AHB146
Library AH
(Link to library)
Clone ID AHB146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID AHB146P
(Link to Original site)
Representative DNA sequence
>AHB146 (AHB146Q) /CSM/AH/AHB1-B/AHB146Q.Seq.d/
GCGATTTATTTATACTTTTTATTTTTCTTTTTTTTTTATTATTTAATTTTATAAATAATT
AAACAACAACAACAACAACAACAACAACAAAAACAACAACAACAGTTTTTACTTTATATT
TTTTATTGTTGTAATAAGAAAATAAAACTATAAATTAAATATATTTGTAATACCATATCC
ATATAAAATTAATAATATTTAGGTTTAATATCCTTTTTTTATTTAAATATAATAATAATA
ATAATACAAATATNTATAAATTCAATTTCTTGTCATAAAAAATAATGGATANAAATGAAG
GGGGTGATTTCCCAATAANCACCCCTAATAATATAAATAGTAGNGGGGGTAGTTATAATA
ATAGTATGAATAATAGTAGTAATAATATTGGTANANATATTGGTAATAATCAAAGTAGTA
NAAATTTAAAACCAAAACCATCACAAAGCAATTTGAAATGGATAGCAAGANATTTAAAAA
ANAAAXXXXXXXXXXGTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTG
TAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAG
TCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCAT
CACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTG
GTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTA
GAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAAC
CAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAG
AATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATA
CCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGG
CTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTG
TCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTC
TTCGTCAAAGTGAAAAACAATGGCCATA
sequence update 2002.10.25
Translated Amino Acid sequence
dlfilfiflffllfnfinn*tttttttttkttttvftlyflll**enktin*iyl*yhih
ikliifrfnilflfkynnnnntnxykfnfls*KIMDXNEGGDFPIXTPNNINSXGGSYNN
SMNNSSNNIGXXIGNNQSSXNLKPKPSQSNLKWIARXLKXK---

---ASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLW
VEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVV
CEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMM
SAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWP


Translated Amino Acid sequence (All Frames)
Frame A:
aiylyflfffffyylil*iikqqqqqqqqqkqqqqfllyifyccnkkikl*ikyicntis
i*n**ylglisffylniiiiiiqixinsischkk*wixmkgvisq*xplii*ivxgvvii
iv*iivviilvxilviikvvxi*nqnhhkai*ng*qxi*kx---

---vllh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhf
g*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*
fvkfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl*
*vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknngh

Frame B:
rfiytfyfsfffii*fyk*lnnnnnnnnnknnnnsfyfiffivvirk*nyklnifvipyp
ykinni*v*ypffi*i*****ykyx*iqflviknngxk*rg*fpnxhp**yk**xg*l**
*ye*****ywxxyw**sk*xkfktktitkqfemdskxfkkx---

---cfsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitl
grsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketss
l*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyd
ecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmai

Frame C:
dlfilfiflffllfnfinn*tttttttttkttttvftlyflll**enktin*iyl*yhih
ikliifrfnilflfkynnnnntnxykfnfls*KIMDXNEGGDFPIXTPNNINSXGGSYNN
SMNNSSNNIGXXIGNNQSSXNLKPKPSQSNLKWIARXLKXK---

---ASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLW
VEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVV
CEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMM
SAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWP

