>AHB145 (AHB145Q) /CSM/AH/AHB1-B/AHB145Q.Seq.d/
TTAAAAGTAAAAAAGCTGCCATTACCAGTAATAGTTTCTGTAATCATATTATTAAACCAT
CATTTGGATGGGAATTAGATATGACCATTTGGGAAATGACTTCAAGTTATTTCGTTGCAA
ACCAGGTCCAAATGCAACTGTTTTCAAAAGTATGTGGTTCAATTTCCAAAATGATACTGA
TAATGACCCAACAAAATCAAATTTATACTACGGTTTCCCAGCTGTACCATGGATGACTGA
TAACCATTGTAGAATTGCATTGGATGCAGCATTACGTCAAATTAAAGATCCAAACGATCG
TCATGATGGTGTTGAAACTCATGATGTTAATCGTACTCGTGACTGGGTTAGAGAACATAT
TCCAGGTGTTGACGATACTCCACTCTTTAACGTTAGTGCACTCATGGCAAATGTTTATGA
TAATATGTTTGTTTTAGATTTTATCCCAGAAACTAATAATAACGTTGTCATGTTTGCATG
TGGTTGGGCTATGAAATTTATTCCATTATTAGGTAAAATTCTCAGTCAATTGCTTGATGA
AGGTAAAACCCAATATCCAATCGATCATTTTGCATTAAATCGTGGTAATGGTGCATTAAT
TATCAAAGAAGGTCAAACACCAAAGTCTGTTAAXXXXXXXXXX

*k*kschyq**fl*syy*TIIWMGIRYDHLGNDFKLFRCKPGPNATVFKSMWFNFQNDTD
NDPTKSNLYYGFPAVPWMTDNHCRIALDAALRQIKDPNDRHDGVETHDVNRTRDWVREHI
PGVDDTPLFNVSALMANVYDNMFVLDFIPETNNNVVMFACGWAMKFIPLLGKILSQLLDE
GKTQYPIDHFALNRGNGALIIKEGQTPKSV---

Frame A:
lkvkklplpvivsviillnhhldgn*i*pfgk*lqvislqtrskcncfqkyvvqfpk*y*
**pnkikfilrfpsctmdd**pl*ncigcsitsn*rskrss*wc*ns*c*sys*lg*rty
src*rystl*r*cthgkcl**yvcfrfyprn***rchvcmwlgyeiysiir*nsqsia**
r*npisnrsfciksw*wcinyqrrsntkvc---


Frame B:
*k*kschyq**fl*syy*TIIWMGIRYDHLGNDFKLFRCKPGPNATVFKSMWFNFQNDTD
NDPTKSNLYYGFPAVPWMTDNHCRIALDAALRQIKDPNDRHDGVETHDVNRTRDWVREHI
PGVDDTPLFNVSALMANVYDNMFVLDFIPETNNNVVMFACGWAMKFIPLLGKILSQLLDE
GKTQYPIDHFALNRGNGALIIKEGQTPKSV---


Frame C:
kskkaaitsnsfcnhiikpsfgweldmtiwemtssyfvanqvqmqlfskvcgsiskmili
mtqqnqiyttvsqlyhg*litivelhwmqhyvklkiqtivmmvlklmmlivlvtglenif
qvltilhsltlvhswqmfmiiclf*ilsqkliitlsclhvvgl*nlfhy*vkfsvnclmk
vkpniqsiilh*ivvmvh*lskkvkhqsll---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB145 (AHB145Q) /CSM/AH/AHB1-B/AHB145Q.Seq.d/                       1255   0.0
VHA623 (VHA623Q) /CSM/VH/VHA6-A/VHA623Q.Seq.d/                        906   0.0
VHL442 (VHL442Q) /CSM/VH/VHL4-B/VHL442Q.Seq.d/                        698   0.0
VHO852 (VHO852Q) /CSM/VH/VHO8-C/VHO852Q.Seq.d/                        668   0.0
VHD101 (VHD101Q) /CSM/VH/VHD1-A/VHD101Q.Seq.d/                        662   0.0
VFA218 (VFA218Q) /CSM/VF/VFA2-A/VFA218Q.Seq.d/                        539   e-152
VHM606 (VHM606Q) /CSM/VH/VHM6-A/VHM606Q.Seq.d/                        474   e-133
VHI802 (VHI802Q) /CSM/VH/VHI8-A/VHI802Q.Seq.d/                        381   e-105
AHQ830 (AHQ830Q) /CSM/AH/AHQ8-B/AHQ830Q.Seq.d/                        375   e-103
VHG166 (VHG166Q) /CSM/VH/VHG1-C/VHG166Q.Seq.d/                        149   6e-35

