATAACCCATAGTTTAATAATAACATATAGAAAGAAAGAAA
AAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAATTTTTAAATAATAATATAAATTAAAAAA
AAATAAAAAAAAAAATGTCANATTCAAGTTCTGGATCTGGTTCAGGNGAACATCTCAATC
GTTNCAATGCAAATGATAATGCATTTGTTGTAACATTAGTTATCAATTGNGNGGGGATGT
TAATTTTCTTTTTAATATTTTGCATTGTAANAANAAAATTCAAACAATTTTACCAATATA
NATTTGAACA----------ACTCATTAAATTGAAATGGTTAGCAAAANCAAAGAGACAA
ATCGATGATACCNTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAATCTT
TTAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATTTGGT
GCTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAATACT
CCTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCATTGGT
TTACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTATGGT
ATTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAA
TTCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGATGGT
ACCAATAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACA
AGTTTAAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAATCTCT
Length of connected seq. 884
Full length Seq ID -
Full length Seq. -
Length of full length seq. -