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG755 (SHG755Q) /CSM/SH/SHG7-C/SHG755Q.Seq.d/ 1334 0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/ 1334 0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/ 1334 0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/ 1334 0.0
SHD789 (SHD789Q) /CSM/SH/SHD7-D/SHD789Q.Seq.d/ 1334 0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/ 1334 0.0
SHC648 (SHC648Q) /CSM/SH/SHC6-B/SHC648Q.Seq.d/ 1334 0.0
SHC269 (SHC269Q) /CSM/SH/SHC2-C/SHC269Q.Seq.d/ 1334 0.0
SHC267 (SHC267Q) /CSM/SH/SHC2-C/SHC267Q.Seq.d/ 1334 0.0
SHC163 (SHC163Q) /CSM/SH/SHC1-C/SHC163Q.Seq.d/ 1334 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 1334 0.0 3
AF087657|AF087657.1 Agrocybe aegerita NADH-ubiquinone oxidoreductase chain 6 (ND6) gene, mitochondrial gene encoding mitochondrial protein, complete cds. 36 0.41 2
AL445530|AL445530.19 Human DNA sequence from clone RP1-61F10 on chromosome 6. 44 1.0 2
AC134398|AC134398.3 Homo sapiens chromosome 11 clone RP11-79D4 map 11, LOW-PASS SEQUENCE SAMPLING. 34 2.0 4
AC144535|AC144535.4 Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 32 4.3 6
AC119192|AC119192.3 Mus musculus clone RP24-178H23, WORKING DRAFT SEQUENCE, 6 unordered pieces. 44 4.5 1
AC090647|AC090647.6 Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence. 44 4.5 1
AC098306|AC098306.4 Rattus norvegicus clone CH230-1N5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 4.5 1
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 44 4.5 1
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 44 4.5 1
dna update 2004. 2.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 453 e-126
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl... 40 0.15
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/... 35 3.7
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 3.7
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 35 6.3

protein update 2009. 4.27
PSORT

psg: 0.75 gvh: 0.25 alm: 0.23 top: 0.73 tms: 0.20 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

24.0 %: endoplasmic reticulum
24.0 %: plasma membrane
16.0 %: vacuolar
12.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for AHB146 is end

5' end seq. ID AHB146F
5' end seq.
>AHB146F.Seq
GCGATTTATTTATACTTTTTATTTTTCTTTTTTTTTTATTATTTAATTTTATAAATAATT
AAACAACAACAACAACAACAACAACAACAAAAACAACAACAACAGTTTTTACTTTATATT
TTTTATTGTTGTAATAAGAAAATAAAACTATAAATTAAATATATTTGTAATACCATATCC
ATATAAAATTAATAATATTTAGGTTTAATATCCTTTTTTTATTTAAATATAATAATAATA
ATAATACAAATATNTATAAATTCAATTTCTTGTCATAAAAAATAATGGATANAAATGAAG
GGGGTGATTTCCCAATAANCACCCCTAATAATATAAATAGTAGNGGGGGTAGTTATAATA
ATAGTATGAATAATAGTAGTAATAATATTGGTANANATATTGGTAATAATCAAAGTAGTA
NAAATTTAAAACCAAAACCATCACAAAGCAATTTGAAATGGATAGCAAGANATTTAAAAA
ANAAANNNNNNNNNN
Length of 5' end seq. 495
3' end seq. ID AHB146Z
3' end seq.
>AHB146Z.Seq
NNNNNNNNNNGTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAA
GATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATT
CAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTT
TGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACT
TATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAG
ATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTA
GTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCA
AGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATT
AAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATG
ATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTA
GCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGT
CAAAGTGAAAAACAATGGCCATA
Length of 3' end seq. 683
Connected seq. ID AHB146P
Connected seq.
>AHB146P.Seq
GCGATTTATTTATACTTTTTATTTTTCTTTTTTTTTTATTATTTAATTTTATAAATAATT
AAACAACAACAACAACAACAACAACAACAAAAACAACAACAACAGTTTTTACTTTATATT
TTTTATTGTTGTAATAAGAAAATAAAACTATAAATTAAATATATTTGTAATACCATATCC
ATATAAAATTAATAATATTTAGGTTTAATATCCTTTTTTTATTTAAATATAATAATAATA
ATAATACAAATATNTATAAATTCAATTTCTTGTCATAAAAAATAATGGATANAAATGAAG
GGGGTGATTTCCCAATAANCACCCCTAATAATATAAATAGTAGNGGGGGTAGTTATAATA
ATAGTATGAATAATAGTAGTAATAATATTGGTANANATATTGGTAATAATCAAAGTAGTA
NAAATTTAAAACCAAAACCATCACAAAGCAATTTGAAATGGATAGCAAGANATTTAAAAA
ANAAA----------GTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTG
TAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAG
TCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCAT
CACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTG
GTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTA
GAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAAC
CAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAG
AATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATA
CCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGG
CTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTG
TCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTC
TTCGTCAAAGTGAAAAACAATGGCCATA
Length of connected seq. 1158
Full length Seq ID -
Full length Seq. -
Length of full length seq. -