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CC278150|CC278150.1 CH261-95K2_Sp6.1 CH261 Gallus gallus genomic clone CH261-95K2, genomic survey sequence.    38   0.016  3
AL928996|AL928996.5 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-437M2.    42   0.019  2
AC127375|AC127375.2 Mus musculus chromosome UNK clone RP23-48J17, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40   0.052  5
AP005114|AP005114.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689H05.    42   0.066  3
AC022795|AC022795.9 Homo sapiens chromosome 18, clone RP11-254G11, complete sequence.    46   0.61   1
AC022809|AC022809.6 Homo sapiens chromosome 18, clone RP11-699A5, complete sequence.    46   0.61   1
CL030392|CL030392.1 CH216-30O21_RM1.1 CH216 Silurana tropicalis genomic clone CH216-30O21, genomic survey sequence.    46   0.61   1
AP005400|AP005400.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0698G06.    32   1.0    6
AC121703|AC121703.3 Rattus norvegicus clone CH230-322D19, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40   1.3    4
AX347009|AX347009.1 Sequence 2080 from Patent WO0200928.           40   1.5    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   149   2e-40
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...    74   3e-12
CP000431_3269(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    63   8e-09
(P40859) RecName: Full=Monomeric sarcosine oxidase;          Sho...    57   3e-07
CP000386_1539(CP000386|pid:none) Rubrobacter xylanophilus DSM 99...    57   4e-07
CP000656_3062(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    54   3e-06
CP000384_2446(CP000384|pid:none) Mycobacterium sp. MCS, complete...    49   9e-05
BC158505_1(BC158505|pid:none) Xenopus tropicalis pipecolic acid ...    47   4e-04
BC106466_1(BC106466|pid:none) Xenopus laevis hypothetical protei...    47   6e-04
(P40854) RecName: Full=Monomeric sarcosine oxidase;          Sho...    47   6e-04

 psg: 0.59  gvh: 0.19  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for AHB145 is cyt

>AHB145F.Seq
TTAAAAGTAAAAAAGCTGCCATTACCAGTAATAGTTTCTGTAATCATATTATTAAACCAT
CATTTGGATGGGAATTAGATATGACCATTTGGGAAATGACTTCAAGTTATTTCGTTGCAA
ACCAGGTCCAAATGCAACTGTTTTCAAAAGTATGTGGTTCAATTTCCAAAATGATACTGA
TAATGACCCAACAAAATCAAATTTATACTACGGTTTCCCAGCTGTACCATGGATGACTGA
TAACCATTGTAGAATTGCATTGGATGCAGCATTACGTCAAATTAAAGATCCAAACGATCG
TCATGATGGTGTTGAAACTCATGATGTTAATCGTACTCGTGACTGGGTTAGAGAACATAT
TCCAGGTGTTGACGATACTCCACTCTTTAACGTTAGTGCACTCATGGCAAATGTTTATGA
TAATATGTTTGTTTTAGATTTTATCCCAGAAACTAATAATAACGTTGTCATGTTTGCATG
TGGTTGGGCTATGAAATTTATTCCATTATTAGGTAAAATTCTCAGTCAATTGCTTGATGA
AGGTAAAACCCAATATCCAATCGATCATTTTGCATTAAATCGTGGTAATGGTGCATTAAT
TATCAAAGAAGGTCAAACACCAAAGTCTGTTAANNNNNNNNNN